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/usr/share/genometools/gtdata/trans/TransProt4 is in genometools-common 1.5.1-2ubuntu1.

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# 4-character functional alphabet
# A (acidic), C (basic), H (hydrophobic), P (polar)
DE A
HKR C
AFILMPVWJ H
CGNQSTY P
XUBZO*- x