/usr/share/perl5/Genome/Model/Tools.pm is in libgenome-perl 0.06-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 | package Genome::Model::Tools;
use strict;
use warnings;
use Genome;
our $VERSION = $Genome::VERSION;
class Genome::Model::Tools {
is => 'Command::Tree',
doc => 'bioinformatics tools for genomics'
};
sub help_sub_commands {
my $self = shift;
my $txt = $self->SUPER::help_sub_commands(@_);
unless ($txt) {
$txt = "ERROR: *** no genome modeling tools installed yet! ***";
}
return $txt;
}
sub doc_copyright_license {
return <<EOS
Copyright (C) 2007-2011 Washington University in St. Louis.
It is released under the Lesser GNU Public License (LGPL) version 3. See the
associated LICENSE file in this distribution.
EOS
}
1;
=pod
=head1 NAME
Genome::Model::Tools - base namespace for command modules
=head1 DESCRIPTION
Modules with names starting with Genome::Model::Tools are directly invokable by
the "genome" command, installed with the core Genome package.
These modules all inherit from Command and use UR for their class definitions.
=over 4
=item
Copy the Example1.pm.template to Example1.pm and try "gmt" in the same directory
for an example tool.
=item
See B<Command> for details on how to write commands.
=item
See B<UR> for details on writing UR classes in general.
=back
=head1 AUTHORS
This software is developed by the analysis and engineering teams at
The Genome Center at Washington Univiersity in St. Louis, with funding from
the National Human Genome Research Institute.
=head1 LICENSE
This software is copyright Washington University in St. Louis. It is released under
the Lesser GNU Public License (LGPL) version 3. See the associated LICENSE file in
this distribution.
=head1 BUGS
For defects with any software in the genome namespace,
contact genome-dev@genome.wustl.edu.
=head1 SEE ALSO
B<genome>, B<Genome>
=cut
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