/usr/lib/R/site-library/limma/NAMESPACE is in r-bioc-limma 3.10.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 | # All functions exported other than those starting with "."
exportPattern("^[^\\.]")
exportClasses("RGList","MAList","EListRaw","EList","MArrayLM","TestResults","LargeDataObject","Roast","MDS")
exportMethods("show")
S3method("[",MAList)
S3method("[",MArrayLM)
S3method("[",RGList)
S3method("[",EList)
S3method("[",EListRaw)
S3method(anova,MAList)
S3method(as.data.frame,MArrayLM)
S3method(as.matrix,MAList)
S3method(as.matrix,EList)
S3method(as.matrix,EListRaw)
S3method(as.matrix,MArrayLM)
S3method(as.matrix,marrayNorm)
S3method(as.matrix,PLMset)
S3method(as.matrix,RGList)
S3method(as.matrix,ExpressionSet)
S3method(as.matrix,LumiBatch)
S3method(as.matrix,vsn)
S3method(avedups,MAList)
S3method(avedups,EList)
S3method(avereps,MAList)
S3method(avereps,EList)
S3method(avearrays,MAList)
S3method(avearrays,EList)
S3method(cbind,MAList)
S3method(cbind,RGList)
S3method(cbind,EList)
S3method(cbind,EListRaw)
S3method(dim,MAList)
S3method(dim,MArrayLM)
S3method(dim,RGList)
S3method(dim,EList)
S3method(dim,EListRaw)
S3method(dimnames,MAList)
S3method(dimnames,MArrayLM)
S3method(dimnames,RGList)
S3method(dimnames,EList)
S3method(dimnames,EListRaw)
S3method("dimnames<-",MAList)
S3method("dimnames<-",RGList)
S3method("dimnames<-",EList)
S3method("dimnames<-",EListRaw)
S3method(fitted,MArrayLM)
S3method(length,MAList)
S3method(length,MArrayLM)
S3method(length,RGList)
S3method(length,EList)
S3method(length,EListRaw)
S3method(merge,MAList)
S3method(merge,RGList)
S3method(rbind,MAList)
S3method(rbind,RGList)
S3method(rbind,EList)
S3method(rbind,EListRaw)
S3method(residuals,MArrayLM)
S3method(summary,MAList)
S3method(summary,MArrayLM)
S3method(summary,RGList)
S3method(summary,EList)
S3method(summary,EListRaw)
S3method(summary,TestResults)
S3method(normalizeVSN,RGList)
S3method(normalizeVSN,EListRaw)
S3method(plotMDS,MDS)
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