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/usr/share/crawl/dat/defaults/misc.txt is in crawl-common 2:0.13.1-1.

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drop_filter += useless_item

auto_exclude += oklob,statue,roxanne,hyperactive,lightning spire
auto_exclude += mimic

# Interrupting run and rest compound commands:
runrest_ignore_poison  = 2:30
runrest_ignore_monster += ^butterfly$:1

trapwalk_safe_hp = dart:20,needle:15,arrow:35,bolt:45,spear:40,blade:95

sort_menus += inv: true : equipped, freshness, charged

note_items    += rod of, acquirement, preservation, running, of Zot
note_messages += Your scales start
note_messages += protects you from harm
note_messages += You fall through a shaft
note_monsters += orb of fire, ancient lich, Sigmund