/usr/share/doc/garlic-doc/commands/cat.html is in garlic-doc 1.6-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 | <html>
<head>
<title>
CAT, CATCH
</title>
</head>
<h1 align=center>
CAT, CATCH
</h1>
<hr size="3">
<font color=#880000>
<b>
NAME
<br>
</b>
</font>
CAT, CATCH - catch the specified macromolecular complex.
<br><br>
<font color=#880000>
<b>
SYNOPSIS
<br>
</b>
</font>
CAT identifier
<br>
CATCH identifier
<br><br>
<font color=#880000>
<b>
DESCRIPTION
<br>
</b>
</font>
Catch the specified structure (macromolecular complex). The structure is a
set of atoms read from a single file. Thus, every file is treated as a
separate structure. The structure identifier is positive integer.
The value zero is not used; structures are numbered 1, 2, 3, etc. When you
catch a single structure, all transformations (rotations, translations etc.)
are applied to this structure, leaving other structures intact. Selection
(commands SELECT, ADD, RESTRICT) are also applied only to this structure.
The command CATCH is used when working with more than one structure - for
example, when docking an inhibitor to a substrate. When only one structure
(file) is loaded, this command has no purpose. Examples:
<br><br>
<table border=2 cellspacing=2 cellpading=0>
<td align="left">
COMMAND
</td>
<td align="left">
DESCRIPTION
</td>
<tr>
<td align="left">
cat 1
</td>
<td align="left">
Catch the structure number 1.
</td>
<tr>
<td align="left">
cat 7
</td>
<td align="left">
Catch the structure number 7.
</td>
</table>
<br>
<font color=#880000>
<b>
NOTES
<br>
</b>
</font>
(1) Sometimes you will forget the identifiers, especially when working
with many structures. Move the mouse pointer over the structure you want to
catch. The identifier will be displayed in the output window (bottom right
corner of the garlic window). The number in parentheses is the identifier
you need. In the example below, the identifier is equal to one.
<br>
<img src="id.gif">
<br><br>
(2) The command CATCH resets the editing mode to default (no editing).
<br><br>
<font color=#880000>
<b>
RELATED COMMANDS
<br>
</b>
</font>
TAK (TAKE) does exactly the same job as CATCH. DIS (DISCARD) is used to
discard the macromolecular complex (structure). GRO (GROUP) is used to
catch more than one structure simultaneously.
<br><br>
<hr size="3">
</html>
|