/usr/include/ncbi/salpanel.h is in libvibrant6-dev 6.1.20110713-3ubuntu2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 | /* salpanel.h
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information (NCBI)
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government do not place any restriction on its use or reproduction.
* We would, however, appreciate having the NCBI and the author cited in
* any work or product based on this material
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* ===========================================================================
*
* File Name: salpanel.h
*
* Author: Colombe Chappey
*
* Version Creation Date: 1/27/96
*
* $Revision: 6.17 $
*
* File Description:
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* ------- ---------- -----------------------------------------------------
*
*
* ==========================================================================
*/
#ifndef _SALPANEL_
#define _SALPANEL_
#include <salsa.h>
#include <seqport.h>
#include <vibrant.h>
#include <txalign.h>
#include <explore.h>
#include <dlogutil.h>
#include <cdrgn.h>
extern WindoW getwindow_frompanel (PaneL pnl);
extern PaneL GetPanelFromWindow (WindoW w);
extern EditAlignDataPtr GetAlignEditData (WindoW w);
extern EditAlignDataPtr GetAlignDataPanel (PaneL pnl);
/********************************************************
***
*** SetupScrollBar
*** CorrectBarMax_v: nr of sequences NOT shown
*** CorrectBarMax_h: length of alignment NOT shown
*** CorrectBarPage_v: v_Page - 1
*** CorrectBarPage_h: visibleWidth - 1
***
*********************************************************/
extern BaR SeqEdGetSlateScrollBar (PaneL pnl);
extern Int4 SeqEdGetValueScrollBar (PaneL pnl);
extern void SeqEdSetValueScrollBar (PaneL pnl, Int4 value);
extern void SeqEdCorrectBarPage (PaneL pnl, Int4 page1, Int4 page2);
extern void SeqEdCorrectBarValue (PaneL pnl, Int4 value);
extern void SeqEdCorrectBarMax (PaneL pnl, Int4 value);
extern void SeqEdSetCorrectBarMax (PaneL pnl, EditAlignDataPtr adp, float hratio);
extern void VscrlProc (BaR sb, SlatE s, Int4 newval, Int4 oldval);
extern void HscrlProc (BaR sb, SlatE s, Int4 newval, Int4 oldval);
extern Int4 hoffset2voffset (EditAlignDataPtr adp, ValNodePtr anp_list, Int4 line_len, Int4 left, Int4 right, Int4 hoffset);
/************************************************************
*** ResizeAlignDataWindow: Call Back for DocumentWindow
*************************************************************/
extern void do_resize_panel (PaneL pnl, EditAlignDataPtr adp, Int4 width, Int4 height, Boolean rearrange);
extern void do_resize_window (PaneL pnl, EditAlignDataPtr adp, Boolean rearrange);
/*****************************************************************
***
*** Draw Alignment in Panel p
***
******************************************************************/
extern void on_draw (PaneL p);
extern SeqFeatPtr
GetNextFeatureOnSegOrMaster
(BioseqPtr bsp,
SeqFeatPtr sfp,
Uint4 itemID,
Uint4 index,
SeqMgrFeatContextPtr fcontext);
extern void DoFixCDS (SeqFeatPtr sfp, Pointer userdata);
#ifdef WIN_MAC
extern void UpdateSequenceFormActivate (WindoW w);
extern void UpdateSequenceFormActivated (WindoW w);
#define SEQFORM_INIT_ACTIVE "SeqFormInitActive"
#define SEQFORM_OPEN_ITEM "SeqFormOpenItem"
#define SEQFORM_CLOSE_ITEM "SeqFormCloseItem"
#endif
extern ForM
FeaturePropagateForm
(BioseqPtr bsp,
SeqAlignPtr salp,
Uint4 selFeatItemID);
#define ADD_TITLE 1
#define ADD_RRNA 2
#define ADD_CDS 3
#define ADD_IMP 4
#define ADD_GENE 5
#define CHECK_TITLE 6
typedef struct batchapplyfeaturedetails
{
CharPtr defline;
CharPtr geneName;
CharPtr geneDesc;
CharPtr protName;
CharPtr protDesc;
CharPtr rnaName;
RnaTypePtr rnaType;
CharPtr featcomment;
Int4 featdef_choice;
CharPtr featdef_name;
Int4 reading_frame;
} BatchApplyFeatureDetailsData, PNTR BatchApplyFeatureDetailsPtr;
extern BatchApplyFeatureDetailsPtr
BatchApplyFeatureDetailsFree
(BatchApplyFeatureDetailsPtr bafdp);
extern BatchApplyFeatureDetailsPtr BatchApplyFeatureDetailsNew (void);
typedef int (LIBCALLBACK *CompareFunc) (Nlm_VoidPtr, Nlm_VoidPtr);
extern int LIBCALLBACK CompareImpFeatEnumFieldAssoc (VoidPtr ptr1, VoidPtr ptr2);
extern int LIBCALLBACK CompareFeatureValNodeStrings (VoidPtr ptr1, VoidPtr ptr2);
extern void SortEnumFieldAssocPtrArray (EnumFieldAssocPtr alist, CompareFunc compar);
extern DialoG
BatchApplyFeatureDetailsDialog (GrouP parent, Int4 feattype, Nlm_ChangeNotifyProc change_notify, Pointer change_userdata);
extern Boolean OkToAcceptBatchApplyFeatureDetails (DialoG d);
extern Boolean AlreadyHasRNA (SeqEntryPtr sep, RnaTypePtr rtp);
extern void
ApplyFeatureToAlignment
(Uint2 entityID,
SeqAlignPtr salp,
SeqLocPtr slp,
Int4 feattype);
extern SeqAnnotPtr GetSeqAnnotForAlignment (SeqAlignPtr sap);
extern void ConvertPairwiseToMultipleAlignment (SeqAlignPtr sap);
extern void
PropagateOneFeat
(SeqFeatPtr sfp,
Boolean gapSplit,
Boolean fuse_joints,
Boolean stopCDS,
Boolean transPast,
Boolean cds3end,
ValNodePtr seq_for_prop, /* ValNode data.ptrvalue points to SeqId */
BoolPtr warned_about_master);
#endif
|