This file is indexed.

/etc/R/Makeconf is in r-base-core 2.14.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
# etc/Makeconf.  Generated from Makeconf.in by configure.
#
# ${R_HOME}/etc/Makeconf
#
# R was configured using the following call
# (not including env. vars and site configuration)
# configure  '--prefix=/usr' '--with-cairo' '--with-jpeglib' '--with-readline' '--with-tcltk' '--with-system-bzlib' '--with-system-pcre' '--with-system-zlib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share/R/share' '--includedir=/usr/share/R/include' '--with-blas' '--with-lapack' '--enable-R-profiling' '--enable-R-shlib' '--enable-memory-profiling' '--without-recommended-packages' '--build' 'x86_64-linux-gnu' 'build_alias=x86_64-linux-gnu' 'R_PRINTCMD=/usr/bin/lpr' 'R_PAPERSIZE=letter' 'R_BROWSER=xdg-open' 'LIBnn=lib' 'CC=gcc -std=gnu99' 'CFLAGS=-O3 -pipe  -g' 'LDFLAGS=' 'CPPFLAGS=' 'F77=gfortran' 'FFLAGS=-O3 -pipe  -g' 'CXX=g++' 'CXXFLAGS=-O3 -pipe  -g' 'FC=gfortran' 'FCFLAGS=-O3 -pipe  -g'

## This fails if it contains spaces, or if it is quoted
include $(R_SHARE_DIR)/make/vars.mk

AR = ar
## Used by packages 'maps' and 'mapdata'
AWK = /usr/bin/awk
BLAS_LIBS = -lblas
C_VISIBILITY = -fvisibility=hidden
CC = gcc -std=gnu99
CFLAGS = -O3 -pipe  -g
CPICFLAGS = -fpic
CPPFLAGS = 
CXX = g++
CXXCPP = g++ -E
CXXFLAGS = -O3 -pipe  -g
CXXPICFLAGS = -fpic
DYLIB_EXT = .so
DYLIB_LD = gcc -std=gnu99
DYLIB_LDFLAGS = -shared -fopenmp
DYLIB_LINK = $(DYLIB_LD) $(DYLIB_LDFLAGS) $(LDFLAGS)
ECHO = echo
ECHO_C = 
ECHO_N = -n
ECHO_T = 
## NB, set FC before F77 as on Solaris make, setting FC sets F77
FC = gfortran
FCFLAGS = -O3 -pipe  -g
## additional libs needed when linking with $(FC), e.g. on Solaris
FCLIBS = 
F77 = gfortran
F77_VISIBILITY = -fvisibility=hidden
FFLAGS = -O3 -pipe  -g
FLIBS =  -lgfortran -lm -lquadmath
FCPICFLAGS = -fpic
FPICFLAGS = -fpic
FOUNDATION_CPPFLAGS = 
FOUNDATION_LIBS = 
JAR = /usr/bin/jar
JAVA = /usr/bin/java
JAVAC = /usr/bin/javac
JAVAH = /usr/bin/javah
JAVA_HOME = /usr/lib/jvm/java-6-openjdk-amd64/jre
JAVA_LD_LIBRARY_PATH = $(JAVA_HOME)/lib/amd64/server:$(JAVA_HOME)/lib/amd64:$(JAVA_HOME)/../lib/amd64:/usr/java/packages/lib/amd64:/usr/lib/x86_64-linux-gnu/jni:/lib/x86_64-linux-gnu:/usr/lib/x86_64-linux-gnu:/usr/lib/jni:/lib:/usr/lib
JAVA_LIBS = -L$(JAVA_HOME)/lib/amd64/server -L$(JAVA_HOME)/lib/amd64 -L$(JAVA_HOME)/../lib/amd64 -L/usr/java/packages/lib/amd64 -L/usr/lib/x86_64-linux-gnu/jni -L/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -L/usr/lib/jni -L/lib -L/usr/lib -ljvm
JAVA_CPPFLAGS = -I$(JAVA_HOME)/../include
LAPACK_LIBS = -llapack
## we only need this is if it is external, as otherwise link to R
LIBINTL= 
LIBM = -lm
LIBR = -L$(R_HOME)/lib$(R_ARCH) -lR
LIBS =  -lpcre -llzma -lbz2 -lz -lrt -ldl -lm
## needed by R CMD config
LIBnn = lib
LIBTOOL = $(SHELL) "$(R_HOME)/bin/libtool"
LDFLAGS = 
## needed to build applications linking to static libR
MAIN_LD = gcc -std=gnu99
MAIN_LDFLAGS = -Wl,--export-dynamic -fopenmp
MAIN_LINK = $(MAIN_LD) $(MAIN_LDFLAGS) $(LDFLAGS)
MKINSTALLDIRS = $(R_HOME)/bin/mkinstalldirs
OBJC = 
OBJCFLAGS = 
OBJC_LIBS = 
OBJCXX = 
R_ARCH = 
RANLIB = ranlib
SAFE_FFLAGS = -O3 -pipe  -g -ffloat-store
SED = /bin/sed
SHELL = /bin/bash
SHLIB_CFLAGS = 
SHLIB_CXXFLAGS = 
SHLIB_CXXLD = g++
SHLIB_CXXLDFLAGS = -shared
SHLIB_EXT = .so
SHLIB_FCLD = gfortran
SHLIB_FCLDFLAGS = -shared
SHLIB_FFLAGS = 
SHLIB_LD = gcc -std=gnu99
SHLIB_LDFLAGS = -shared
SHLIB_LIBADD = 
SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS)
SHLIB_OPENMP_CFLAGS = -fopenmp
SHLIB_OPENMP_CXXFLAGS = -fopenmp
SHLIB_OPENMP_FCFLAGS = -fopenmp
SHLIB_OPENMP_FFLAGS = -fopenmp
STRIP_LIBS = strip --strip-unneeded
STRIP_STATIC_LIBS = strip --strip-debug
TCLTK_CPPFLAGS = -I/usr/include/tcl8.5 -I/usr/include/tcl8.5 
TCLTK_LIBS = -L/usr/lib -ltcl8.5 -L/usr/lib -ltk8.5 -lX11 -lXss -lXext

## for linking to libR.a
STATIC_LIBR = # "$(R_HOME)/lib$(R_ARCH)/libR.a" $(BLAS_LIBS) $(FLIBS)  $(LIBINTL) -lreadline  $(LIBS)


R_XTRA_CFLAGS = 
R_XTRA_CPPFLAGS =  -I$(R_INCLUDE_DIR)
R_XTRA_CXXFLAGS = 
R_XTRA_FFLAGS = 

ALL_CFLAGS = $(R_XTRA_CFLAGS) $(PKG_CFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(CFLAGS)
ALL_CPPFLAGS = $(R_XTRA_CPPFLAGS) $(PKG_CPPFLAGS) $(CPPFLAGS) $(CLINK_CPPFLAGS)
ALL_CXXFLAGS = $(R_XTRA_CXXFLAGS) $(PKG_CXXFLAGS) $(CXXPICFLAGS) $(SHLIB_CXXFLAGS) $(CXXFLAGS)
ALL_OBJCFLAGS = $(PKG_OBJCFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(OBJCFLAGS)
ALL_OBJCXXFLAGS = $(PKG_OBJCXXFLAGS) $(CXXPICFLAGS) $(SHLIB_CXXFLAGS) $(OBJCXXFLAGS)
ALL_FFLAGS = $(R_XTRA_FFLAGS) $(PKG_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(FFLAGS)
ALL_LIBS = $(PKG_LIBS) $(SHLIB_LIBADD) $(LIBR)# $(LIBINTL)

.SUFFIXES:
.SUFFIXES: .c .cc .cpp .d .f .f90 .f95 .m .mm .M .o

.c.o:
	$(CC) $(ALL_CPPFLAGS) $(ALL_CFLAGS) -c $< -o $@
.c.d:
	@echo "making $@ from $<"
	@gcc -std=gnu99 -MM $(ALL_CPPFLAGS) $< > $@
.m.d:
	@echo > $@
.cc.o:
	$(CXX) $(ALL_CPPFLAGS) $(ALL_CXXFLAGS) -c $< -o $@
.cpp.o:
	$(CXX) $(ALL_CPPFLAGS) $(ALL_CXXFLAGS) -c $< -o $@
.cc.d:
	@echo "making $@ from $<"
	@$(CXX) -M $(ALL_CPPFLAGS) $< > $@
.cpp.d:
	@echo "making $@ from $<"
	@$(CXX) -M $(ALL_CPPFLAGS) $< > $@
.m.o:
	$(OBJC) $(ALL_CPPFLAGS) $(ALL_OBJCFLAGS) -c $< -o $@
.mm.o:
	$(OBJCXX) $(ALL_CPPFLAGS) $(ALL_OBJCXXFLAGS) -c $< -o $@
.M.o:
	$(OBJCXX) $(ALL_CPPFLAGS) $(ALL_OBJCXXFLAGS) -c $< -o $@
.f.o:
	$(F77) $(ALL_FFLAGS) -c $< -o $@
.f95.o:
	$(FC) $(PKG_FCFLAGS) $(FCPICFLAGS) $(FCFLAGS) -c  $< -o $@
.f90.o:
	$(FC) $(PKG_FCFLAGS) $(FCPICFLAGS) $(FCFLAGS) -c  $< -o $@