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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<a href="#pub-types">Public Types</a> &#124;
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<a href="#pub-static-attribs">Static Public Attributes</a> &#124;
<a href="#pro-methods">Protected Member Functions</a>  </div>
  <div class="headertitle">
<div class="title">C3DImage Class Reference<span class="mlabels"><span class="mlabel">abstract</span></span><div class="ingroups"><a class="el" href="group__basic.html">Basic data strctures and functions</a></div></div>  </div>
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<p>The generic base type of a 3D image.  
 <a href="classC3DImage.html#details">More...</a></p>

<p><code>#include &lt;<a class="el" href="3d_2image_8hh_source.html">mia/3d/image.hh</a>&gt;</code></p>
<div class="dynheader">
Inheritance diagram for C3DImage:</div>
<div class="dyncontent">
 <div class="center">
  <img src="classC3DImage.png" usemap="#C3DImage_map" alt=""/>
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<area href="classCAttributedData.html" title="A collection of attributes. " alt="CAttributedData" shape="rect" coords="0,0,101,24"/>
<area href="classT3DImage.html" title="Specific type of the 3D images that hold real pixel data. " alt="T3DImage&lt; T &gt;" shape="rect" coords="0,112,101,136"/>
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<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-types"></a>
Public Types</h2></td></tr>
<tr class="memitem:ae42af0c48a4d49ef95a74d4aa87dcccb"><td class="memItemLeft" align="right" valign="top">typedef <a class="el" href="3d_2vector_8hh.html#a34609a389450f4561ebf2b1e61a2b250">C3DBounds</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#ae42af0c48a4d49ef95a74d4aa87dcccb">dimsize_type</a></td></tr>
<tr class="memdesc:ae42af0c48a4d49ef95a74d4aa87dcccb"><td class="mdescLeft">&#160;</td><td class="mdescRight">generic type for the dimension of the image  <a href="#ae42af0c48a4d49ef95a74d4aa87dcccb">More...</a><br/></td></tr>
<tr class="separator:ae42af0c48a4d49ef95a74d4aa87dcccb"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa60c0c0b84a2e7fbc17e9a18cdb0cc7c"><td class="memItemLeft" align="right" valign="top">typedef std::shared_ptr&lt; <a class="el" href="classC3DImage.html">C3DImage</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#aa60c0c0b84a2e7fbc17e9a18cdb0cc7c">Pointer</a></td></tr>
<tr class="memdesc:aa60c0c0b84a2e7fbc17e9a18cdb0cc7c"><td class="mdescLeft">&#160;</td><td class="mdescRight">Pointer type of the image.  <a href="#aa60c0c0b84a2e7fbc17e9a18cdb0cc7c">More...</a><br/></td></tr>
<tr class="separator:aa60c0c0b84a2e7fbc17e9a18cdb0cc7c"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a75a0490d13a7793a764e9e2ce913a8ec"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="classC3DImage.html#aa60c0c0b84a2e7fbc17e9a18cdb0cc7c">Pointer</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#a75a0490d13a7793a764e9e2ce913a8ec">clone</a> () const =0</td></tr>
<tr class="separator:a75a0490d13a7793a764e9e2ce913a8ec"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a102440249d1cf3a27b07d4ea20301f1e"><td class="memItemLeft" align="right" valign="top"><a class="el" href="group__basic.html#gac301135d3a1ae3d16be1f63b7792f6ec">E3DImageOrientation</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#a102440249d1cf3a27b07d4ea20301f1e">get_orientation</a> () const </td></tr>
<tr class="separator:a102440249d1cf3a27b07d4ea20301f1e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a755972ecdb58902615ac6d4b4f9e9bc0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="pixeltype_8hh.html#ac37864f9a600d573902409fbd6fe9e97">EPixelType</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#a755972ecdb58902615ac6d4b4f9e9bc0">get_pixel_type</a> () const </td></tr>
<tr class="separator:a755972ecdb58902615ac6d4b4f9e9bc0"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9ffc5ecb67f9fb2bceb87b3f84ecf49b"><td class="memItemLeft" align="right" valign="top">virtual const <a class="el" href="3d_2vector_8hh.html#a34609a389450f4561ebf2b1e61a2b250">C3DBounds</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#a9ffc5ecb67f9fb2bceb87b3f84ecf49b">get_size</a> () const =0</td></tr>
<tr class="separator:a9ffc5ecb67f9fb2bceb87b3f84ecf49b"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1dbe519dfbadaa3df4ce0de073f6aaa0"><td class="memItemLeft" align="right" valign="top">virtual <a class="el" href="3d_2vector_8hh.html#ab7cc2a49dcd44008301d0e1e1dd4a8fb">C3DFVector</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#a1dbe519dfbadaa3df4ce0de073f6aaa0">get_voxel_size</a> () const =0</td></tr>
<tr class="separator:a1dbe519dfbadaa3df4ce0de073f6aaa0"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a65a13f3d252a96873a4ec9a311311013"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#a65a13f3d252a96873a4ec9a311311013">set_orientation</a> (<a class="el" href="group__basic.html#gac301135d3a1ae3d16be1f63b7792f6ec">E3DImageOrientation</a> orient)</td></tr>
<tr class="separator:a65a13f3d252a96873a4ec9a311311013"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aed47ce85ac94c34797ff16400bc6142e"><td class="memItemLeft" align="right" valign="top">virtual void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#aed47ce85ac94c34797ff16400bc6142e">set_voxel_size</a> (const <a class="el" href="3d_2vector_8hh.html#ab7cc2a49dcd44008301d0e1e1dd4a8fb">C3DFVector</a> &amp;voxel)=0</td></tr>
<tr class="memdesc:aed47ce85ac94c34797ff16400bc6142e"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the voxel size on world units  <a href="#aed47ce85ac94c34797ff16400bc6142e">More...</a><br/></td></tr>
<tr class="separator:aed47ce85ac94c34797ff16400bc6142e"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae0f79ee2ca73b92f0b029c96aa3bc7fb"><td class="memItemLeft" align="right" valign="top">virtual size_t&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#ae0f79ee2ca73b92f0b029c96aa3bc7fb">size</a> () const =0</td></tr>
<tr class="separator:ae0f79ee2ca73b92f0b029c96aa3bc7fb"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5e321c28763e4ddd8b9fb87d2cff8e84"><td class="memItemLeft" align="right" valign="top">virtual&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#a5e321c28763e4ddd8b9fb87d2cff8e84">~C3DImage</a> ()</td></tr>
<tr class="separator:a5e321c28763e4ddd8b9fb87d2cff8e84"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="inherit_header pub_methods_classCAttributedData"><td colspan="2" onclick="javascript:toggleInherit('pub_methods_classCAttributedData')"><img src="closed.png" alt="-"/>&#160;Public Member Functions inherited from <a class="el" href="classCAttributedData.html">CAttributedData</a></td></tr>
<tr class="memitem:a1ea5227b383bba1abaa00b6b2d946724 inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">CAttributeMap::const_iterator&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#a1ea5227b383bba1abaa00b6b2d946724">begin_attributes</a> () const </td></tr>
<tr class="separator:a1ea5227b383bba1abaa00b6b2d946724 inherit pub_methods_classCAttributedData"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a5a9d434214ec025614b2575c71fe771c inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#a5a9d434214ec025614b2575c71fe771c">delete_attribute</a> (const std::string &amp;key)</td></tr>
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<tr class="memitem:a2031b4a472766d0843cf248c8e9bb953 inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">CAttributeMap::const_iterator&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#a2031b4a472766d0843cf248c8e9bb953">end_attributes</a> () const </td></tr>
<tr class="separator:a2031b4a472766d0843cf248c8e9bb953 inherit pub_methods_classCAttributedData"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a6100afd0e13af2b713dc6422cbee2216 inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">const <a class="el" href="attributes_8hh.html#a8e2479e95252a094d72da87dff80a068">PAttribute</a>&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#a6100afd0e13af2b713dc6422cbee2216">get_attribute</a> (const std::string &amp;key) const </td></tr>
<tr class="separator:a6100afd0e13af2b713dc6422cbee2216 inherit pub_methods_classCAttributedData"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a1064bcfeb10ce2f1ca5ac5a8745593ff inherit pub_methods_classCAttributedData"><td class="memTemplParams" colspan="2">template&lt;typename T &gt; </td></tr>
<tr class="memitem:a1064bcfeb10ce2f1ca5ac5a8745593ff inherit pub_methods_classCAttributedData"><td class="memTemplItemLeft" align="right" valign="top">const T&#160;</td><td class="memTemplItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#a1064bcfeb10ce2f1ca5ac5a8745593ff">get_attribute_as</a> (const std::string &amp;key) const </td></tr>
<tr class="separator:a1064bcfeb10ce2f1ca5ac5a8745593ff inherit pub_methods_classCAttributedData"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ad9e6a1ddc332dafc88e722660fd7d922 inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">const std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#ad9e6a1ddc332dafc88e722660fd7d922">get_attribute_as_string</a> (const std::string &amp;key) const </td></tr>
<tr class="memdesc:ad9e6a1ddc332dafc88e722660fd7d922 inherit pub_methods_classCAttributedData"><td class="mdescLeft">&#160;</td><td class="mdescRight">returns the requested attribute as string, returns an empty string if attribute doesn't exist  <a href="#ad9e6a1ddc332dafc88e722660fd7d922">More...</a><br/></td></tr>
<tr class="separator:ad9e6a1ddc332dafc88e722660fd7d922 inherit pub_methods_classCAttributedData"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa4d12c15fab4bb384c6c77dc6a7163f9 inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">bool&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#aa4d12c15fab4bb384c6c77dc6a7163f9">has_attribute</a> (const std::string &amp;key) const </td></tr>
<tr class="separator:aa4d12c15fab4bb384c6c77dc6a7163f9 inherit pub_methods_classCAttributedData"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a227b66916e4dfc754d9cdf9077b048e6 inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top"><a class="el" href="classCAttributedData.html">CAttributedData</a> &amp;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#a227b66916e4dfc754d9cdf9077b048e6">operator=</a> (const <a class="el" href="classCAttributedData.html">CAttributedData</a> &amp;org)</td></tr>
<tr class="memdesc:a227b66916e4dfc754d9cdf9077b048e6 inherit pub_methods_classCAttributedData"><td class="mdescLeft">&#160;</td><td class="mdescRight">Assignemt operator.  <a href="#a227b66916e4dfc754d9cdf9077b048e6">More...</a><br/></td></tr>
<tr class="separator:a227b66916e4dfc754d9cdf9077b048e6 inherit pub_methods_classCAttributedData"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a58983aa9f3524c8d61843b67dba789d4 inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#a58983aa9f3524c8d61843b67dba789d4">set_attribute</a> (const std::string &amp;key, <a class="el" href="attributes_8hh.html#a8e2479e95252a094d72da87dff80a068">PAttribute</a> attr)</td></tr>
<tr class="separator:a58983aa9f3524c8d61843b67dba789d4 inherit pub_methods_classCAttributedData"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a58dd2ec6cdafa92a31d33f3157b43571 inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#a58dd2ec6cdafa92a31d33f3157b43571">set_attribute</a> (const std::string &amp;key, const std::string &amp;value)</td></tr>
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<tr class="memitem:ad42c74c46b6cebe013b9cf8fee2ee3f0 inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#ad42c74c46b6cebe013b9cf8fee2ee3f0">set_attributes</a> (CAttributeMap::const_iterator begin, CAttributeMap::const_iterator end)</td></tr>
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<tr class="memitem:a05910ef8952494ca14dbf1d9f8a5060b inherit pub_methods_classCAttributedData"><td class="memItemLeft" align="right" valign="top">&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classCAttributedData.html#a05910ef8952494ca14dbf1d9f8a5060b">CAttributedData</a> ()</td></tr>
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Static Public Attributes</h2></td></tr>
<tr class="memitem:a15b4c82a1201efbdb651ed94f991890b"><td class="memItemLeft" align="right" valign="top">static const char *&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="classC3DImage.html#a15b4c82a1201efbdb651ed94f991890b">data_descr</a></td></tr>
<tr class="memdesc:a15b4c82a1201efbdb651ed94f991890b"><td class="mdescLeft">&#160;</td><td class="mdescRight">data type description for the plug-in path component  <a href="#a15b4c82a1201efbdb651ed94f991890b">More...</a><br/></td></tr>
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Protected Member Functions</h2></td></tr>
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<tr class="memdesc:aef3f32a98401cd75ae98af5aaebfac2d"><td class="mdescLeft">&#160;</td><td class="mdescRight">standard constructor  <a href="#aef3f32a98401cd75ae98af5aaebfac2d">More...</a><br/></td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>The generic base type of a 3D image. </p>
<p>The base type of a 3D image with is used to move around the images in the code. This type is not prepared to hold actual data. Instead the templated type <a class="el" href="classT3DImage.html" title="Specific type of the 3D images that hold real pixel data. ">T3DImage</a> derived from this class is used to hold image data of a certain voxel type. </p>

<p>Definition at line <a class="el" href="3d_2image_8hh_source.html#l00044">44</a> of file <a class="el" href="3d_2image_8hh_source.html">3d/image.hh</a>.</p>
</div><h2 class="groupheader">Member Typedef Documentation</h2>
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<p>generic type for the dimension of the image </p>

<p>Definition at line <a class="el" href="3d_2image_8hh_source.html#l00066">66</a> of file <a class="el" href="3d_2image_8hh_source.html">3d/image.hh</a>.</p>

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          <td class="memname">typedef std::shared_ptr&lt;<a class="el" href="classC3DImage.html">C3DImage</a> &gt; <a class="el" href="classC3DImage.html#aa60c0c0b84a2e7fbc17e9a18cdb0cc7c">C3DImage::Pointer</a></td>
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<p>Pointer type of the image. </p>

<p>Definition at line <a class="el" href="3d_2image_8hh_source.html#l00069">69</a> of file <a class="el" href="3d_2image_8hh_source.html">3d/image.hh</a>.</p>

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<h2 class="groupheader">Constructor &amp; Destructor Documentation</h2>
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<p>Constructor to create the base sceleton of the image </p>
<dl class="params"><dt>Parameters</dt><dd>
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    <tr><td class="paramname">data</td><td>attributes (meta data) that belong to the image but is normally not required for processing </td></tr>
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<p>Constructor to create the base sceleton of the image </p>
<dl class="params"><dt>Parameters</dt><dd>
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<p>standard constructor </p>

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<h2 class="groupheader">Member Function Documentation</h2>
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<dl class="section return"><dt>Returns</dt><dd>a clone of the image with shared image data (copy-on-write is employed for iterator access) </dd></dl>

<p>Implemented in <a class="el" href="classT3DImage.html#a8752c1238251c0dc4787444537631cdc">T3DImage&lt; T &gt;</a>.</p>

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          <td class="memname"><a class="el" href="group__basic.html#gac301135d3a1ae3d16be1f63b7792f6ec">E3DImageOrientation</a> C3DImage::get_orientation </td>
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<dl class="section return"><dt>Returns</dt><dd>the orientation of the image </dd></dl>

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          <td class="memname"><a class="el" href="pixeltype_8hh.html#ac37864f9a600d573902409fbd6fe9e97">EPixelType</a> C3DImage::get_pixel_type </td>
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<dl class="section return"><dt>Returns</dt><dd>the type of the pixels(voxels) in the image </dd></dl>

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<dl class="section return"><dt>Returns</dt><dd>the 3D size of the image </dd></dl>

<p>Implemented in <a class="el" href="classT3DImage.html#a11740c301c14fae83c49442eb15c975e">T3DImage&lt; T &gt;</a>.</p>

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          <td class="memname">virtual <a class="el" href="3d_2vector_8hh.html#ab7cc2a49dcd44008301d0e1e1dd4a8fb">C3DFVector</a> C3DImage::get_voxel_size </td>
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<dl class="section return"><dt>Returns</dt><dd>the voxel size in world units </dd></dl>

<p>Implemented in <a class="el" href="classT3DImage.html#a15978d83b2d9b0af3f7fa3149bcb7e7b">T3DImage&lt; T &gt;</a>.</p>

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          <td class="memname">void C3DImage::set_orientation </td>
          <td>(</td>
          <td class="paramtype"><a class="el" href="group__basic.html#gac301135d3a1ae3d16be1f63b7792f6ec">E3DImageOrientation</a>&#160;</td>
          <td class="paramname"><em>orient</em></td><td>)</td>
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<p>Set the orientation of the image </p>
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<dl class="section remark"><dt>Remarks</dt><dd>orientation is currently not really used </dd></dl>

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          <td class="paramtype">const <a class="el" href="3d_2vector_8hh.html#ab7cc2a49dcd44008301d0e1e1dd4a8fb">C3DFVector</a> &amp;&#160;</td>
          <td class="paramname"><em>voxel</em></td><td>)</td>
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<p>set the voxel size on world units </p>

<p>Implemented in <a class="el" href="classT3DImage.html#a29640dfde6e8ce82dcf029c78fcdc3aa">T3DImage&lt; T &gt;</a>.</p>

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<dl class="section return"><dt>Returns</dt><dd>the number of voxels </dd></dl>

<p>Implemented in <a class="el" href="classT3DImage.html#a58ebd259f39263b36d5b096a53803328">T3DImage&lt; T &gt;</a>.</p>

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<h2 class="groupheader">Field Documentation</h2>
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<p>data type description for the plug-in path component </p>

<p>Definition at line <a class="el" href="3d_2image_8hh_source.html#l00063">63</a> of file <a class="el" href="3d_2image_8hh_source.html">3d/image.hh</a>.</p>

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<hr/>The documentation for this class was generated from the following file:<ul>
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