/usr/share/perl5/Biber/Entry.pm is in biber 1.8-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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use v5.16;
use strict;
use warnings;
use Biber::Utils;
use Biber::Internals;
use Biber::Constants;
use Data::Dump qw( pp );
use Digest::MD5 qw( md5_hex );
use Log::Log4perl qw( :no_extra_logdie_message );
use List::Util qw( first );
use Storable qw( dclone );
my $logger = Log::Log4perl::get_logger('main');
=encoding utf-8
=head1 NAME
Biber::Entry - Biber::Entry objects
=head2 new
Initialize a Biber::Entry object
There are three types of field possible in an entry:
* raw - These are direct copies of input fields with no processing performed on them.
Such fields are used for tool mode where we don't want to alter the fields as they
need to go back into the output as they are
* data - These are fields which derive directly from or are themselves fields in the
data souce. Things like YEAR, MONTH, DAY etc. are such fields which are derived from,
for example, the DATE field (which is itself a "raw" field). They are part of the
original data implicitly, derived from a "raw" field.
* other - These are fields, often meta-information like labelname, labelalpha etc. which are
more removed from the data fields.
The reason for this division is largely the entry cloning required for the related entry and
inheritance features. When we clone an entry or copy some fields from one entry to another
we generally don't want the "other" category as such derived meta-fields will often need
to be re-created or ignored so we need to know which are the actual "data" fields to copy/clone.
"raw" fields are important when we are writing bibtex format output (in tool mode for example)
since in such cases, we don't want to derive implicit fields like YEAR/MONTH from DATE.
=cut
sub new {
my $class = shift;
my $obj = shift;
my $self;
if (defined($obj) and ref($obj) eq 'HASH') {
$self = bless $obj, $class;
}
else {
$self = bless {}, $class;
}
return $self;
}
=head2 relclone
Recursively create related entry clones starting with an entry
=cut
sub relclone {
my $self = shift;
my $citekey = $self->get_field('citekey');
my $secnum = $Biber::MASTER->get_current_section;
my $section = $Biber::MASTER->sections->get_section($secnum);
if (my $relkeys = $self->get_field('related')) {
$logger->debug("Found RELATED field in '$citekey' with contents " . join(',', @$relkeys));
my @clonekeys;
foreach my $relkey (@$relkeys) {
# Resolve any alias
my $nrelkey = $section->get_citekey_alias($relkey) // $relkey;
$logger->debug("Resolved RELATED key alias '$relkey' to '$nrelkey'") if $relkey ne $nrelkey;
$relkey = $nrelkey;
$logger->debug("Looking at RELATED key '$relkey'");
# Loop avoidance, in case we are back in an entry again in the guise of a clone
# We can record the related clone but don't create it again
if (my $ck = $section->get_keytorelclone($relkey)) {
$logger->debug("Found RELATED key '$relkey' already has clone '$ck'");
push @clonekeys, $ck;
# Save graph information if requested
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('related', $ck, $relkey, $citekey);
}
}
else {
my $relentry = $section->bibentry($relkey);
my $clonekey = md5_hex($relkey);
push @clonekeys, $clonekey;
my $relclone = $relentry->clone($clonekey);
$logger->debug("Created new related clone for '$relkey' with clone key '$clonekey'");
# Set related clone options
if (my $relopts = $self->get_field('relatedoptions')) {
process_entry_options($clonekey, $relopts);
$relclone->set_datafield('options', $relopts);
}
else {
process_entry_options($clonekey, [ 'skiplab', 'skiplos', 'uniquename=0', 'uniquelist=0' ]);
$relclone->set_datafield('options', [ 'dataonly' ]);
}
$section->bibentries->add_entry($clonekey, $relclone);
$section->keytorelclone($relkey, $clonekey);
# Save graph information if requested
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('related', $clonekey, $relkey, $citekey);
}
# recurse so we can do cascading related entries
$logger->debug("Recursing into RELATED entry '$clonekey'");
$relclone->relclone;
}
}
# point to clone keys and add to citekeys
# We have to add the citekeys as we need these clones in the .bbl
# but the dataonly will cause biblatex not to print them in the bib
$section->add_citekeys(@clonekeys);
$self->set_datafield('related', [ @clonekeys ]);
}
}
=head2 clone
Clone a Biber::Entry object and return a copy
Accepts optionally a key for the copy
=cut
sub clone {
my $self = shift;
my $newkey = shift;
my $new = new Biber::Entry;
while (my ($k, $v) = each(%{$self->{datafields}})) {
$new->{datafields}{$k} = dclone($v);
}
while (my ($k, $v) = each(%{$self->{rawfields}})) {
$new->{rawfields}{$k} = dclone($v);
}
while (my ($k, $v) = each(%{$self->{origfields}})) {
$new->{origfields}{$k} = dclone($v);
}
# Need to add entrytype and datatype
$new->{derivedfields}{entrytype}{original}{default} = $self->{derivedfields}{entrytype}{original}{default};
$new->{derivedfields}{datatype}{original}{default} = $self->{derivedfields}{datatype}{original}{default};
# put in key if specified
if ($newkey) {
$new->{derivedfields}{citekey}{original}{default} = $newkey;
}
# Record the key of the source of the clone in the clone. Useful for loop detection etc.
# in biblatex
$new->{derivedfields}{clonesourcekey}{original}{default} = $self->get_field('citekey');
return $new;
}
=head2 notnull
Test for an empty object
=cut
sub notnull {
my $self = shift;
my @arr = keys %$self;
return $#arr > -1 ? 1 : 0;
}
=head2 set_labelname_info
Record the labelname information. This is special
meta-information so we have a seperate method for this
Takes a hash ref with the information.
=cut
sub set_labelname_info {
my $self = shift;
my $data = shift;
$data->{form} = $data->{form} || 'original';
$data->{lang} = $data->{lang} || 'default';
$self->{labelnameinfo} = $data;
return;
}
=head2 get_labelname_info
Retrieve the labelname information. This is special
meta-information so we have a seperate method for this
Returns a hash ref with the information.
=cut
sub get_labelname_info {
my $self = shift;
return $self->{labelnameinfo};
}
=head2 set_labelnamefh_info
Record the fullhash labelname information. This is special
meta-information so we have a seperate method for this
Takes a hash ref with the information.
=cut
sub set_labelnamefh_info {
my $self = shift;
my $data = shift;
$data->{form} = $data->{form} || 'original';
$data->{lang} = $data->{lang} || 'default';
$self->{labelnamefhinfo} = $data;
return;
}
=head2 get_labelnamefh_info
Retrieve the fullhash labelname information. This is special
meta-information so we have a seperate method for this
Returns a hash ref with the information.
=cut
sub get_labelnamefh_info {
my $self = shift;
return $self->{labelnamefhinfo};
}
=head2 set_labeltitle_info
Record the labeltitle information. This is special
meta-information so we have a seperate method for this
Takes a hash ref with the information.
=cut
sub set_labeltitle_info {
my $self = shift;
my $data = shift;
$data->{form} = $data->{form} || 'original';
$data->{lang} = $data->{lang} || 'default';
$self->{labeltitleinfo} = $data;
return;
}
=head2 get_labeltitle_info
Retrieve the labeltitle information. This is special
meta-information so we have a seperate method for this
Returns a hash ref with the information.
=cut
sub get_labeltitle_info {
my $self = shift;
return $self->{labeltitleinfo};
}
=head2 set_labeldate_info
Record the labeldate information. This is special
meta-information so we have a seperate method for this
Takes a hash ref with the information.
=cut
sub set_labeldate_info {
my $self = shift;
my $data = shift;
$data->{form} = $data->{form} || 'original';
$data->{lang} = $data->{lang} || 'default';
$self->{labeldateinfo} = $data;
return;
}
=head2 get_labeldate_info
Retrieve the labeldate information. This is special
meta-information so we have a seperate method for this
Returns a hash ref with the information.
=cut
sub get_labeldate_info {
my $self = shift;
return $self->{labeldateinfo};
}
=head2 set_field
Set a derived field for a Biber::Entry object, that is, a field
which was not an actual bibliography field
=cut
sub set_field {
my $self = shift;
my ($key, $val, $form, $lang) = @_;
$form = $form || 'original';
$lang = $lang || 'default';
# All derived fields can be null
$self->{derivedfields}{$key}{$form}{$lang} = $val;
return;
}
=head2 get_field
Get a field for a Biber::Entry object
Uses // as fields can be null (end dates etc).
=cut
sub get_field {
no autovivification;
my $self = shift;
my ($key, $form, $lang) = @_;
return undef unless $key;
$form = $form || 'original';
$lang = $lang || 'default';
# Override for special fields whose form and langs are assumed to be already resolved.
if ( first {$key eq $_} ( 'labelname', 'labeltitle', 'labelyear', 'labelmonth', 'labelday' )) {
$form = 'original';
$lang = 'default';
}
return $self->{datafields}{$key}{$form}{$lang} //
$self->{derivedfields}{$key}{$form}{$lang} //
$self->{rawfields}{$key};
}
=head2 get_field_forms
Get all field forms for a Biber::Entry object field
=cut
sub get_field_forms {
no autovivification;
my $self = shift;
my $key = shift;
return undef unless $key;
return $self->{datafields}{$key} ||
$self->{derivedfields}{$key};
}
=head2 get_field_form_names
Get all field form names for a Biber::Entry object field
=cut
sub get_field_form_names {
no autovivification;
my $self = shift;
my $key = shift;
return undef unless $key;
return sort keys %{$self->{datafields}{$key} ||
$self->{derivedfields}{$key} ||
{}};
}
=head2 get_field_form_lang_names
Get all field lang names for a Biber::Entry object field and form
=cut
sub get_field_form_lang_names {
no autovivification;
my $self = shift;
my ($key, $form) = @_;
return undef unless $key;
return undef unless $form;
return sort keys %{$self->{datafields}{$key}{$form} ||
$self->{derivedfields}{$key}{$form} ||
{}};
}
=head2 set_datafield
Set a field which is in the .bib data file
=cut
sub set_datafield {
my $self = shift;
my ($key, $val, $form, $lang) = @_;
$form = $form || 'original';
$lang = $lang || 'default';
$self->{datafields}{$key}{$form}{$lang} = $val;
return;
}
=head2 set_datafield_forms
Set all forms of a field which is in the bib data file
=cut
sub set_datafield_forms {
my $self = shift;
my ($key, $val) = @_;
$self->{datafields}{$key} = $val;
return;
}
=head2 set_rawfield
Save a copy of the raw field from the datasource
=cut
sub set_rawfield {
my $self = shift;
my ($key, $val) = @_;
$self->{rawfields}{$key} = $val;
return;
}
=head2 get_rawfield
Get a raw field
=cut
sub get_rawfield {
no autovivification;
my $self = shift;
my $key = shift;
return $self->{rawfields}{$key};
}
=head2 get_datafield
Get a field that was in the original data file
=cut
sub get_datafield {
no autovivification;
my $self = shift;
my ($key, $form, $lang) = @_;
$form = $form || 'original';
$lang = $lang || 'default';
return $self->{datafields}{$key}{$form}{$lang};
}
=head2 del_field
Delete a field in a Biber::Entry object
=cut
sub del_field {
my $self = shift;
my $key = shift;
delete $self->{datafields}{$key};
delete $self->{derivedfields}{$key};
delete $self->{rawfields}{$key};
return;
}
=head2 del_datafield
Delete an original data source data field in a Biber::Entry object
=cut
sub del_datafield {
my $self = shift;
my $key = shift;
delete $self->{datafields}{$key};
return;
}
=head2 field_exists
Check whether a field exists (even if null)
=cut
sub field_exists {
no autovivification;
my $self = shift;
my $key = shift;
return ($self->{datafields}{$key} ||
$self->{derivedfields}{$key} ||
$self->{rawfields}{$key}) ? 1 : 0;
}
=head2 field_form_exists
Check whether a representation form for a field exists (even if null)
=cut
sub field_form_exists {
no autovivification;
my $self = shift;
my ($key, $form) = @_;
$form = $form || 'original';
return ($self->{datafields}{$key}{$form} ||
$self->{derivedfields}{$key}{$form}) ? 1 : 0;
}
=head2 datafields
Returns a sorted array of the fields which came from the data source
=cut
sub datafields {
my $self = shift;
use locale;
return sort keys %{$self->{datafields}};
}
=head2 rawfields
Returns a sorted array of the raw fields and contents
=cut
sub rawfields {
my $self = shift;
use locale;
return sort keys %{$self->{rawfields}};
}
=head2 count_datafields
Returns the number of datafields
=cut
sub count_datafields {
my $self = shift;
return keys %{$self->{datafields}};
}
=head2 fields
Returns a sorted array of all field names, including ones
added during processing which are not necessarily fields
which came from the data file
=cut
sub fields {
my $self = shift;
use locale;
my %keys = (%{$self->{derivedfields}}, %{$self->{datafields}});
return sort keys %keys;
}
=head2 count_fields
Returns the number of fields
=cut
sub count_fields {
my $self = shift;
my %keys = (%{$self->{derivedfields}}, %{$self->{datafields}});
return keys %keys;
}
=head2 has_keyword
Check if a Biber::Entry object has a particular keyword in
in the KEYWORDS field.
=cut
sub has_keyword {
no autovivification;
my $self = shift;
my ($keyword, $form, $lang) = @_;
$form = $form || 'original';
$lang = $lang || 'default';
if (my $keywords = $self->{datafields}{keywords}{$form}{$lang}) {
return (first {$_ eq $keyword} @$keywords) ? 1 : 0;
}
else {
return 0;
}
return undef; # shouldn't get here
}
=head2 add_warning
Append a warning to a Biber::Entry object
=cut
sub add_warning {
my $self = shift;
my $warning = shift;
push @{$self->{derivedfields}{warnings}{original}{default}}, $warning;
return;
}
=head2 set_inherit_from
Inherit fields from parent entry
$entry->set_inherit_from($parententry);
Takes a second Biber::Entry object as argument
Tailored for set inheritance which is a straight 1:1 inheritance,
excluding certain fields for backwards compatibility
=cut
sub set_inherit_from {
my $self = shift;
my $parent = shift;
# Data source fields
foreach my $field ($parent->datafields) {
next if $self->field_exists($field); # Don't overwrite existing fields
$self->set_datafield_forms($field, dclone($parent->get_field_forms($field)));
}
# Datesplit is a special non datafield and needs to be inherited for any
# validation checks which may occur later
if (my $ds = $parent->get_field('datesplit')) {
$self->set_field('datesplit', $ds);
}
return;
}
=head2 resolve_xdata
Recursively resolve XDATA fields in an entry
$entry->resolve_xdata($xdata_entry);
=cut
sub resolve_xdata {
my ($self, $xdata) = @_;
my $secnum = $Biber::MASTER->get_current_section;
my $section = $Biber::MASTER->sections->get_section($secnum);
my $entry_key = $self->get_field('citekey');
foreach my $xdatum (@$xdata) {
unless (my $xdatum_entry = $section->bibentry($xdatum)) {
biber_warn("Entry '$entry_key' references XDATA entry '$xdatum' which does not exist in section $secnum");
next;
}
else {
# Skip xdata inheritance if we've already done it
# This will only ever be between two XDATA entrytypes since we
# always start at a non-XDATA entrytype, which we'll not look at again
# and recursion is always between XDATA entrytypes.
next if Biber::Config->get_inheritance('xdata', $xdatum, $entry_key);
# record the XDATA resolve between these entries to prevent loops
Biber::Config->set_inheritance('xdata', $xdatum, $entry_key);
# Detect XDATA loops
unless (Biber::Config->is_inheritance_path('xdata', $entry_key, $xdatum)) {
if (my $recurse_xdata = $xdatum_entry->get_field('xdata')) { # recurse
$xdatum_entry->resolve_xdata($recurse_xdata);
}
# For tool mode with bibtex output we need to copy the raw fields
if (Biber::Config->getoption('tool') and
Biber::Config->getoption('output_format') eq 'bibtex') {
foreach my $field ($xdatum_entry->rawfields()) { # set raw fields
next if $field eq 'ids'; # Never inherit aliases
$self->set_rawfield($field, $xdatum_entry->get_rawfield($field));
$logger->debug("Setting field '$field' in entry '$entry_key' via XDATA");
}
}
else {
foreach my $field ($xdatum_entry->datafields()) { # set fields
next if $field eq 'ids'; # Never inherit aliases
$self->set_datafield_forms($field, $xdatum_entry->get_field_forms($field));
# Record graphing information if required
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('xdata', $xdatum_entry->get_field('citekey'), $entry_key, $field, $field);
}
$logger->debug("Setting field '$field' in entry '$entry_key' via XDATA");
}
}
}
else {
biber_error("Circular XDATA inheritance between '$xdatum'<->'$entry_key'");
}
}
}
}
=head2 inherit_from
Inherit fields from parent entry (as indicated by the crossref field)
$entry->inherit_from($parententry);
Takes a second Biber::Entry object as argument
Uses the crossref inheritance specifications from the .bcf
=cut
sub inherit_from {
my ($self, $parent) = @_;
my $secnum = $Biber::MASTER->get_current_section;
my $section = $Biber::MASTER->sections->get_section($secnum);
my $target_key = $self->get_field('citekey'); # target/child key
my $source_key = $parent->get_field('citekey'); # source/parent key
# record the inheritance between these entries to prevent loops and repeats.
Biber::Config->set_inheritance('crossref', $source_key, $target_key);
# Detect crossref loops
unless (Biber::Config->is_inheritance_path('crossref', $target_key, $source_key)) {
# cascading crossrefs
if (my $ppkey = $parent->get_field('crossref')) {
$parent->inherit_from($section->bibentry($ppkey));
}
}
else {
biber_error("Circular inheritance between '$source_key'<->'$target_key'");
}
my $type = $self->get_field('entrytype');
my $parenttype = $parent->get_field('entrytype');
my $inheritance = Biber::Config->getblxoption('inheritance');
my %processed;
# get defaults
my $defaults = $inheritance->{defaults};
# global defaults ...
my $inherit_all = $defaults->{inherit_all};
my $override_target = $defaults->{override_target};
# override with type_pair specific defaults if they exist ...
foreach my $type_pair (@{$defaults->{type_pair}}) {
if (($type_pair->{source} eq '*' or $type_pair->{source} eq $parenttype) and
($type_pair->{target} eq '*' or $type_pair->{target} eq $type)) {
$inherit_all = $type_pair->{inherit_all} if $type_pair->{inherit_all};
$override_target = $type_pair->{override_target} if $type_pair->{override_target};
}
}
# First process any fields that have special treatment
foreach my $inherit (@{$inheritance->{inherit}}) {
# Match for this combination of entry and crossref parent?
foreach my $type_pair (@{$inherit->{type_pair}}) {
if (($type_pair->{source} eq '*' or $type_pair->{source} eq $parenttype) and
($type_pair->{target} eq '*' or $type_pair->{target} eq $type)) {
foreach my $field (@{$inherit->{field}}) {
next unless $parent->field_exists($field->{source});
$processed{$field->{source}} = 1;
# localise defaults according to field, if specified
my $field_override_target = $field->{override_target} // 'false';
# Skip this field if requested
if ($field->{skip}) {
$processed{$field->{source}} = 1;
}
# Set the field if it doesn't exist or override is requested
elsif (not $self->field_exists($field->{target}) or
$field_override_target eq 'true') {
$logger->debug("Entry '$target_key' is inheriting field '" .
$field->{source}.
"' as '" .
$field->{target} .
"' from entry '$source_key'");
# For tool mode with bibtex output we need to copy the raw fields
if (Biber::Config->getoption('tool') and
Biber::Config->getoption('output_format') eq 'bibtex') {
$self->set_rawfield($field->{target}, $parent->get_rawfield($field->{source}));
}
else {
$self->set_datafield_forms($field->{target}, $parent->get_field_forms($field->{source}));
}
# Record graphing information if required
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('crossref', $source_key, $target_key, $field->{source}, $field->{target});
}
}
}
}
}
}
# Now process the rest of the (original data only) fields, if necessary
if ($inherit_all eq 'true') {
my @fields;
if (Biber::Config->getoption('tool')) {
@fields = $parent->rawfields;
}
else {
@fields = $parent->datafields;
}
foreach my $field (@fields) {
next if $processed{$field}; # Skip if we have already dealt with this field above
# Set the field if it doesn't exist or override is requested
if (not $self->field_exists($field) or $override_target eq 'true') {
$logger->debug("Entry '$target_key' is inheriting field '$field' from entry '$source_key'");
# For tool mode with bibtex output we need to copy the raw fields
if (Biber::Config->getoption('tool') and
Biber::Config->getoption('output_format') eq 'bibtex') {
$self->set_rawfield($field, $parent->get_rawfield($field));
}
else {
$self->set_datafield_forms($field, $parent->get_field_forms($field));
}
# Record graphing information if required
if (Biber::Config->getoption('output_format') eq 'dot') {
Biber::Config->set_graph('crossref', $source_key, $target_key, $field, $field);
}
}
}
}
# Datesplit is a special non datafield and needs to be inherited for any
# validation checks which may occur later
if (my $ds = $parent->get_field('datesplit')) {
$self->set_field('datesplit', $ds);
}
return;
}
=head2 dump
Dump Biber::Entry object
=cut
sub dump {
my $self = shift;
return pp($self);
}
1;
__END__
=head1 AUTHORS
François Charette, C<< <firmicus at ankabut.net> >>
Philip Kime C<< <philip at kime.org.uk> >>
=head1 BUGS
Please report any bugs or feature requests on our sourceforge tracker at
L<https://sourceforge.net/tracker2/?func=browse&group_id=228270>.
=head1 COPYRIGHT & LICENSE
Copyright 2009-2013 François Charette and Philip Kime, all rights reserved.
This module is free software. You can redistribute it and/or
modify it under the terms of the Artistic License 2.0.
This program is distributed in the hope that it will be useful,
but without any warranty; without even the implied warranty of
merchantability or fitness for a particular purpose.
=cut
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