/usr/share/genometools/gtdata/doc/chseqids.lua is in genometools-common 1.5.1-2ubuntu1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | print ([[
File format for mapping_file:
The supplied mapping file defines a mapping table named ``chseqids''. It maps
the sequence-regions given in the GFF3_file to other names. It can be defined
as follows:
chseqids = {
chr1 = "seq1",
chr2 = "seq2"
}
When this example is used, all sequence ids ``chr1'' will be changed to ``seq1''
and all sequence ids ``chr2'' to ``seq2''.]])
|