This file is indexed.

/usr/share/gdis/models/oxalate.gin is in gdis-data 0.90-5.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
# 
# Keywords:
# 
opti conp mole comp
# 
# Options:
# 

output arc oxal_full

name calcium oxalate
cell
   6.290000  14.583000  10.116000  90.000000 109.460000  90.000000
fractional   20
Ca    core 0.9676000 0.1242999 0.0546000 2.00000000 1.00000 0.00000             
Ca    core 0.9968000 0.1235999 0.4357000 2.00000000 1.00000 0.00000             
C     core 0.9832000 0.3201000 0.2452000 0.60000000 1.00000 0.00000             
C     core 0.0008999 0.4269999 0.2492000 0.60000000 1.00000 0.00000             
C     core 0.5189000 0.1265999 0.1812000 0.60000000 1.00000 0.00000             
C     core 0.4504999 0.1173000 0.3131000 0.60000000 1.00000 0.00000             
O1    core 0.9756000 0.2826000 0.1321998 -0.8000000 1.00000 0.00000             
O1    core 0.0065998 0.4658999 0.1394999 -0.8000000 1.00000 0.00000             
O1    core 0.9799000 0.2819000 0.3550000 -0.8000000 1.00000 0.00000             
O1    core 0.0072998 0.4657999 0.3613999 -0.8000000 1.00000 0.00000             
O1    core 0.3613999 0.1417999 0.0690000 -0.8000000 1.00000 0.00000             
O1    core 0.7245000 0.1227000 0.1974000 -0.8000000 1.00000 0.00000             
O1    core 0.2438000 0.1228999 0.2957000 -0.8000000 1.00000 0.00000             
O1    core 0.6073000 0.1067999 0.4263998 -0.8000000 1.00000 0.00000             
O2    core 0.3932000 0.3459000 0.1021999 -0.7642613 1.00000 0.00000             
O2    core 0.5913000 0.3828998 0.3908000 -0.7642613 1.00000 0.00000             
H     core 0.4896010 0.3709538 0.0460530 0.38213015 1.00000 0.00000             
H     core 0.4307239 0.2805119 0.0953809 0.38213015 1.00000 0.00000             
H     core 0.4764569 0.3773999 0.4411579 0.38213015 1.00000 0.00000             
H     core 0.4926800 0.3776620 0.2911780 0.38213015 1.00000 0.00000             
space
P 21/C          
observables
frequency 
    1     0.0000
frequency 
    2     0.0000
frequency 
    3     0.0000
end
name sodium oxalate
cell
   3.449000   5.243000  10.375000  90.000000  92.660000  90.000000
fractional    4
Na    core 0.3019999 0.0564999 0.3551999 1.00000000 1.00000 0.00000             
O1    core 0.1656998 0.8778000 0.1510999 -0.8000000 1.00000 0.00000             
O1    core 0.2273999 0.2704000 0.0691000 -0.8000000 1.00000 0.00000             
C     core 0.1135000 0.0434999 0.0633999 0.60000000 1.00000 0.00000             
space
 14
origin 2
name potassium oxalate
cell
   9.222000   6.197000  10.690000  90.000000 110.700000  90.000000
fractional    6
K     core 0.1319999 0.8301999 0.1320999 1.00000000 1.00000 0.00000             
O1    core 0.1262000 0.2697000 0.0914999 -0.8000000 1.00000 0.00000             
O1    core 0.3196998 0.4864999 0.0926000 -0.8000000 1.00000 0.00000             
O2    core 0.0000000 0.4958000 0.2500000 -0.7642613 1.00000 0.00000             
C     core 0.2342998 0.3254999 0.0527999 0.60000000 1.00000 0.00000             
H     core 0.0350000 0.4039999 0.1936999 0.38213015 1.00000 0.00000             
space
C 2/C           
species   7
Ca     core    2.000000            
Na     core    1.000000            
K      core    1.000000            
O1     core   -0.800000            
O2     core   -0.764261            
C      core    0.600000            
H      core    0.382130            
buck inter     
C     core C     core  993.63011     0.240472 10.055      0.000 15.000 1 1 0
buck inter     
C     core O1    core  604.56823     0.278199 13.562      0.000 15.000 1 1 0
buck inter     
C     core O2    core  1130.7548     0.246409 18.637      0.000 15.000 1 1 0
buck inter     
O1    core O1    core  5161.9633     0.222373 19.968      0.000 15.000 1 1 0
buck inter     
O1    core O2    core  482.14605     0.370000  23.000      0.000 15.000 1 1 0
buck inter     
O2    core O2    core  10520.550     0.261400 50.286      0.000 15.000 1 1 0

buck inter     
O1    core Ca    core  1976.9077     0.283009 .00000E+00  0.000 15.000 1 1 0
buck inter     
O2    core Ca    core  2652.6303     0.275265 .00000E+00  0.000 15.000 1 1 0

buck inter     
O1    core Na    core  2501.7615     0.248800 .00000E+00  0.000 15.000 0 0 0
buck inter     
C     core Na    core  730.60340     0.306000 .00000E+00  0.000 15.000 0 0 0

buck inter     
O1    core K     core   1959.291     0.286601 14.000    0.000 15.000 0 0 0
buck inter     
O2    core K     core  12287.957     0.244061 25.000    0.000 15.000 0 0 0
buck inter     
C     core K     core   6300.000     0.257758  0.000    0.000 15.000 0 0 0

# intra water potentials

harmonic molmec 
H    O2    23.71711     0.96  0 0
three molmec 
O2   H   H  2.45050   104.5   0 0


# intra oxalate potentials
# dmol oxalate intra
harmonic bond
C   O1        52.721    1.27800    0 0
harmonic bond
C   C         29.289    1.56400    0 0
three bond 
C   O1  O1     6.895   127.20    0 0
three bond 
C   C   O1    12.042   116.80    0 0
torsion bond 
O1  C   C   O1    0.020142   -2 0  0
torsion intra
C   C   O1  O1    0.296115   -2 0  1.80 1.60 2.40 3.00 0


observables
weight    15
   1   2   3   4   5   6   7  68
  69  70  71  84  85  86  87
    10.000     10.000     10.000  15000.000  15000.000  40000.000   4000.000
 40000.000  35000.000  15000.000   4000.000  50000.000  15000.000  40000.000
  4000.000
end
element
covalent 11  0.1000
covalent 19  0.1000
covalent 20  0.1000
end
print    1
switch_min rfo  gnorm     0.100000