/usr/include/trilinos/Tpetra_CrsGraph_def.hpp is in libtrilinos-dev 10.4.0.dfsg-1ubuntu2.
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| //@HEADER
// ************************************************************************
//
// Tpetra: Templated Linear Algebra Services Package
// Copyright (2008) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
// USA
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ************************************************************************
//@HEADER
#ifndef TPETRA_CRSGRAPH_DEF_HPP
#define TPETRA_CRSGRAPH_DEF_HPP
// TODO: filter column indices first in insertLocalIndices()
// TODO: filter column indices first in insertGlobalIndices()
#include <Kokkos_NodeTrace.hpp>
#ifdef DOXYGEN_USE_ONLY
#include "Tpetra_CrsGraph_decl.hpp"
#endif
namespace Tpetra {
template <class LocalOrdinal, class GlobalOrdinal, class Node>
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::CrsGraph(const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &rowMap, size_t maxNumEntriesPerRow, ProfileType pftype)
: DistObject<GlobalOrdinal,LocalOrdinal,GlobalOrdinal,Node>(rowMap)
, rowMap_(rowMap)
, lclGraph_(rowMap->getNodeNumElements(), rowMap->getNode())
, nodeNumEntries_(0)
, nodeNumDiags_(0)
, nodeMaxNumRowEntries_(0)
, nodeNumAllocated_(Teuchos::OrdinalTraits<size_t>::invalid())
, pftype_(pftype)
, numAllocForAllRows_(maxNumEntriesPerRow)
, indicesAreAllocated_(false)
, indicesAreLocal_(false)
, indicesAreGlobal_(false)
, fillComplete_(false)
, storageOptimized_(false)
, lowerTriangular_(false)
, upperTriangular_(false)
, indicesAreSorted_(false)
, noRedundancies_(false) {
staticAssertions();
TEST_FOR_EXCEPTION(maxNumEntriesPerRow > Teuchos::OrdinalTraits<size_t>::max() || (maxNumEntriesPerRow < 1 && maxNumEntriesPerRow != 0), std::runtime_error,
Teuchos::typeName(*this) << "::CrsGraph(rowMap,maxNumEntriesPerRow): maxNumEntriesPerRow must be non-negative.");
clearGlobalConstants();
checkInternalState();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::CrsGraph(const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &rowMap,
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &colMap,
size_t maxNumEntriesPerRow, ProfileType pftype)
: DistObject<GlobalOrdinal,LocalOrdinal,GlobalOrdinal,Node>(rowMap)
, rowMap_(rowMap)
, colMap_(colMap)
, lclGraph_(rowMap->getNodeNumElements(), rowMap->getNode())
, nodeNumEntries_(0)
, nodeNumDiags_(0)
, nodeMaxNumRowEntries_(0)
, nodeNumAllocated_(Teuchos::OrdinalTraits<size_t>::invalid())
, pftype_(pftype)
, numAllocForAllRows_(maxNumEntriesPerRow)
, indicesAreAllocated_(false)
, indicesAreLocal_(false)
, indicesAreGlobal_(false)
, fillComplete_(false)
, storageOptimized_(false)
, lowerTriangular_(false)
, upperTriangular_(false)
, indicesAreSorted_(false)
, noRedundancies_(false) {
staticAssertions();
TEST_FOR_EXCEPTION(maxNumEntriesPerRow > Teuchos::OrdinalTraits<size_t>::max() || (maxNumEntriesPerRow < 1 && maxNumEntriesPerRow != 0), std::runtime_error,
Teuchos::typeName(*this) << "::CrsGraph(rowMap,colMap,maxNumEntriesPerRow): maxNumEntriesPerRow must be non-negative.");
clearGlobalConstants();
checkInternalState();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::CrsGraph(const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &rowMap,
const Teuchos::ArrayRCP<const size_t> &NumEntriesPerRowToAlloc, ProfileType pftype)
: DistObject<GlobalOrdinal,LocalOrdinal,GlobalOrdinal,Node>(rowMap)
, rowMap_(rowMap)
, lclGraph_(rowMap->getNodeNumElements(), rowMap->getNode())
, nodeNumEntries_(0)
, nodeNumDiags_(0)
, nodeMaxNumRowEntries_(0)
, nodeNumAllocated_(Teuchos::OrdinalTraits<size_t>::invalid())
, pftype_(pftype)
, numAllocPerRow_(NumEntriesPerRowToAlloc)
, numAllocForAllRows_(0)
, indicesAreAllocated_(false)
, indicesAreLocal_(false)
, indicesAreGlobal_(false)
, fillComplete_(false)
, storageOptimized_(false)
, lowerTriangular_(false)
, upperTriangular_(false)
, indicesAreSorted_(false)
, noRedundancies_(false) {
staticAssertions();
TEST_FOR_EXCEPTION((size_t)NumEntriesPerRowToAlloc.size() != getNodeNumRows(), std::runtime_error,
Teuchos::typeName(*this) << "::CrsGraph(rowMap,NumEntriesPerRowToAlloc): NumEntriesPerRowToAlloc must have as many entries as specified by rowMap for this node.");
size_t numMin = Teuchos::OrdinalTraits<size_t>::max(),
numMax = Teuchos::OrdinalTraits<size_t>::zero();
for (size_t r=0; r < getNodeNumRows(); ++r) {
numMin = std::min<size_t>( numMin, NumEntriesPerRowToAlloc[r] );
numMax = std::max<size_t>( numMax, NumEntriesPerRowToAlloc[r] );
}
TEST_FOR_EXCEPTION((numMin < Teuchos::OrdinalTraits<size_t>::one() && numMin != Teuchos::OrdinalTraits<size_t>::zero()) || numMax > Teuchos::OrdinalTraits<size_t>::max(),
std::runtime_error, Teuchos::typeName(*this) << "::CrsGraph(): Invalid user-specified number of non-zeros per row.");
clearGlobalConstants();
checkInternalState();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::CrsGraph(const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &rowMap, const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &colMap, const Teuchos::ArrayRCP<const size_t> &NumEntriesPerRowToAlloc, ProfileType pftype)
: DistObject<GlobalOrdinal,LocalOrdinal,GlobalOrdinal,Node>(rowMap)
, rowMap_(rowMap)
, colMap_(colMap)
, lclGraph_(rowMap->getNodeNumElements(), rowMap->getNode())
, nodeNumEntries_(0)
, nodeNumDiags_(0)
, nodeMaxNumRowEntries_(0)
, nodeNumAllocated_(Teuchos::OrdinalTraits<size_t>::invalid())
, pftype_(pftype)
, numAllocPerRow_(NumEntriesPerRowToAlloc)
, numAllocForAllRows_(0)
, indicesAreAllocated_(false)
, indicesAreLocal_(false)
, indicesAreGlobal_(false)
, fillComplete_(false)
, storageOptimized_(false)
, lowerTriangular_(false)
, upperTriangular_(false)
, indicesAreSorted_(false)
, noRedundancies_(false) {
staticAssertions();
TEST_FOR_EXCEPTION((size_t)NumEntriesPerRowToAlloc.size() != getNodeNumRows(), std::runtime_error,
Teuchos::typeName(*this) << "::CrsGraph(rowMap,colMap,NumEntriesPerRowToAlloc): NumEntriesPerRowToAlloc must have as many entries as specified by rowMap for this node.");
clearGlobalConstants();
checkInternalState();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::allocateIndices(AllocateLocalGlobal lorg) {
using Teuchos::null;
// this is a protected function, only callable by us. if it was called incorrectly, it is our fault.
TEST_FOR_EXCEPTION(isLocallyIndexed() && lorg==AllocateGlobal, std::logic_error,
Teuchos::typeName(*this) << "::allocateIndices(): Internal logic error. Please contact Tpetra team.");
TEST_FOR_EXCEPTION(isGloballyIndexed() && lorg==AllocateLocal, std::logic_error,
Teuchos::typeName(*this) << "::allocateIndices(): Internal logic error. Please contact Tpetra team.");
TEST_FOR_EXCEPTION( indicesAreAllocated() == true, std::logic_error,
Teuchos::typeName(*this) << "::allocateIndices(): Internal logic error. Please contact Tpetra team.");
Teuchos::RCP<Node> node = lclGraph_.getNode();
const size_t numRows = getNodeNumRows();
indicesAreLocal_ = (lorg == AllocateLocal);
indicesAreGlobal_ = (lorg == AllocateGlobal);
// if we have no row, then we have nothing to do
nodeNumAllocated_ = 0;
if (numRows > 0) {
if (getProfileType() == StaticProfile) {
//
// STATIC ALLOCATION PROFILE
//
// determine how many entries to allocate and setup offsets into 1D arrays
pbuf_rowOffsets_ = node->template allocBuffer<size_t>(numRows+1);
KOKKOS_NODE_TRACE("CrsGraph::allocateIndices()")
view_rowOffsets_ = node->template viewBufferNonConst<size_t>(Kokkos::WriteOnly,numRows+1,pbuf_rowOffsets_);
if (numAllocPerRow_ != null) {
// allocate offsets, get host view
nodeNumAllocated_ = 0;
for (size_t i=0; i < numRows; ++i) {
view_rowOffsets_[i] = nodeNumAllocated_;
nodeNumAllocated_ += numAllocPerRow_[i];
}
view_rowOffsets_[numRows] = nodeNumAllocated_;
}
else {
nodeNumAllocated_ = numAllocForAllRows_ * numRows;
view_rowOffsets_[0] = 0;
for (size_t i=1; i <= numRows; ++i) {
view_rowOffsets_[i] = view_rowOffsets_[i-1] + numAllocForAllRows_;
}
}
// in hind-sight, we know nodeNumAllocated_ and whether pbuf_rowOffsets_ is needed at all
if (nodeNumAllocated_ == 0) {
view_rowOffsets_ = null;
pbuf_rowOffsets_ = null;
}
// allocate the indices
if (nodeNumAllocated_ > 0) {
if (lorg == AllocateLocal) {
pbuf_lclInds1D_ = node->template allocBuffer<LocalOrdinal>(nodeNumAllocated_);
KOKKOS_NODE_TRACE("CrsGraph::allocateIndices()")
view_lclInds1D_ = node->template viewBufferNonConst<LocalOrdinal>(Kokkos::WriteOnly, pbuf_lclInds1D_.size(), pbuf_lclInds1D_);
}
else {
pbuf_gblInds1D_ = node->template allocBuffer<GlobalOrdinal>(nodeNumAllocated_);
KOKKOS_NODE_TRACE("CrsGraph::allocateIndices()")
view_gblInds1D_ = node->template viewBufferNonConst<GlobalOrdinal>(Kokkos::WriteOnly, pbuf_gblInds1D_.size(), pbuf_gblInds1D_);
}
}
}
else {
//
// DYNAMIC ALLOCATION PROFILE
//
Teuchos::ArrayRCP<const size_t> numalloc = numAllocPerRow_;
size_t howmany = numAllocForAllRows_;
if (lorg == AllocateLocal) {
pbuf_lclInds2D_ = Teuchos::arcp< Teuchos::ArrayRCP<LocalOrdinal> >(numRows);
nodeNumAllocated_ = 0;
for (size_t i=0; i < numRows; ++i) {
if (numalloc != null) howmany = *numalloc++;
nodeNumAllocated_ += howmany;
if (howmany > 0) pbuf_lclInds2D_[i] = node->template allocBuffer<LocalOrdinal>(howmany);
}
if (nodeNumAllocated_ > 0) {
view_lclInds2D_ = Kokkos::ArrayOfViewsHelper<Node>::template getArrayOfNonConstViews<LocalOrdinal>(node, Kokkos::WriteOnly, pbuf_lclInds2D_);
}
else {
pbuf_lclInds2D_ = null;
}
}
else { // allocate global indices
pbuf_gblInds2D_ = Teuchos::arcp< Teuchos::ArrayRCP<GlobalOrdinal> >(numRows);
nodeNumAllocated_ = 0;
for (size_t i=0; i < numRows; ++i) {
if (numalloc != null) howmany = *numalloc++;
nodeNumAllocated_ += howmany;
if (howmany > 0) pbuf_gblInds2D_[i] = node->template allocBuffer<GlobalOrdinal>(howmany);
}
if (nodeNumAllocated_ > 0) {
view_gblInds2D_ = Kokkos::ArrayOfViewsHelper<Node>::template getArrayOfNonConstViews<GlobalOrdinal>(node, Kokkos::WriteOnly, pbuf_gblInds2D_);
}
else {
pbuf_gblInds2D_ = null;
}
}
}
//
//
//
if (nodeNumAllocated_ > 0) {
numEntriesPerRow_ = Teuchos::arcp<size_t>(numRows);
std::fill(numEntriesPerRow_.begin(), numEntriesPerRow_.end(), 0);
}
} // if numRows > 0
// done with these
numAllocForAllRows_ = 0;
numAllocPerRow_ = null;
indicesAreAllocated_ = true;
checkInternalState();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::~CrsGraph()
{}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
global_size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getGlobalNumRows() const {
return rowMap_->getGlobalNumElements();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
global_size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getGlobalNumCols() const {
TEST_FOR_EXCEPTION(hasColMap() == false, std::runtime_error,
Teuchos::typeName(*this) << ": cannot call getGlobalNumCols() without column map.");
return colMap_->getGlobalNumElements();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNodeNumRows() const {
return rowMap_->getNodeNumElements();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNodeNumCols() const {
TEST_FOR_EXCEPTION(hasColMap() != true, std::runtime_error,
Teuchos::typeName(*this) << ": cannot call getNodeNumCols() without a column map.");
return colMap_->getNodeNumElements();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNodeNumDiags() const {
TEST_FOR_EXCEPTION(!isFillComplete(), std::runtime_error,
Teuchos::typeName(*this) << ": cannot call getNodeNumDiags() until fillComplete() has been called.");
return nodeNumDiags_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
global_size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getGlobalNumDiags() const {
return globalNumDiags_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
Teuchos::RCP<Node>
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNode() const {
return lclGraph_.getNode();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getRowMap() const {
return rowMap_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getColMap() const {
return colMap_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getDomainMap() const {
return domainMap_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getRangeMap() const {
return rangeMap_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
Teuchos::RCP<const Import<LocalOrdinal,GlobalOrdinal,Node> >
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getImporter() const {
return importer_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
Teuchos::RCP<const Export<LocalOrdinal,GlobalOrdinal,Node> >
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getExporter() const {
return exporter_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::hasColMap() const {
return (colMap_ != Teuchos::null);
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::isStorageOptimized() const {
return storageOptimized_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
ProfileType CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getProfileType() const {
return pftype_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
global_size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getGlobalNumEntries() const {
return globalNumEntries_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNodeNumEntries() const {
return nodeNumEntries_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
global_size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getGlobalMaxNumRowEntries() const {
return globalMaxNumRowEntries_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNodeMaxNumRowEntries() const {
return nodeMaxNumRowEntries_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::isFillComplete() const {
return fillComplete_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::isUpperTriangular() const {
return upperTriangular_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::isLowerTriangular() const {
return lowerTriangular_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::isLocallyIndexed() const {
return indicesAreLocal_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::isGloballyIndexed() const {
return indicesAreGlobal_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNodeAllocationSize() const {
return nodeNumAllocated_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
const Teuchos::RCP<const Teuchos::Comm<int> > &
CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getComm() const {
return rowMap_->getComm();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
GlobalOrdinal CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getIndexBase() const {
return rowMap_->getIndexBase();
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::isSorted() const {
return indicesAreSorted_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::notRedundant() const {
return noRedundancies_;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::setSorted(bool sorted) {
indicesAreSorted_ = sorted;
}
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::indicesAreAllocated() const {
return indicesAreAllocated_;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
// //
// Internal utility methods //
// //
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
RowInfo CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getRowInfo(size_t myRow) const {
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(myRow) == false, std::logic_error,
Teuchos::typeName(*this) << "::getRowInfo(): Internal logic error. Please contact Tpetra team.");
#endif
const size_t STINV = Teuchos::OrdinalTraits<size_t>::invalid();
RowInfo ret;
if (indicesAreAllocated() == false) {
// haven't performed allocation yet; probably won't hit this code
if (numAllocPerRow_ == Teuchos::null) {
ret.allocSize = numAllocForAllRows_;
}
else {
ret.allocSize = numAllocPerRow_[myRow];
}
ret.numEntries = 0;
ret.offset1D = STINV;
}
else if (nodeNumAllocated_ == 0) {
// have performed allocation, but the graph has no allocation or entries
ret.allocSize = 0;
ret.numEntries = 0;
ret.offset1D = STINV;
}
else {
// graph data structures have the info that we need
//
// if static graph, offsets tell us the allocation size
if (getProfileType() == StaticProfile) {
Teuchos::RCP<Node> node = lclGraph_.getNode();
if (view_rowOffsets_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::getRowInfo()")
Teuchos::ArrayRCP<const size_t> offs = node->template viewBuffer<size_t>(2,pbuf_rowOffsets_+myRow);
ret.offset1D = offs[0];
ret.allocSize = offs[1] - ret.offset1D;
offs = Teuchos::null;
}
else {
ret.offset1D = view_rowOffsets_[myRow];
ret.allocSize = view_rowOffsets_[myRow+1] - ret.offset1D;
}
}
else {
if (isLocallyIndexed()) {
ret.allocSize = pbuf_lclInds2D_[myRow].size();
}
else {
ret.allocSize = pbuf_gblInds2D_[myRow].size();
}
ret.offset1D = STINV;
}
//
// if storage is optimized, then allocSize == numnz
if (isStorageOptimized()) {
ret.numEntries = ret.allocSize;
}
else {
ret.numEntries = numEntriesPerRow_[myRow];
}
}
return ret;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
RowInfo CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getFullLocalView(
size_t myRow,
Teuchos::ArrayRCP<const LocalOrdinal> &indices) const {
#ifdef HAVE_TPETRA_DEBUG
std::string err = Teuchos::typeName(*this) + "::getFullLocalView(): Internal logic error. Please contact Tpetra team.";
TEST_FOR_EXCEPTION(isGloballyIndexed() == true, std::logic_error, err);
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(myRow) == false, std::logic_error, err);
#endif
RowInfo sizeInfo = getRowInfo(myRow);
indices = Teuchos::null;
// getRowInfo does not specify whether node is allocated or not
if (sizeInfo.allocSize > 0 && indicesAreAllocated_==true) {
Teuchos::RCP<Node> node = lclGraph_.getNode();
if (getProfileType() == StaticProfile) {
if (view_lclInds1D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::getFullLocalView()")
indices = node->template viewBuffer<LocalOrdinal>(sizeInfo.allocSize, pbuf_lclInds1D_ + sizeInfo.offset1D);
}
else {
indices = view_lclInds1D_.persistingView(sizeInfo.offset1D,sizeInfo.allocSize);
}
}
else { // dynamic profile
if (view_lclInds2D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::getFullLocalView()")
indices = node->template viewBuffer<LocalOrdinal>(sizeInfo.allocSize, pbuf_lclInds2D_[myRow]);
}
else {
indices = view_lclInds2D_[myRow];
}
}
}
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(indicesAreAllocated_ == true && indices != Teuchos::null && static_cast<size_t>(indices.size()) != sizeInfo.allocSize, std::logic_error, err);
#endif
return sizeInfo;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
RowInfo CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getFullLocalViewNonConst(
size_t myRow,
Teuchos::ArrayRCP<LocalOrdinal> &indices) {
#ifdef HAVE_TPETRA_DEBUG
std::string err = Teuchos::typeName(*this) + "::getFullLocalViewNonConst(): Internal logic error. Please contact Tpetra team.";
TEST_FOR_EXCEPTION(isGloballyIndexed() == true, std::logic_error, err);
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(myRow) == false, std::logic_error, err);
#endif
RowInfo sizeInfo = getRowInfo(myRow);
indices = Teuchos::null;
// getRowInfo does not specify whether node is allocated or not
if (sizeInfo.allocSize > 0 && indicesAreAllocated_==true) {
Teuchos::RCP<Node> node = lclGraph_.getNode();
// if there are no valid entries, then this view can be constructed WriteOnly
Kokkos::ReadWriteOption rw = (sizeInfo.numEntries == 0 ? Kokkos::WriteOnly : Kokkos::ReadWrite);
if (getProfileType() == StaticProfile) {
if (view_lclInds1D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::getFullLocalViewNonConst()")
indices = node->template viewBufferNonConst<LocalOrdinal>(rw, sizeInfo.allocSize, pbuf_lclInds1D_ + sizeInfo.offset1D);
}
else {
indices = view_lclInds1D_.persistingView(sizeInfo.offset1D,sizeInfo.allocSize);
}
}
else { // dynamic profile
if (view_lclInds2D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::getFullLocalViewNonConst()")
indices = node->template viewBufferNonConst<LocalOrdinal>(rw, sizeInfo.allocSize, pbuf_lclInds2D_[myRow]);
}
else {
indices = view_lclInds2D_[myRow];
}
}
}
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(indicesAreAllocated_ == true && indices != Teuchos::null && static_cast<size_t>(indices.size()) != sizeInfo.allocSize, std::logic_error, err);
#endif
return sizeInfo;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
RowInfo CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getFullGlobalView(
size_t myRow,
Teuchos::ArrayRCP<const GlobalOrdinal> &indices) const {
#ifdef HAVE_TPETRA_DEBUG
std::string err = Teuchos::typeName(*this) + "::getFullGlobalView(): Internal logic error. Please contact Tpetra team.";
TEST_FOR_EXCEPTION(isLocallyIndexed() == true, std::logic_error, err);
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(myRow) == false, std::logic_error, err);
#endif
RowInfo sizeInfo = getRowInfo(myRow);
indices = Teuchos::null;
// getRowInfo does not specify whether node is allocated or not
if (sizeInfo.allocSize > 0 && indicesAreAllocated_==true) {
Teuchos::RCP<Node> node = lclGraph_.getNode();
// if there are no valid entries, then this view can be constructed WriteOnly
if (getProfileType() == StaticProfile) {
if (view_gblInds1D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::getFullGlobalView()")
indices = node->template viewBuffer<GlobalOrdinal>(sizeInfo.allocSize, pbuf_gblInds1D_ + sizeInfo.offset1D);
}
else {
indices = view_gblInds1D_.persistingView(sizeInfo.offset1D,sizeInfo.allocSize);
}
}
else { // dynamic profile
if (view_gblInds2D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::getFullGlobalView()")
indices = node->template viewBuffer<GlobalOrdinal>(sizeInfo.allocSize, pbuf_gblInds2D_[myRow]);
}
else {
indices = view_gblInds2D_[myRow];
}
}
}
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(indicesAreAllocated_ == true && indices != Teuchos::null && static_cast<size_t>(indices.size()) != sizeInfo.allocSize, std::logic_error, err);
#endif
return sizeInfo;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
RowInfo CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getFullGlobalViewNonConst(
size_t myRow,
Teuchos::ArrayRCP<GlobalOrdinal> &indices) {
#ifdef HAVE_TPETRA_DEBUG
std::string err = Teuchos::typeName(*this) + "::getFullGlobalViewNonConst(): Internal logic error. Please contact Tpetra team.";
TEST_FOR_EXCEPTION(isLocallyIndexed() == true, std::logic_error, err);
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(myRow) == false, std::logic_error, err);
#endif
RowInfo sizeInfo = getRowInfo(myRow);
indices = Teuchos::null;
// getRowInfo does not specify whether node is allocated or not
if (sizeInfo.allocSize > 0 && indicesAreAllocated_==true) {
Teuchos::RCP<Node> node = lclGraph_.getNode();
// if there are no valid entries, then this view can be constructed WriteOnly
Kokkos::ReadWriteOption rw = (sizeInfo.numEntries == 0 ? Kokkos::WriteOnly : Kokkos::ReadWrite);
if (getProfileType() == StaticProfile) {
if (view_gblInds1D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::getFullGlobalViewNonConst()")
indices = node->template viewBufferNonConst<GlobalOrdinal>(rw, sizeInfo.allocSize, pbuf_gblInds1D_ + sizeInfo.offset1D);
}
else {
indices = view_gblInds1D_.persistingView(sizeInfo.offset1D,sizeInfo.allocSize);
}
}
else { // dynamic profile
if (view_gblInds2D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::getFullGlobalViewNonConst()")
indices = node->template viewBufferNonConst<GlobalOrdinal>(rw, sizeInfo.allocSize, pbuf_gblInds2D_[myRow]);
}
else {
indices = view_gblInds2D_[myRow];
}
}
}
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(indicesAreAllocated_ == true && indices != Teuchos::null && static_cast<size_t>(indices.size()) != sizeInfo.allocSize, std::logic_error, err);
#endif
return sizeInfo;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::insertLocalIndicesViaView(
size_t myRow,
const Teuchos::ArrayView<const LocalOrdinal> &indices,
const Teuchos::ArrayRCP<LocalOrdinal> &inds_view) {
#ifdef HAVE_TPETRA_DEBUG
std::string err = Teuchos::typeName(*this) + "::insertLocalIndicesViaView(): Internal logic error. Please contact Tpetra team.";
TEST_FOR_EXCEPTION(isGloballyIndexed() == true, std::logic_error, err);
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(myRow) == false, std::logic_error, err);
{
RowInfo sizeInfo = getRowInfo(myRow);
TEST_FOR_EXCEPTION( sizeInfo.allocSize < sizeInfo.numEntries + indices.size(), std::logic_error, err );
}
#endif
std::copy( indices.begin(), indices.end(), inds_view.begin() );
numEntriesPerRow_[myRow] += indices.size();
nodeNumEntries_ += indices.size();
indicesAreSorted_ = false;
noRedundancies_ = false;
clearGlobalConstants();
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::insertGlobalIndicesViaView(
size_t myRow,
const Teuchos::ArrayView<const GlobalOrdinal> &indices,
const Teuchos::ArrayRCP<GlobalOrdinal> &inds_view) {
#ifdef HAVE_TPETRA_DEBUG
std::string err = Teuchos::typeName(*this) + "::insertGlobalIndicesViaView(): Internal logic error. Please contact Tpetra team.";
TEST_FOR_EXCEPTION(isLocallyIndexed() == true, std::logic_error, err);
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(myRow) == false, std::logic_error, err);
{
RowInfo sizeInfo = getRowInfo(myRow);
TEST_FOR_EXCEPTION( sizeInfo.allocSize < sizeInfo.numEntries + indices.size(), std::logic_error, err );
}
#endif
std::copy( indices.begin(), indices.end(), inds_view.begin() );
numEntriesPerRow_[myRow] += indices.size();
nodeNumEntries_ += indices.size();
indicesAreSorted_ = false;
noRedundancies_ = false;
clearGlobalConstants();
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::RNNZ(size_t row) const {
size_t rnnz;
if (isStorageOptimized()) {
// if storage is optimized, then numalloc == numnz for every row
rnnz = RNumAlloc(row);
}
else if (indicesAreAllocated() == false || nodeNumAllocated_ == 0) {
// no allocated entries means no valid entries
rnnz = 0;
}
else {
rnnz = numEntriesPerRow_[row];
}
return rnnz;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::RNumAlloc(size_t row) const {
RowInfo sizeInfo = getRowInfo(row);
return sizeInfo.allocSize;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::staticAssertions() {
using Teuchos::OrdinalTraits;
// Assumption: sizeof(GlobalOrdinal) >= sizeof(LocalOrdinal)
// This is so that we can store LocalOrdinals in the memory formerly occupied by GlobalOrdinals
// Assumption: max(GlobalOrdinal) >= max(LocalOrdinal) and max(size_t) >= max(LocalOrdinal)
// This is so that we can represent any LocalOrdinal as a size_t, and any LocalOrdinal as a GlobalOrdinal
Teuchos::CompileTimeAssert<sizeof(GlobalOrdinal) < sizeof(LocalOrdinal)> cta_size;
(void)cta_size;
// can't call max() with CompileTimeAssert, because it isn't a constant expression; will need to make this a runtime check
const char * err = ": Object cannot be allocated with stated template arguments: size assumptions are not valid.";
TEST_FOR_EXCEPTION( (size_t)OrdinalTraits<LocalOrdinal>::max() > OrdinalTraits<size_t>::max(), std::runtime_error, Teuchos::typeName(*this) << err);
TEST_FOR_EXCEPTION( OrdinalTraits<LocalOrdinal>::max() > OrdinalTraits<GlobalOrdinal>::max(), std::runtime_error, Teuchos::typeName(*this) << err);
TEST_FOR_EXCEPTION( (size_t)OrdinalTraits<GlobalOrdinal>::max() > OrdinalTraits<global_size_t>::max(), std::runtime_error, Teuchos::typeName(*this) << err);
TEST_FOR_EXCEPTION( OrdinalTraits<size_t>::max() > OrdinalTraits<global_size_t>::max(), std::runtime_error, Teuchos::typeName(*this) << err);
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::updateLocalAllocation(size_t lrow, size_t allocSize) {
using Teuchos::ArrayRCP;
Teuchos::RCP<Node> node = lclGraph_.getNode();
const size_t curNA = RNumAlloc(lrow),
rnnz = RNNZ(lrow);
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPT( rowMap_->isNodeLocalElement(lrow) == false );
TEST_FOR_EXCEPT( allocSize < curNA );
TEST_FOR_EXCEPT( isGloballyIndexed() );
TEST_FOR_EXCEPT( allocSize == 0 );
TEST_FOR_EXCEPT( indicesAreAllocated() == false );
#endif
// allocate a larger space for row "lrow"
// copy any existing data from previous allocation to new allocation
// update sizes
//
// if we already have views of the data, we will create a new view and do the copy on the host
// otherwise, don't create a view, and do the copy on the device
//
if (pbuf_lclInds2D_ == Teuchos::null) {
pbuf_lclInds2D_ = Teuchos::arcp< ArrayRCP<LocalOrdinal> >(getNodeNumRows());
// if this is our initial allocation (pbuf_lclInds2D_ == null)
// then go ahead and create views; this is our one chance to do it efficiently (i.e., WriteOnly)
view_lclInds2D_ = Kokkos::ArrayOfViewsHelper<Node>::template getArrayOfNonConstViews<LocalOrdinal>(node, Kokkos::WriteOnly, pbuf_lclInds2D_);
}
ArrayRCP<LocalOrdinal> old_alloc;
old_alloc = pbuf_lclInds2D_[lrow];
pbuf_lclInds2D_[lrow] = node->template allocBuffer<LocalOrdinal>(allocSize);
if (view_lclInds2D_ == Teuchos::null) {
// no views
if (rnnz) {
KOKKOS_NODE_TRACE("CrsGraph::updateLocalAllocation()")
node->template copyBuffers<LocalOrdinal>(rnnz, old_alloc, pbuf_lclInds2D_[lrow]);
}
old_alloc = Teuchos::null;
}
else {
// delete the buffer early, this will prevent a copy back that we neither need nor want to pay for
old_alloc = Teuchos::null;
// use views
ArrayRCP<LocalOrdinal> old_view;
old_view = view_lclInds2D_[lrow];
KOKKOS_NODE_TRACE("CrsGraph::updateLocalAllocation()")
view_lclInds2D_[lrow] = node->template viewBufferNonConst<LocalOrdinal>(Kokkos::WriteOnly, allocSize, pbuf_lclInds2D_[lrow]);
std::copy( old_view.begin(), old_view.begin() + rnnz, view_lclInds2D_[lrow].begin() );
old_view = Teuchos::null;
}
nodeNumAllocated_ += (allocSize - curNA);
if (numEntriesPerRow_ == Teuchos::null) {
numEntriesPerRow_ = Teuchos::arcp<size_t>( getNodeNumRows() );
std::fill(numEntriesPerRow_.begin(), numEntriesPerRow_.end(), 0);
}
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::updateGlobalAllocation(size_t lrow, size_t allocSize) {
using Teuchos::ArrayRCP;
Teuchos::RCP<Node> node = lclGraph_.getNode();
const size_t curNA = RNumAlloc(lrow),
rnnz = RNNZ(lrow);
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPT( rowMap_->isNodeLocalElement(lrow) == false );
TEST_FOR_EXCEPT( allocSize < curNA );
TEST_FOR_EXCEPT( isLocallyIndexed() );
TEST_FOR_EXCEPT( allocSize == 0 );
TEST_FOR_EXCEPT( indicesAreAllocated() == false );
#endif
// allocate a larger space for row "lrow"
// copy any existing data from previous allocation to new allocation
// update sizes
//
// if we already have views of the data, we will create a new view and do the copy on the host
// otherwise, don't create a view, and do the copy on the device
//
if (pbuf_gblInds2D_ == Teuchos::null) {
pbuf_gblInds2D_ = Teuchos::arcp< ArrayRCP<GlobalOrdinal> >(getNodeNumRows());
// if this is our initial allocation (pbuf_gblInds2D_ == null).
// go ahead and create views; this is our one chance to do it efficiently (i.e., WriteOnly)
view_gblInds2D_ = Kokkos::ArrayOfViewsHelper<Node>::template getArrayOfNonConstViews<GlobalOrdinal>(node, Kokkos::WriteOnly, pbuf_gblInds2D_);
}
ArrayRCP<GlobalOrdinal> old_alloc;
old_alloc = pbuf_gblInds2D_[lrow];
pbuf_gblInds2D_[lrow] = node->template allocBuffer<GlobalOrdinal>(allocSize);
if (view_gblInds2D_ == Teuchos::null) {
// no views
if (rnnz) {
KOKKOS_NODE_TRACE("CrsGraph::updateGlobalAllocation()")
node->template copyBuffers<GlobalOrdinal>(rnnz, old_alloc, pbuf_gblInds2D_[lrow]);
}
old_alloc = Teuchos::null;
}
else {
// delete the buffer early, this will prevent a copy back that we neither need nor want to pay for
old_alloc = Teuchos::null;
// use views
ArrayRCP<GlobalOrdinal> old_view;
old_view = view_gblInds2D_[lrow];
KOKKOS_NODE_TRACE("CrsGraph::updateGlobalAllocation()")
view_gblInds2D_[lrow] = node->template viewBufferNonConst<GlobalOrdinal>(Kokkos::WriteOnly, allocSize, pbuf_gblInds2D_[lrow]);
std::copy( old_view.begin(), old_view.begin() + rnnz, view_gblInds2D_[lrow].begin() );
old_view = Teuchos::null;
}
nodeNumAllocated_ += (allocSize - curNA);
if (numEntriesPerRow_ == Teuchos::null) {
numEntriesPerRow_ = Teuchos::arcp<size_t>( getNodeNumRows() );
std::fill(numEntriesPerRow_.begin(), numEntriesPerRow_.end(), 0);
}
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::findLocalIndex(
size_t row,
LocalOrdinal ind,
const Teuchos::ArrayRCP<const LocalOrdinal> &alreadyHaveAView) const {
typedef typename Teuchos::ArrayRCP<const LocalOrdinal>::iterator IT;
bool found = true;
const size_t nE = RNNZ(row);
// get a view of the row, if it wasn't passed by the caller
Teuchos::ArrayRCP<const LocalOrdinal> rowview = alreadyHaveAView;
if (rowview == Teuchos::null) {
rowview = getLocalRowView(row);
}
IT rptr, locptr;
rptr = rowview.begin();
if (isSorted()) {
// binary search
std::pair<IT,IT> p = std::equal_range(rptr,rptr+nE,ind);
if (p.first == p.second) found = false;
else locptr = p.first;
}
else {
// direct search
locptr = std::find(rptr,rptr+nE,ind);
if (locptr == rptr+nE) found = false;
}
size_t ret;
if (!found) {
ret = Teuchos::OrdinalTraits<size_t>::invalid();
}
else {
ret = (locptr - rptr);
}
locptr = Teuchos::NullIteratorTraits<IT>::getNull();
rptr = Teuchos::NullIteratorTraits<IT>::getNull();
rowview = Teuchos::null;
return ret;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::findGlobalIndex(
size_t row,
GlobalOrdinal ind,
const Teuchos::ArrayRCP<const GlobalOrdinal> &alreadyHaveAView) const {
typedef typename Teuchos::ArrayRCP<const GlobalOrdinal>::iterator IT;
bool found = true;
const size_t nE = RNNZ(row);
// get a view of the row, if it wasn't passed by the caller
Teuchos::ArrayRCP<const GlobalOrdinal> rowview = alreadyHaveAView;
if (rowview == Teuchos::null) {
rowview = getGlobalRowView(row);
}
IT rptr, locptr;
rptr = rowview.begin();
if (isSorted()) {
// binary search
std::pair<IT,IT> p = std::equal_range(rptr,rptr+nE,ind);
if (p.first == p.second) found = false;
else locptr = p.first;
}
else {
// direct search
locptr = std::find(rptr,rptr+nE,ind);
if (locptr == rptr+nE) found = false;
}
size_t ret;
if (!found) {
ret = Teuchos::OrdinalTraits<size_t>::invalid();
}
else {
ret = (locptr - rptr);
}
locptr = Teuchos::NullIteratorTraits<IT>::getNull();
rptr = Teuchos::NullIteratorTraits<IT>::getNull();
rowview = Teuchos::null;
return ret;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::clearGlobalConstants() {
globalNumEntries_ = Teuchos::OrdinalTraits<global_size_t>::invalid();
globalNumDiags_ = Teuchos::OrdinalTraits<global_size_t>::invalid();
globalMaxNumRowEntries_ = Teuchos::OrdinalTraits<global_size_t>::invalid();
haveGlobalConstants_ = false;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::checkInternalState() const {
#ifdef HAVE_TPETRA_DEBUG
Teuchos::RCP<Node> node = lclGraph_.getNode();
const global_size_t gsti = Teuchos::OrdinalTraits<global_size_t>::invalid();
const size_t sti = Teuchos::OrdinalTraits<size_t>::invalid();
using Teuchos::null;
std::string err = Teuchos::typeName(*this) + "::checkInternalState(): Likely internal logic error. Please contact Tpetra team.";
// check the internal state of this data structure
// this is called by numerous state-changing methods, in a debug build, to ensure that the object
// always remains in a valid state
// the graph should have been allocated with a row map
TEST_FOR_EXCEPTION( rowMap_ == null, std::logic_error, err );
// if the graph thinks it has a column map, then it had better have one
TEST_FOR_EXCEPTION( hasColMap() == (colMap_ == null), std::logic_error, err );
// if the graph has been fill completed, then all maps should be present
TEST_FOR_EXCEPTION( isFillComplete() == true && (colMap_ == null || rangeMap_ == null || domainMap_ == null), std::logic_error, err );
// if storage has been optimized, then indices should have been allocated (even if trivially so)
TEST_FOR_EXCEPTION( isStorageOptimized() == true && indicesAreAllocated() == false, std::logic_error, err );
// if storage has been optimized, then number of allocated is now the number of entries
TEST_FOR_EXCEPTION( isStorageOptimized() == true && nodeNumAllocated_ != nodeNumEntries_, std::logic_error, err );
// if graph doesn't have the global constants, then they should all be marked as invalid
TEST_FOR_EXCEPTION( haveGlobalConstants_ == false && ( globalNumEntries_ != gsti || globalNumDiags_ != gsti || globalMaxNumRowEntries_ != gsti ), std::logic_error, err );
// if the graph has global cosntants, then they should be valid.
TEST_FOR_EXCEPTION( haveGlobalConstants_ == true && ( globalNumEntries_ == gsti || globalNumDiags_ == gsti || globalMaxNumRowEntries_ == gsti ), std::logic_error, err );
TEST_FOR_EXCEPTION( haveGlobalConstants_ == true && ( globalNumEntries_ < nodeNumEntries_ || globalNumDiags_ < nodeNumDiags_ || globalMaxNumRowEntries_ < nodeMaxNumRowEntries_ ),
std::logic_error, err );
// no view should be present in the absence of a buffer
TEST_FOR_EXCEPTION( (pbuf_lclInds1D_ == Teuchos::null && view_lclInds1D_ != Teuchos::null) ||
(pbuf_gblInds1D_ == Teuchos::null && view_gblInds1D_ != Teuchos::null) ||
(pbuf_lclInds2D_ == Teuchos::null && view_lclInds2D_ != Teuchos::null) ||
(pbuf_gblInds2D_ == Teuchos::null && view_gblInds2D_ != Teuchos::null) ||
(pbuf_rowOffsets_ == Teuchos::null && view_rowOffsets_ != Teuchos::null), std::logic_error, err );
// if indices are allocated, then the information dictating the allocation quantities should be freed
TEST_FOR_EXCEPTION( indicesAreAllocated() == true && (numAllocForAllRows_ != 0 || numAllocPerRow_ != null), std::logic_error, err );
// if indices are not allocated, then information dictating allocation quantities should be present
TEST_FOR_EXCEPTION( indicesAreAllocated() == false && (nodeNumAllocated_ != sti || nodeNumEntries_ != 0), std::logic_error, err );
// if indices are not allocated, then views should be null
TEST_FOR_EXCEPTION( indicesAreAllocated() == false && (view_lclInds1D_ != null || view_gblInds1D_ != null || view_lclInds2D_ != null || view_gblInds2D_ != null || view_rowOffsets_ != null), std::logic_error, err );
// if storage is optimized, then profile should be static
TEST_FOR_EXCEPTION( isStorageOptimized() && pftype_ != StaticProfile, std::logic_error, err );
// if profile is dynamic and we have a non-trivial allocation, then 2D allocations should be present
TEST_FOR_EXCEPTION( pftype_ == DynamicProfile && indicesAreAllocated() && nodeNumAllocated_ > 0 && pbuf_lclInds2D_ == null && pbuf_gblInds2D_ == null, std::logic_error, err );
// if profile is dynamic, then 1D allocations should not be present
TEST_FOR_EXCEPTION( pftype_ == DynamicProfile && (pbuf_lclInds1D_ != null || pbuf_gblInds1D_ != null), std::logic_error, err );
// if profile is static and we have a non-trivial allocation, then 1D allocations should be present
TEST_FOR_EXCEPTION( pftype_ == StaticProfile && indicesAreAllocated() && nodeNumAllocated_ > 0 && pbuf_lclInds1D_ == null && pbuf_gblInds1D_ == null, std::logic_error, err );
// if profile is static, then 2D allocations should not be present
TEST_FOR_EXCEPTION( pftype_ == StaticProfile && (pbuf_lclInds2D_ != null || pbuf_gblInds2D_ != null), std::logic_error, err );
// if profile is dynamic, then row offsets should not be allocated (they are used only for 1D indexing)
TEST_FOR_EXCEPTION( pftype_ == DynamicProfile && pbuf_rowOffsets_ != null, std::logic_error, err );
// if profile is static and we have a non-trivial application, then roww offsets should be allocated
TEST_FOR_EXCEPTION( pftype_ == StaticProfile && indicesAreAllocated() && nodeNumAllocated_ > 0 && pbuf_rowOffsets_ == null, std::logic_error, err );
// if indices are not allocated, then non of the buffers should be.
TEST_FOR_EXCEPTION( indicesAreAllocated() == false && (pbuf_rowOffsets_ != null || numEntriesPerRow_ != null||
pbuf_lclInds1D_ != null || pbuf_lclInds2D_ != null ||
pbuf_gblInds1D_ != null || pbuf_gblInds2D_ != null), std::logic_error, err );
// for a trivial (i.e., zero) allocation, row offsets and num entries should be freed, because they are not needed
TEST_FOR_EXCEPTION( nodeNumAllocated_ == 0 && (pbuf_rowOffsets_ != null || numEntriesPerRow_ != null), std::logic_error, err );
// for a non-trivial allocation with optimal storage, num entries is redundant and therefore should be freed
TEST_FOR_EXCEPTION( indicesAreAllocated() && nodeNumAllocated_ > 0 && storageOptimized_ == true && numEntriesPerRow_ != null, std::logic_error, err );
// for a non-trivial allocation without optimal storage, num entries is necessary and should be present
TEST_FOR_EXCEPTION( indicesAreAllocated() && nodeNumAllocated_ > 0 && storageOptimized_ == false && numEntriesPerRow_ == null, std::logic_error, err );
// indices may be local or global only if they are allocated (numAllocated is redundant; could simply be indicesAreLocal_ || indicesAreGlobal_)
TEST_FOR_EXCEPTION( (indicesAreLocal_ == true || indicesAreGlobal_ == true) && indicesAreAllocated_ == false, std::logic_error, err );
// indices may be local or global, but not both
TEST_FOR_EXCEPTION( indicesAreLocal_ == true && indicesAreGlobal_ == true, std::logic_error, err );
// if indices are local, then global allocations should not be present
TEST_FOR_EXCEPTION( indicesAreLocal_ == true && (pbuf_gblInds1D_ != null || pbuf_gblInds2D_ != null), std::logic_error, err );
// if indices are global, then local allocations should not be present
TEST_FOR_EXCEPTION( indicesAreGlobal_ == true && (pbuf_lclInds1D_ != null || pbuf_lclInds2D_ != null), std::logic_error, err );
// if indices are local and non-trivial, then local allocations should be present
TEST_FOR_EXCEPTION( indicesAreLocal_ == true && nodeNumAllocated_ > 0 && pbuf_lclInds1D_ == null && pbuf_lclInds2D_ == null, std::logic_error, err );
// if indices are global and non-trivial, then global allocations should be present
TEST_FOR_EXCEPTION( indicesAreGlobal_ == true && nodeNumAllocated_ > 0 && pbuf_gblInds1D_ == null && pbuf_gblInds2D_ == null, std::logic_error, err );
// if indices are allocated, then we should have recorded how many were allocated
TEST_FOR_EXCEPTION( indicesAreAllocated() == true && nodeNumAllocated_ == sti, std::logic_error, err );
// if indices are not allocated, then the allocation size should be marked invalid
TEST_FOR_EXCEPTION( indicesAreAllocated() == false && nodeNumAllocated_ != sti, std::logic_error, err );
// check the actual allocations
size_t actualNumAllocated = 0;
if (pftype_ == DynamicProfile) {
if (isGloballyIndexed() && pbuf_gblInds2D_ != Teuchos::null) {
for (size_t r = 0; r < getNodeNumRows(); ++r) {
actualNumAllocated += pbuf_gblInds2D_[r].size();
}
}
else if (isLocallyIndexed() && pbuf_lclInds2D_ != Teuchos::null) {
for (size_t r = 0; r < getNodeNumRows(); ++r) {
actualNumAllocated += pbuf_lclInds2D_[r].size();
}
}
}
else { // pftype_ == StaticProfile)
if (pbuf_rowOffsets_ != Teuchos::null) {
if (view_rowOffsets_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::checkInternalState()")
Teuchos::ArrayRCP<const size_t> last_offset = node->template viewBuffer<size_t>(1,pbuf_rowOffsets_+getNodeNumRows());
actualNumAllocated = last_offset[0];
}
else {
actualNumAllocated = view_rowOffsets_[getNodeNumRows()];
}
}
else {
actualNumAllocated = 0;
}
TEST_FOR_EXCEPTION( isLocallyIndexed() == true && (size_t)pbuf_lclInds1D_.size() != actualNumAllocated, std::logic_error, err );
TEST_FOR_EXCEPTION( isGloballyIndexed() == true && (size_t)pbuf_gblInds1D_.size() != actualNumAllocated, std::logic_error, err );
}
TEST_FOR_EXCEPTION(indicesAreAllocated() == true && actualNumAllocated != nodeNumAllocated_, std::logic_error, err );
#endif
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::fillLocalGraph() {
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION( view_lclInds1D_ != Teuchos::null || view_lclInds2D_ != Teuchos::null || view_rowOffsets_ != Teuchos::null ||
view_gblInds1D_ != Teuchos::null || view_gblInds2D_ != Teuchos::null, std::logic_error,
Teuchos::typeName(*this) << "::fillLocalGraph(): Internal logic error. Please contact Tpetra team.");
#endif
lclGraph_.clear();
if (storageOptimized_) {
// fill packed matrix; it is okay for pbuf_lclInds1D_ to be null; the matrix will flag itself as empty
lclGraph_.setPackedStructure(pbuf_rowOffsets_, pbuf_lclInds1D_);
}
else if (getProfileType() == StaticProfile) {
if (pbuf_lclInds1D_ != Teuchos::null) {
const size_t nlrs = getNodeNumRows();
for (size_t r=0; r < nlrs; ++r) {
RowInfo sizeInfo = getRowInfo(r);
Teuchos::ArrayRCP<const LocalOrdinal> rowinds;
if (sizeInfo.numEntries > 0) {
rowinds = pbuf_lclInds1D_.persistingView(sizeInfo.offset1D, sizeInfo.numEntries);
lclGraph_.set2DIndices(r,rowinds);
}
}
}
}
else if (getProfileType() == DynamicProfile) {
if (pbuf_lclInds2D_ != Teuchos::null) {
const size_t nlrs = getNodeNumRows();
for (size_t r=0; r < nlrs; ++r) {
RowInfo sizeInfo = getRowInfo(r);
Teuchos::ArrayRCP<const LocalOrdinal> rowinds = pbuf_lclInds2D_[r];
if (sizeInfo.numEntries > 0) {
rowinds = rowinds.persistingView(0,sizeInfo.numEntries);
lclGraph_.set2DIndices(r,rowinds);
}
}
}
}
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
// //
// User-visible class methods //
// //
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNumEntriesInGlobalRow(GlobalOrdinal globalRow) const {
using Teuchos::OrdinalTraits;
const LocalOrdinal rlid = rowMap_->getLocalElement(globalRow);
size_t ret;
if (rlid == OrdinalTraits<LocalOrdinal>::invalid()) {
ret = OrdinalTraits<size_t>::invalid();
}
else {
ret = RNNZ(rlid);
}
return ret;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNumEntriesInLocalRow(LocalOrdinal localRow) const {
using Teuchos::OrdinalTraits;
size_t ret;
if (!rowMap_->isNodeLocalElement(localRow)) {
ret = OrdinalTraits<size_t>::invalid();
}
else {
ret = RNNZ(localRow);
}
return ret;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNumAllocatedEntriesInGlobalRow(GlobalOrdinal globalRow) const {
using Teuchos::OrdinalTraits;
const LocalOrdinal rlid = rowMap_->getLocalElement(globalRow);
size_t ret;
if (rlid == OrdinalTraits<LocalOrdinal>::invalid()) {
ret = OrdinalTraits<size_t>::invalid();
}
else {
ret = RNumAlloc(rlid);
}
return ret;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
size_t CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getNumAllocatedEntriesInLocalRow(LocalOrdinal localRow) const {
using Teuchos::OrdinalTraits;
size_t ret;
if (!rowMap_->isNodeLocalElement(localRow)) {
ret = OrdinalTraits<size_t>::invalid();
}
else {
ret = RNumAlloc(localRow);
}
return ret;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
Teuchos::ArrayRCP<const LocalOrdinal> CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getLocalRowView(LocalOrdinal LocalRow) const {
TEST_FOR_EXCEPTION(isGloballyIndexed() == true, std::runtime_error,
Teuchos::typeName(*this) << "::getLocalRowView(): local indices do not exist.");
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(LocalRow) == false, std::runtime_error,
Teuchos::typeName(*this) << "::getLocalRowView(LocalRow): LocalRow (== " << LocalRow << ") is not valid on this node.");
Teuchos::ArrayRCP<const LocalOrdinal> ret;
RowInfo sizeInfo = getFullLocalView(LocalRow, ret);
if (ret != Teuchos::null) {
ret = ret.persistingView(0,sizeInfo.numEntries);
}
return ret;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
Teuchos::ArrayRCP<const GlobalOrdinal> CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getGlobalRowView(GlobalOrdinal GlobalRow) const {
TEST_FOR_EXCEPTION(isLocallyIndexed() == true, std::runtime_error,
Teuchos::typeName(*this) << "::getGlobalRowView(): global indices do not exist.");
const LocalOrdinal lrow = rowMap_->getLocalElement(GlobalRow);
TEST_FOR_EXCEPTION(lrow == Teuchos::OrdinalTraits<LocalOrdinal>::invalid(), std::runtime_error,
Teuchos::typeName(*this) << "::getGlobalRowView(GlobalRow): GlobalRow (== " << GlobalRow << ") does not belong to this node.");
Teuchos::ArrayRCP<const GlobalOrdinal> ret;
RowInfo sizeInfo = getFullGlobalView(lrow, ret);
if (ret != Teuchos::null) {
ret = ret.persistingView(0,sizeInfo.numEntries);
}
return ret;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getLocalRowCopy(LocalOrdinal LocalRow, const Teuchos::ArrayView<LocalOrdinal> &indices, size_t &NumIndices) const {
// can only do this if
// * we have local indices: isLocallyIndexed()
// * we are capable of producing them: isGloballyIndexed() && hasColMap()
// short circuit if we aren't allocated
TEST_FOR_EXCEPTION(isGloballyIndexed() == true && hasColMap() == false, std::runtime_error,
Teuchos::typeName(*this) << "::getLocalRowCopy(): local indices cannot be produced.");
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(LocalRow) == false, std::runtime_error,
Teuchos::typeName(*this) << "::getLocalRowCopy(LocalRow,...): LocalRow (== " << LocalRow << ") is not valid on this node.");
// use one of the view routines to get the proper view, then copy it over
if (isLocallyIndexed()) {
Teuchos::ArrayRCP<const LocalOrdinal> lview;
RowInfo sizeInfo = getFullLocalView(LocalRow, lview);
NumIndices = sizeInfo.numEntries;
TEST_FOR_EXCEPTION((size_t)indices.size() < NumIndices, std::runtime_error,
Teuchos::typeName(*this) << "::getLocalRowCopy(): specified storage (size==" << indices.size()
<< ") is not large enough to hold all entries for this row (NumIndices == " << NumIndices << ").");
if (NumIndices > 0) {
std::copy( lview.begin(), lview.begin() + NumIndices, indices.begin());
}
lview = Teuchos::null;
}
else if (isGloballyIndexed()) {
Teuchos::ArrayRCP<const GlobalOrdinal> gview;
RowInfo sizeInfo = getFullGlobalView(LocalRow, gview);
NumIndices = sizeInfo.numEntries;
TEST_FOR_EXCEPTION((size_t)indices.size() < NumIndices, std::runtime_error,
Teuchos::typeName(*this) << "::getLocalRowCopy(): specified storage (size==" << indices.size()
<< ") is not large enough to hold all entries for this row (NumIndices == " << NumIndices << ").");
for (size_t j=0; j < NumIndices; ++j) {
indices[j] = colMap_->getLocalElement(gview[j]);
}
gview = Teuchos::null;
}
else {
#ifdef HAVE_TPETRA_DEBUG
// should have fallen in one of the above
TEST_FOR_EXCEPTION( indicesAreAllocated() == true, std::logic_error,
Teuchos::typeName(*this) << "::getLocalRowCopy(): Internal logic error. Please contact Tpetra team.");
#endif
NumIndices = 0;
}
return;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::getGlobalRowCopy(GlobalOrdinal GlobalRow, const Teuchos::ArrayView<GlobalOrdinal> &indices, size_t &NumIndices) const {
// we either currently store global indices, or we have a column map with which to transcribe our local indices for the user
const LocalOrdinal lrow = rowMap_->getLocalElement(GlobalRow);
TEST_FOR_EXCEPTION(lrow == Teuchos::OrdinalTraits<LocalOrdinal>::invalid(), std::runtime_error,
Teuchos::typeName(*this) << "::getGlobalRowCopy(GlobalRow,...): GlobalRow (== " << GlobalRow << ") does not belong to this node.");
// use one of the view routines to get the proper view, then copy it over
if (isLocallyIndexed()) {
Teuchos::ArrayRCP<const LocalOrdinal> lview;
RowInfo sizeInfo = getFullLocalView(static_cast<size_t>(lrow), lview);
NumIndices = sizeInfo.numEntries;
TEST_FOR_EXCEPTION((size_t)indices.size() < NumIndices, std::runtime_error,
Teuchos::typeName(*this) << "::getGlobalRowCopy(): specified storage (size==" << indices.size()
<< ") is not large enough to hold all entries for this row (NumIndices == " << NumIndices << ").");
// copy and convert
for (size_t j=0; j < NumIndices; ++j) {
indices[j] = colMap_->getGlobalElement(lview[j]);
}
lview = Teuchos::null;
}
else if (isGloballyIndexed()) {
Teuchos::ArrayRCP<const GlobalOrdinal> gview;
RowInfo sizeInfo = getFullGlobalView(static_cast<size_t>(lrow), gview);
NumIndices = sizeInfo.numEntries;
TEST_FOR_EXCEPTION((size_t)indices.size() < NumIndices, std::runtime_error,
Teuchos::typeName(*this) << "::getGlobalRowCopy(): specified storage (size==" << indices.size()
<< ") is not large enough to hold all entries for this row (NumIndices == " << NumIndices << ").");
std::copy(gview.begin(), gview.begin() + NumIndices, indices.begin());
gview = Teuchos::null;
}
return;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::insertLocalIndices(LocalOrdinal lrow, const Teuchos::ArrayView<const LocalOrdinal> &indices) {
using Teuchos::ArrayRCP;
TEST_FOR_EXCEPTION(isStorageOptimized() == true, std::runtime_error,
Teuchos::typeName(*this) << "::insertLocalIndices(): cannot insert new indices after optimizeStorage() has been called.");
TEST_FOR_EXCEPTION(isGloballyIndexed() == true, std::runtime_error,
Teuchos::typeName(*this) << "::insertLocalIndices(): graph indices are global; use insertGlobalIndices().");
TEST_FOR_EXCEPTION(hasColMap() == false, std::runtime_error,
Teuchos::typeName(*this) << "::insertLocalIndices(): cannot insert local indices without a column map.");
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(lrow) == false, std::runtime_error,
Teuchos::typeName(*this) << "::insertLocalIndices(): row does not belong to this node.");
if (indicesAreAllocated() == false) {
allocateIndices(AllocateLocal);
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(indicesAreAllocated() == false, std::logic_error,
Teuchos::typeName(*this) << "::insertLocalIndices(): Internal logic error. Please contact Tpetra team.");
#endif
}
//
indicesAreSorted_ = false;
noRedundancies_ = false;
clearGlobalConstants();
//
// add to allocated space
ArrayRCP<LocalOrdinal> rowview;
RowInfo sizeInfo = getFullLocalViewNonConst(lrow, rowview);
const size_t newSize = sizeInfo.numEntries + indices.size();
if (newSize > sizeInfo.allocSize) {
TEST_FOR_EXCEPTION(getProfileType() == StaticProfile, std::runtime_error,
Teuchos::typeName(*this) << "::insertLocalIndices(): new indices exceed statically allocated graph structure.");
TPETRA_EFFICIENCY_WARNING(true, std::runtime_error,
"::insertLocalIndices(): Pre-allocated space has been exceeded, requiring new allocation. To improve efficiency, suggest larger allocation.");
// update allocation only as much as necessary
updateLocalAllocation(lrow,newSize);
// get new view; inefficient, but acceptible in this already inefficient case
sizeInfo = getFullLocalViewNonConst(lrow, rowview);
}
// get pointers to row allocation
ArrayRCP<LocalOrdinal> rowptr = rowview + sizeInfo.numEntries;
// check the local indices against the column map; only add ones that are defined
typename Teuchos::ArrayView<const LocalOrdinal>::iterator srcind = indices.begin();
while (srcind != indices.end()) {
if (colMap_->isNodeLocalElement(*srcind)) {
(*rowptr++) = (*srcind);
}
++srcind;
}
numEntriesPerRow_[lrow] = rowptr - rowview;
rowptr = Teuchos::null;
rowview = Teuchos::null;
// checkInternalState();
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::removeLocalIndices(LocalOrdinal lrow) {
TEST_FOR_EXCEPTION(isStorageOptimized() == true, std::runtime_error,
Teuchos::typeName(*this) << "::removeLocalIndices(): cannot remove indices after optimizeStorage() has been called.");
TEST_FOR_EXCEPTION(isGloballyIndexed() == true, std::runtime_error,
Teuchos::typeName(*this) << "::removeLocalIndices(): graph indices are global; use removeGlobalIndices().");
TEST_FOR_EXCEPTION(rowMap_->isNodeLocalElement(lrow) == false, std::runtime_error,
Teuchos::typeName(*this) << "::removeLocalIndices(): row does not belong to this node.");
if (indicesAreAllocated() == false) {
allocateIndices(AllocateLocal);
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(indicesAreAllocated() == false, std::logic_error,
Teuchos::typeName(*this) << "::removeLocalIndices(): Internal logic error. Please contact Tpetra team.");
#endif
}
//
clearGlobalConstants();
//
RowInfo sizeInfo = getRowInfo(lrow);
if (sizeInfo.allocSize > 0 && numEntriesPerRow_ != Teuchos::null) {
numEntriesPerRow_[lrow] = 0;
}
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::insertGlobalIndices(GlobalOrdinal grow, const Teuchos::ArrayView<const GlobalOrdinal> &indices) {
using Teuchos::OrdinalTraits;
using Teuchos::ArrayRCP;
TEST_FOR_EXCEPTION(isLocallyIndexed() == true, std::runtime_error,
Teuchos::typeName(*this) << "::insertGlobalIndices(): graph indices are local; use insertLocalIndices().");
if (indicesAreAllocated() == false) {
allocateIndices(AllocateGlobal);
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(indicesAreAllocated() == false, std::logic_error,
Teuchos::typeName(*this) << "::insertGlobalIndices(): Internal logic error. Please contact Tpetra team.");
#endif
}
//
indicesAreSorted_ = false;
noRedundancies_ = false;
clearGlobalConstants();
//
const LocalOrdinal lrow = rowMap_->getLocalElement(grow);
if (lrow != OrdinalTraits<LocalOrdinal>::invalid()) {
//
// add to allocated space
ArrayRCP<GlobalOrdinal> rowview;
RowInfo sizeInfo = getFullGlobalViewNonConst(static_cast<size_t>(lrow), rowview);
const size_t newSize = sizeInfo.numEntries + indices.size();
if (newSize > sizeInfo.allocSize) {
TEST_FOR_EXCEPTION(getProfileType() == StaticProfile, std::runtime_error,
Teuchos::typeName(*this) << "::insertGlobalIndices(): new indices exceed statically allocated graph structure.");
TPETRA_EFFICIENCY_WARNING(true,std::runtime_error,
"::insertGlobalIndices(): Pre-allocated space has been exceeded, requiring new allocation. To improve efficiency, suggest larger allocation.");
// update allocation
updateGlobalAllocation(static_cast<size_t>(lrow),newSize);
// get new view; inefficient, but acceptible in this already inefficient case
sizeInfo = getFullGlobalViewNonConst(static_cast<size_t>(lrow), rowview);
}
ArrayRCP<GlobalOrdinal> rowptr = rowview + sizeInfo.numEntries;
if (hasColMap()) {
// check the global indices against the column map; only add ones that are defined
typename Teuchos::ArrayView<const GlobalOrdinal>::iterator srcind = indices.begin();
while (srcind != indices.end()) {
if (colMap_->isNodeGlobalElement(*srcind)) {
(*rowptr++) = (*srcind);
}
++srcind;
}
numEntriesPerRow_[lrow] = rowptr - rowview;
}
else {
std::copy( indices.begin(), indices.end(), rowptr );
numEntriesPerRow_[lrow] += indices.size();
}
rowptr = Teuchos::null;
rowview = Teuchos::null;
}
else {
// a nonlocal row
for (typename Teuchos::ArrayView<const GlobalOrdinal>::iterator i=indices.begin(); i != indices.end(); ++i) {
nonlocals_[grow].push_back(*i);
}
}
// checkInternalState();
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::globalAssemble() {
using Teuchos::arcp;
using Teuchos::Array;
using Teuchos::ArrayView;
using Teuchos::ArrayRCP;
using Teuchos::RCP;
using Teuchos::rcp;
using Teuchos::outArg;
using std::deque;
using std::pair;
using std::make_pair;
using Teuchos::outArg;
typedef typename std::map<GlobalOrdinal,std::deque<GlobalOrdinal> >::const_iterator NLITER;
int numImages = Teuchos::size(*getComm());
int myImageID = Teuchos::rank(*getComm());
// Determine if any nodes have global entries to share
{
size_t MyNonlocals = nonlocals_.size(), MaxGlobalNonlocals;
Teuchos::reduceAll<int,size_t>(*getComm(),Teuchos::REDUCE_MAX,MyNonlocals,
outArg(MaxGlobalNonlocals));
if (MaxGlobalNonlocals == 0) return; // no entries to share
}
// compute a list of NLRs from nonlocals_ and use it to compute:
// IdsAndRows: a vector of (id,row) pairs
// NLR2Id: a map from NLR to the Id that owns it
// globalNeighbors: a global graph of connectivity between images: globalNeighbors(i,j) indicates that j sends to i
// sendIDs: a list of all images I send to
// recvIDs: a list of all images I receive from (constructed later)
Array<pair<int,GlobalOrdinal> > IdsAndRows;
std::map<GlobalOrdinal,int> NLR2Id;
Teuchos::SerialDenseMatrix<int,char> globalNeighbors;
Array<int> sendIDs, recvIDs;
{
// nonlocals_ contains the entries we are holding for all non-local rows
// we want a list of the rows for which we have data
Array<GlobalOrdinal> NLRs;
std::set<GlobalOrdinal> setOfRows;
for (NLITER iter = nonlocals_.begin(); iter != nonlocals_.end(); ++iter) {
setOfRows.insert(iter->first);
}
// copy the elements in the set into an Array
NLRs.resize(setOfRows.size());
std::copy(setOfRows.begin(), setOfRows.end(), NLRs.begin());
// get a list of ImageIDs for the non-local rows (NLRs)
Array<int> NLRIds(NLRs.size());
{
LookupStatus stat = rowMap_->getRemoteIndexList(NLRs(),NLRIds());
char lclerror = ( stat == IDNotPresent ? 1 : 0 );
char gblerror;
Teuchos::reduceAll(*getComm(),Teuchos::REDUCE_MAX,lclerror,outArg(gblerror));
TEST_FOR_EXCEPTION(gblerror != 0, std::runtime_error,
Teuchos::typeName(*this) << "::globalAssemble(): non-local entries correspond to invalid rows.");
}
// build up a list of neighbors, as well as a map between NLRs and Ids
// localNeighbors[i] != 0 iff I have data to send to image i
// put NLRs,Ids into an array of pairs
IdsAndRows.reserve(NLRs.size());
Array<char> localNeighbors(numImages,0);
typename Array<GlobalOrdinal>::const_iterator nlr;
typename Array<int>::const_iterator id;
for (nlr = NLRs.begin(), id = NLRIds.begin();
nlr != NLRs.end(); ++nlr, ++id) {
NLR2Id[*nlr] = *id;
localNeighbors[*id] = 1;
IdsAndRows.push_back(make_pair<int,GlobalOrdinal>(*id,*nlr));
}
for (int j=0; j<numImages; ++j) {
if (localNeighbors[j]) {
sendIDs.push_back(j);
}
}
// sort IdsAndRows, by Ids first, then rows
std::sort(IdsAndRows.begin(),IdsAndRows.end());
// gather from other nodes to form the full graph
globalNeighbors.shapeUninitialized(numImages,numImages);
Teuchos::gatherAll(*getComm(),numImages,localNeighbors.getRawPtr(),numImages*numImages,globalNeighbors.values());
// globalNeighbors at this point contains (on all images) the
// connectivity between the images.
// globalNeighbors(i,j) != 0 means that j sends to i/that i receives from j
}
//////////////////////////////////////////////////////////////////////////////////////
// FIGURE OUT WHO IS SENDING TO WHOM AND HOW MUCH
// DO THIS IN THE PROCESS OF PACKING ALL OUTGOING DATA ACCORDING TO DESTINATION ID
//////////////////////////////////////////////////////////////////////////////////////
// loop over all columns to know from which images I can expect to receive something
for (int j=0; j<numImages; ++j) {
if (globalNeighbors(myImageID,j)) {
recvIDs.push_back(j);
}
}
const size_t numRecvs = recvIDs.size();
// we know how many we're sending to already
// form a contiguous list of all data to be sent
// track the number of entries for each ID
Array<pair<GlobalOrdinal,GlobalOrdinal> > IJSendBuffer;
Array<size_t> sendSizes(sendIDs.size(), 0);
size_t numSends = 0;
for (typename Array<pair<int,GlobalOrdinal> >::const_iterator IdAndRow = IdsAndRows.begin();
IdAndRow != IdsAndRows.end(); ++IdAndRow) {
int id = IdAndRow->first;
GlobalOrdinal row = IdAndRow->second;
// have we advanced to a new send?
if (sendIDs[numSends] != id) {
numSends++;
TEST_FOR_EXCEPTION(sendIDs[numSends] != id, std::logic_error, Teuchos::typeName(*this) << "::globalAssemble(): internal logic error. Contact Tpetra team.");
}
// copy data for row into contiguous storage
for (typename deque<GlobalOrdinal>::const_iterator j = nonlocals_[row].begin(); j != nonlocals_[row].end(); ++j)
{
IJSendBuffer.push_back( pair<GlobalOrdinal,GlobalOrdinal>(row,*j) );
sendSizes[numSends]++;
}
}
if (IdsAndRows.size() > 0) {
numSends++; // one last increment, to make it a count instead of an index
}
TEST_FOR_EXCEPTION(Teuchos::as<typename Array<int>::size_type>(numSends) != sendIDs.size(), std::logic_error, Teuchos::typeName(*this) << "::globalAssemble(): internal logic error. Contact Tpetra team.");
// don't need this data anymore
nonlocals_.clear();
//////////////////////////////////////////////////////////////////////////////////////
// TRANSMIT SIZE INFO BETWEEN SENDERS AND RECEIVERS
//////////////////////////////////////////////////////////////////////////////////////
// perform non-blocking sends: send sizes to our recipients
Array<RCP<Teuchos::CommRequest> > sendRequests;
for (size_t s=0; s < numSends ; ++s) {
// we'll fake the memory management, because all communication will be local to this method and the scope of our data
sendRequests.push_back( Teuchos::isend<int,size_t>(*getComm(),rcp<size_t>(&sendSizes[s],false),sendIDs[s]) );
}
// perform non-blocking receives: receive sizes from our senders
Array<RCP<Teuchos::CommRequest> > recvRequests;
Array<size_t> recvSizes(numRecvs);
for (size_t r=0; r < numRecvs; ++r) {
// we'll fake the memory management, because all communication will be local to this method and the scope of our data
recvRequests.push_back( Teuchos::ireceive(*getComm(),rcp(&recvSizes[r],false),recvIDs[r]) );
}
// wait on all
if (!sendRequests.empty()) {
Teuchos::waitAll(*getComm(),sendRequests());
}
if (!recvRequests.empty()) {
Teuchos::waitAll(*getComm(),recvRequests());
}
Teuchos::barrier(*getComm());
sendRequests.clear();
recvRequests.clear();
////////////////////////////////////////////////////////////////////////////////////
// NOW SEND/RECEIVE ALL ROW DATA
////////////////////////////////////////////////////////////////////////////////////
// from the size info, build the ArrayViews into IJSendBuffer
Array<ArrayView<pair<GlobalOrdinal,GlobalOrdinal> > > sendBuffers(numSends,Teuchos::null);
{
size_t cur = 0;
for (size_t s=0; s<numSends; ++s) {
sendBuffers[s] = IJSendBuffer(cur,sendSizes[s]);
cur += sendSizes[s];
}
}
// perform non-blocking sends
for (size_t s=0; s < numSends ; ++s)
{
// we'll fake the memory management, because all communication will be local to this method and the scope of our data
ArrayRCP<pair<GlobalOrdinal,GlobalOrdinal> > tmparcp = arcp(sendBuffers[s].getRawPtr(),0,sendBuffers[s].size(),false);
sendRequests.push_back( Teuchos::isend<int,pair<GlobalOrdinal,GlobalOrdinal> >(*getComm(),tmparcp,sendIDs[s]) );
}
// calculate amount of storage needed for receives
// setup pointers for the receives as well
size_t totalRecvSize = std::accumulate(recvSizes.begin(),recvSizes.end(),0);
Array<pair<GlobalOrdinal,GlobalOrdinal> > IJRecvBuffer(totalRecvSize);
// from the size info, build the ArrayViews into IJRecvBuffer
Array<ArrayView<pair<GlobalOrdinal,GlobalOrdinal> > > recvBuffers(numRecvs,Teuchos::null);
{
size_t cur = 0;
for (size_t r=0; r<numRecvs; ++r) {
recvBuffers[r] = IJRecvBuffer(cur,recvSizes[r]);
cur += recvSizes[r];
}
}
// perform non-blocking recvs
for (size_t r=0; r < numRecvs ; ++r) {
// we'll fake the memory management, because all communication will be local to this method and the scope of our data
ArrayRCP<pair<GlobalOrdinal,GlobalOrdinal> > tmparcp = arcp(recvBuffers[r].getRawPtr(),0,recvBuffers[r].size(),false);
recvRequests.push_back( Teuchos::ireceive(*getComm(),tmparcp,recvIDs[r]) );
}
// perform waits
if (!sendRequests.empty()) {
Teuchos::waitAll(*getComm(),sendRequests());
}
if (!recvRequests.empty()) {
Teuchos::waitAll(*getComm(),recvRequests());
}
Teuchos::barrier(*getComm());
sendRequests.clear();
recvRequests.clear();
////////////////////////////////////////////////////////////////////////////////////
// NOW PROCESS THE RECEIVED ROW DATA
////////////////////////////////////////////////////////////////////////////////////
// TODO: instead of adding one entry at a time, add one row at a time.
// this requires resorting; they arrived sorted by sending node, so that entries could be non-contiguous if we received
// multiple entries for a particular row from different processors.
// it also requires restoring the data, which may make it not worth the trouble.
for (typename Array<pair<GlobalOrdinal,GlobalOrdinal> >::const_iterator ij = IJRecvBuffer.begin(); ij != IJRecvBuffer.end(); ++ij) {
insertGlobalIndices(ij->first, Teuchos::tuple<GlobalOrdinal>(ij->second));
}
checkInternalState();
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::fillComplete(OptimizeOption os) {
fillComplete(rowMap_,rowMap_,os);
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::fillComplete(const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &domainMap,
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &rangeMap,
OptimizeOption os) {
using Teuchos::Array;
using Teuchos::ArrayRCP;
using Teuchos::outArg;
domainMap_ = domainMap;
rangeMap_ = rangeMap;
if (indicesAreAllocated() == false) {
// must allocate global, because we have no column map
allocateIndices( AllocateGlobal );
}
if (Teuchos::size(*getComm()) > 1) {
globalAssemble();
}
else {
TEST_FOR_EXCEPTION(nonlocals_.size() > 0, std::runtime_error,
Teuchos::typeName(*this) << "::fillComplete(): cannot have non-local entries on a serial run. Invalid entries were submitted to the CrsMatrix.");
}
makeIndicesLocal(domainMap, rangeMap); // create column map, allocate/reapportion space for local indices, transform global indices to local indices
sortIndices(); // sort local indices
removeRedundantIndices(); // remove redundant indices, count non-zero entries, count diagonals, check triangularity
makeImportExport(); // create import and export object
// compute global constants using computed local constants
if (haveGlobalConstants_ == false) {
global_size_t lcl[2], gbl[2];
lcl[0] = nodeNumEntries_;
lcl[1] = nodeNumDiags_;
Teuchos::reduceAll<int,global_size_t>(*getComm(),Teuchos::REDUCE_SUM,2,lcl,gbl);
globalNumEntries_ = gbl[0];
globalNumDiags_ = gbl[1];
Teuchos::reduceAll<int,global_size_t>(*getComm(),Teuchos::REDUCE_MAX,nodeMaxNumRowEntries_,
outArg(globalMaxNumRowEntries_));
haveGlobalConstants_ = true;
}
// mark transformation as successfully completed
fillComplete_ = true;
checkInternalState();
if (os == DoOptimizeStorage) {
// optimizeStorage will call fillLocalGraph()
optimizeStorage();
}
else {
// clear all views, so that changes can be written
view_lclInds1D_ = Teuchos::null;
view_rowOffsets_ = Teuchos::null;
view_lclInds2D_ = Teuchos::null;
fillLocalGraph();
}
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::makeIndicesLocal(
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &domainMap,
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &rangeMap) {
using Teuchos::ArrayRCP;
using Teuchos::NullIteratorTraits;
// All nodes must be in the same index state.
// Update index state by checking isLocallyIndexed/Global on all nodes
computeIndexState();
TEST_FOR_EXCEPTION(isLocallyIndexed() && isGloballyIndexed(), std::logic_error,
Teuchos::typeName(*this) << "::makeIndicesLocal(): indices are marked as both global and local.");
// If user has not prescribed column map, create one from indices
makeColMap(domainMap, rangeMap);
// Transform indices to local index space
const size_t nlrs = getNodeNumRows();
Teuchos::RCP<Node> node = lclGraph_.getNode();
//
if (isGloballyIndexed() && nlrs > 0) {
// allocate data for local indices
if (nodeNumAllocated_ > 0) {
if (getProfileType() == StaticProfile) {
if (view_gblInds1D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::makeIndicesLocal()")
view_gblInds1D_ = node->template viewBufferNonConst<GlobalOrdinal>(Kokkos::ReadWrite, pbuf_gblInds1D_.size(), pbuf_gblInds1D_);
}
// do the conversion in situ. this must be done from front to back.
view_lclInds1D_ = Teuchos::arcp_reinterpret_cast<LocalOrdinal>(view_gblInds1D_).persistingView(0,nodeNumAllocated_);
for (size_t r=0; r < getNodeNumRows(); ++r) {
const size_t offset = view_rowOffsets_[r],
numentry = numEntriesPerRow_[r];
for (size_t j=0; j<numentry; ++j) {
GlobalOrdinal gid = view_gblInds1D_[offset + j];
LocalOrdinal lid = colMap_->getLocalElement(gid);
view_lclInds1D_[offset + j] = lid;
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(view_lclInds1D_[offset + j] == Teuchos::OrdinalTraits<LocalOrdinal>::invalid(), std::logic_error,
Teuchos::typeName(*this) << ": Internal error in fillComplete(). Please contact Tpetra team.");
#endif
}
}
// reinterpret the the compute buffer as LocalOrdinal; keep the original size
pbuf_lclInds1D_ = Teuchos::arcp_reinterpret_cast<LocalOrdinal>(pbuf_gblInds1D_).persistingView(0,nodeNumAllocated_);
// order of deletion doesn't matter; view_lclInds1D_ points to view_gblInds2D_, so there will be no copy-back
pbuf_gblInds1D_ = Teuchos::null;
view_gblInds1D_ = Teuchos::null;
}
else { // getProfileType() == DynamicProfile
pbuf_lclInds2D_ = Teuchos::arcp< Teuchos::ArrayRCP<LocalOrdinal> >(nlrs);
// if we have views, then make views
if (view_gblInds2D_ != Teuchos::null) {
view_lclInds2D_ = Kokkos::ArrayOfViewsHelper<Node>::template getArrayOfNonConstViews<LocalOrdinal>(node, Kokkos::WriteOnly, pbuf_lclInds2D_);
}
for (size_t r=0; r < getNodeNumRows(); ++r) {
if (pbuf_gblInds2D_[r] != Teuchos::null) {
const size_t rna = pbuf_gblInds2D_[r].size();
ArrayRCP<GlobalOrdinal> view_ginds;
ArrayRCP< LocalOrdinal> view_linds;
if (view_gblInds2D_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::makeIndicesLocal()")
view_ginds = node->template viewBufferNonConst<GlobalOrdinal>(Kokkos::ReadWrite,rna,pbuf_gblInds2D_[r]);
}
else {
view_ginds = view_gblInds2D_[r];
}
// do the conversion in situ. this must be done from front to back.
view_linds = Teuchos::arcp_reinterpret_cast<LocalOrdinal>(view_ginds).persistingView(0,rna);
const size_t numentry = numEntriesPerRow_[r];
for (size_t j=0; j < numentry; ++j) {
GlobalOrdinal gid = view_ginds[j];
LocalOrdinal lid = colMap_->getLocalElement(gid);
view_linds[j] = lid;
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION(view_linds[j] == Teuchos::OrdinalTraits<LocalOrdinal>::invalid(), std::logic_error,
Teuchos::typeName(*this) << ": Internal error in makeIndicesLocal(). Please contact Tpetra team.");
#endif
}
if (view_lclInds2D_ != Teuchos::null) {
view_lclInds2D_[r] = view_linds;
}
view_linds = Teuchos::null;
view_ginds = Teuchos::null;
// reinterpret the the compute buffer as LocalOrdinal; keep the original size
pbuf_lclInds2D_[r] = Teuchos::arcp_reinterpret_cast<LocalOrdinal>(pbuf_gblInds2D_[r]).persistingView(0,rna);
pbuf_gblInds2D_[r] = Teuchos::null;
}
}
pbuf_gblInds2D_ = Teuchos::null;
view_gblInds2D_ = Teuchos::null;
}
}
// don't set this unless we actually did something
indicesAreLocal_ = true;
}
indicesAreGlobal_ = false;
checkInternalState();
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::computeIndexState() {
char myIndices[2] = {0,0};
if (indicesAreLocal_) myIndices[0] = 1;
if (indicesAreGlobal_) myIndices[1] = 1;
char allIndices[2];
Teuchos::reduceAll(*getComm(),Teuchos::REDUCE_MAX,2,myIndices,allIndices);
indicesAreLocal_ = (allIndices[0]==1); // If indices are local on one PE, should be local on all
indicesAreGlobal_ = (allIndices[1]==1); // If indices are global on one PE should be local on all
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::sortIndices() {
TEST_FOR_EXCEPT(isGloballyIndexed()==true && indicesAreAllocated_ && nodeNumAllocated_ > 0); // this should be called only after makeIndicesLocal()
if (isSorted()) return;
// are there any indices to sort?
if (nodeNumAllocated_ > 0) {
const size_t nlrs = getNodeNumRows();
for (size_t r=0; r < nlrs; ++r) {
// TODO: This is slightly inefficient, because it may query pbuf_rowOffsets_ repeatadly.
// However, it is very simple code. Consider rewriting it.
Teuchos::ArrayRCP<LocalOrdinal> row_view;
RowInfo info = getFullLocalViewNonConst(r, row_view);
std::sort(row_view, row_view + info.numEntries);
}
}
setSorted(true);
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::makeColMap(
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &domainMap,
const Teuchos::RCP<const Map<LocalOrdinal,GlobalOrdinal,Node> > &rangeMap) {
using Teuchos::ArrayRCP;
using Teuchos::Array;
using Teuchos::ArrayView;
using Teuchos::outArg;
typedef Teuchos::OrdinalTraits<GlobalOrdinal> GOT;
//
if (hasColMap()) return;
const size_t nlrs = getNodeNumRows();
//
computeIndexState();
TEST_FOR_EXCEPTION(isLocallyIndexed() == true, std::runtime_error,
Teuchos::typeName(*this) << "::makeColMap(): indices must still be global when making the column map.");
// ultimate goal: list of indices for column map
Array<GlobalOrdinal> myColumns;
// if isGloballyIndexed() == false and isLocallyIndexed() == false, then we have nothing to do
if (isGloballyIndexed() == true) {
// Construct two lists of columns for which we have a non-zero
// Local GIDs: Column GIDs which are locally present on the Domain map
// Remote GIDs: Column GIDs which are not locally present present on the Domain map
//
// instead of list of local GIDs, we will use a set<LocalOrdinal> LocalGID.
//
const LocalOrdinal LINV = Teuchos::OrdinalTraits<LocalOrdinal>::invalid();
size_t numLocalColGIDs = 0, numRemoteColGIDs = 0;
//
// intitial: partitioning into local and remote
Teuchos::Array<char> GIDisLocal(domainMap->getNodeNumElements(),0);
std::set<GlobalOrdinal> RemoteGIDSet;
for (size_t r=0; r < nlrs; ++r) {
ArrayRCP<GlobalOrdinal> rowgids;
RowInfo info = getFullGlobalViewNonConst(r, rowgids);
if (info.numEntries > 0) {
rowgids = rowgids.persistingView(0, info.numEntries);
for (typename ArrayRCP<GlobalOrdinal>::iterator cind = rowgids.begin(); cind != rowgids.end(); ++cind) {
GlobalOrdinal gid = (*cind);
LocalOrdinal lid = domainMap->getLocalElement(gid);
if (lid != LINV) {
char alreadyFound = GIDisLocal[lid];
if (alreadyFound == 0) {
GIDisLocal[lid] = 1;
++numLocalColGIDs;
}
}
else {
std::pair<typename std::set<GlobalOrdinal>::iterator, bool> ip;
ip = RemoteGIDSet.insert(gid);
if (ip.second == true) { // gid did not exist in the set and was actually inserted
++numRemoteColGIDs;
}
}
}
}
rowgids = Teuchos::null;
}
// Possible short-circuit for serial scenario
// If the all domain GIDs are present as column indices, then set ColMap=DomainMap
// By construction, LocalGIDs \subset DomainGIDs
// If we have
// * Number of remote GIDs is 0, so that ColGIDs == LocalGIDs,
// and
// * Number of local GIDs is number of domain GIDs
// then
// * LocalGIDs \subset DomainGIDs && size(LocalGIDs) == size(DomainGIDs) => DomainGIDs == LocalGIDs == ColGIDs
// on this node.
// We will concern ourselves only with the special case of a serial DomainMap, obliviating the need for a communication.
// If
// * DomainMap has a serial comm
// then we can set Column map as Domain map and return. Benefit: this graph won't need an Import object later.
//
// Note, for a serial domain map, there can be no RemoteGIDs, because there are no remote nodes.
// Likely explanations for this are:
// * user submitted erroneous column indices
// * user submitted erroneous domain map
if (Teuchos::size(*domainMap->getComm()) == 1) {
TEST_FOR_EXCEPTION(numRemoteColGIDs != 0, std::runtime_error,
Teuchos::typeName(*this) << "::makeColMap(): Some column IDs are not in the domain map." << std::endl
<< "Either these column IDs are invalid or the domain map is invalid." << std::endl
<< "Remember, for a rectangular matrix, the domain map must be passed to fillComplete().");
if (numLocalColGIDs == domainMap->getNodeNumElements()) {
colMap_ = domainMap;
checkInternalState();
return;
}
}
// Now, populate myColumns() with a list of all column GIDs.
// Put local GIDs at the front: they correspond to "same" and "permuted" entries between the column map and the domain map
// Put remote GIDs at the back
myColumns.resize(numLocalColGIDs + numRemoteColGIDs);
// get pointers into myColumns for each part
ArrayView<GlobalOrdinal> LocalColGIDs, RemoteColGIDs;
LocalColGIDs = myColumns(0,numLocalColGIDs);
RemoteColGIDs = myColumns(numLocalColGIDs,numRemoteColGIDs);
// Copy the Remote GIDs into myColumns
std::copy(RemoteGIDSet.begin(), RemoteGIDSet.end(), RemoteColGIDs.begin());
// We will make a list of corresponding node IDs
Array<int> RemoteImageIDs(numRemoteColGIDs);
// Lookup the Remote Nodes IDs in the Domain map
{
LookupStatus stat = domainMap->getRemoteIndexList(RemoteColGIDs, RemoteImageIDs());
// This error check is crucial: this tells us that one of the remote indices was not present in the domain map.
// This means that the Import object cannot be constructed, because of incongruity between the column map and domain map.
// * The user has made a mistake in the column indices
// * The user has made a mistake w.r.t. the domain map
// Same error message as above for serial case.
char missingID_lcl = (stat == IDNotPresent ? 1 : 0);
char missingID_gbl;
Teuchos::reduceAll<int,char>(*getComm(),Teuchos::REDUCE_MAX,missingID_lcl,
outArg(missingID_gbl));
TEST_FOR_EXCEPTION(missingID_gbl == 1, std::runtime_error,
Teuchos::typeName(*this) << "::makeColMap(): Some column IDs are not in the domain map." << std::endl
<< "Either these column IDs are invalid or the domain map is invalid." << std::endl
<< "Common cause: for a rectangular matrix, the domain map must be passed to fillComplete().");
}
// Sort External column indices so that all columns coming from a given remote processor are contiguous
// This obliviates the need for the Distributor associated with the Import from having to reorder data.
sort2(RemoteImageIDs.begin(), RemoteImageIDs.end(), RemoteColGIDs.begin());
// Copy the Local GIDs into myColumns. Two cases:
// (1) If the number of Local column GIDs is the same as the number of Local domain GIDs, we
// can simply read the domain GIDs into the front part of ColIndices (see logic above from the serial short circuit case)
// (2) We step through the GIDs of the DomainMap, checking to see if each domain GID is a column GID.
// we want to do this to maintain a consistent ordering of GIDs between the columns and the domain.
ArrayView<const GlobalOrdinal> mge = domainMap->getNodeElementList();
if (numLocalColGIDs == domainMap->getNodeNumElements()) {
std::copy(mge.begin(), mge.end(), LocalColGIDs.begin());
}
else {
size_t numlocalagain = 0;
for (size_t i=0; i < domainMap->getNodeNumElements(); ++i) {
if (GIDisLocal[i]) {
LocalColGIDs[numlocalagain++] = mge[i];
}
}
TEST_FOR_EXCEPTION(numlocalagain != numLocalColGIDs, std::logic_error,
Teuchos::typeName(*this) << "::makeColMap(): Internal logic error. Please contact Tpetra team.");
}
}
colMap_ = Teuchos::rcp(new Map<LocalOrdinal,GlobalOrdinal,Node>(GOT::invalid(), myColumns, domainMap->getIndexBase(), domainMap->getComm(), domainMap->getNode()) );
checkInternalState();
return;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::removeRedundantIndices() {
TEST_FOR_EXCEPT( isGloballyIndexed() != false ); // this should be called only after makeIndicesLocal()
TEST_FOR_EXCEPT( isSorted() != true ); // this should be called only after sortIndices()
TEST_FOR_EXCEPT( isStorageOptimized() == true ); // assumptions about available data structures
if ( notRedundant() ) return;
const size_t nlrs = getNodeNumRows();
Teuchos::ArrayView<const GlobalOrdinal> myGlobalEntries = rowMap_->getNodeElementList();
// reset all local quantities
upperTriangular_ = true;
lowerTriangular_ = true;
nodeMaxNumRowEntries_ = 0;
nodeNumEntries_ = 0;
nodeNumDiags_ = 0;
// indices are already sorted in each row
if (indicesAreAllocated() == true && nodeNumAllocated_ > 0) {
for (size_t r=0; r < nlrs; ++r) {
GlobalOrdinal rgid = myGlobalEntries[r];
// determine the local column index for this row, used for delimiting the diagonal
const LocalOrdinal rlcid = colMap_->getLocalElement(rgid);
Teuchos::ArrayRCP<LocalOrdinal> rview;
RowInfo info = getFullLocalViewNonConst(r, rview);
typename Teuchos::ArrayRCP<LocalOrdinal>::iterator beg, end;
beg = rview.begin();
end = beg + info.numEntries;
typename Teuchos::ArrayRCP<LocalOrdinal>::iterator newend, cur;
newend = beg;
if (beg != end) {
if (rlcid == (*newend)) ++nodeNumDiags_;
for (cur = beg + 1; cur != end; ++cur) {
// it is unique; add it and test it for the diagonal
// otherwise, it is a dup and should be ignored
if (*cur != *newend) {
++newend;
(*newend) = (*cur);
// is this the diagonal?
if (rlcid == (*newend)) ++nodeNumDiags_;
}
}
// because of sorting, smallest column index is (*beg); it indicates upper triangularity
if (Teuchos::as<size_t>(*beg) < r) upperTriangular_ = false;
// because of sorting, largest column index is (*newend); it indicates lower triangularity
if (r < Teuchos::as<size_t>(*newend)) lowerTriangular_ = false;
// increment newend so that our range is [beg,newend) instead of [beg,newend]
++newend;
}
// compute num entries for this row, accumulate into nodeNumEntries_, update nodeMaxNumRowEntries_
numEntriesPerRow_[r] = newend - beg;
nodeMaxNumRowEntries_ = std::max( nodeMaxNumRowEntries_, numEntriesPerRow_[r] );
nodeNumEntries_ += numEntriesPerRow_[r];
rview = Teuchos::null;
}
}
noRedundancies_ = true;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::makeImportExport() {
TEST_FOR_EXCEPT(hasColMap()==false); // must have column map
// create import, export
if (!domainMap_->isSameAs(*colMap_)) {
importer_ = Teuchos::rcp( new Import<LocalOrdinal,GlobalOrdinal,Node>(domainMap_,colMap_) );
}
else {
importer_ = Teuchos::null;
}
if (!rangeMap_->isSameAs(*rowMap_)) {
exporter_ = Teuchos::rcp( new Export<LocalOrdinal,GlobalOrdinal,Node>(rowMap_,rangeMap_) );
}
else {
exporter_ = Teuchos::null;
}
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::optimizeStorage() {
using Teuchos::ArrayRCP;
// optimizeStorage will perform two functions:
// 1) create a single allocation of memory
// 2) pack data in that allocation
// if getProfileType() == StaticProfile, then 1) has already been done
//
// post-condition:
// getProfileType() == StaticProfile
// numEntriesPerRow_ == Teuchos::null; size and allocation are the same, compute by subtracting offsets
if (isStorageOptimized() == true) return;
if (indicesAreAllocated() == false) {
// won't ever allocate now
indicesAreAllocated_ = true;
nodeNumAllocated_ = 0;
numAllocPerRow_ = Teuchos::null;
numAllocForAllRows_ = 0;
}
TEST_FOR_EXCEPTION(isFillComplete() == false || isSorted() == false || notRedundant() == false, std::runtime_error,
Teuchos::typeName(*this) << "::optimizeStorage(): fillComplete() must be called before optimizeStorage().");
Teuchos::RCP<Node> node = lclGraph_.getNode();
const size_t nlrs = getNodeNumRows();
if (nlrs > 0 && nodeNumAllocated_ > 0) {
if (getProfileType() == DynamicProfile) {
// any changes in the local indices must be committed before the copyBuffers() calls below
view_lclInds2D_ = Teuchos::null;
// allocate single memory block
pbuf_rowOffsets_ = node->template allocBuffer<size_t>(nlrs+1);
KOKKOS_NODE_TRACE("CrsGraph::optimizeStorage()")
view_rowOffsets_ = node->template viewBufferNonConst<size_t>(Kokkos::WriteOnly,nlrs+1,pbuf_rowOffsets_);
if (nodeNumEntries_ > 0) {
pbuf_lclInds1D_ = node->template allocBuffer<LocalOrdinal>(nodeNumEntries_);
ArrayRCP<LocalOrdinal> curptr = pbuf_lclInds1D_;
size_t sofar = 0;
for (size_t r=0; r<nlrs; ++r) {
const size_t rne = numEntriesPerRow_[r];
if (rne > 0) {
KOKKOS_NODE_TRACE("CrsGraph::optimizeStorage()")
node->template copyBuffers<LocalOrdinal>(rne, pbuf_lclInds2D_[r], curptr);
}
view_rowOffsets_[r] = sofar;
curptr += rne;
sofar += rne;
}
view_rowOffsets_[nlrs] = sofar;
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION( nodeNumEntries_ != sofar, std::logic_error,
Teuchos::typeName(*this) << "::optimizeStorage(): Internal Tpetra logic error. Please contact Tpetra team.");
#endif
}
else {
std::fill(view_rowOffsets_.begin(), view_rowOffsets_.end(), 0);
}
// done with this buffer; we are 1D now
pbuf_lclInds2D_ = Teuchos::null;
}
else { // StaticProfile
// any changes to the local indices must be committed before the copyBuffers() calls below
view_lclInds1D_ = Teuchos::null;
// storage is already allocated; just need to pack
if (nodeNumEntries_ > 0) {
if (view_rowOffsets_ == Teuchos::null) {
KOKKOS_NODE_TRACE("CrsGraph::optimizeStorage()")
view_rowOffsets_ = node->template viewBufferNonConst<size_t>(Kokkos::ReadWrite,nlrs+1,pbuf_rowOffsets_);
}
ArrayRCP<LocalOrdinal> curptr = pbuf_lclInds1D_,
oldptr = pbuf_lclInds1D_;
size_t sofar = 0;
for (size_t r=0; r<nlrs; ++r) {
const size_t rne = numEntriesPerRow_[r],
na = view_rowOffsets_[r+1] - view_rowOffsets_[r];
if (curptr != oldptr) {
KOKKOS_NODE_TRACE("CrsGraph::optimizeStorage()")
node->template copyBuffers<LocalOrdinal>(rne, oldptr, curptr);
view_rowOffsets_[r] = sofar;
}
sofar += rne;
curptr += rne;
oldptr += na;
}
view_rowOffsets_[nlrs] = sofar;
#ifdef HAVE_TPETRA_DEBUG
TEST_FOR_EXCEPTION( nodeNumEntries_ != sofar, std::logic_error,
Teuchos::typeName(*this) << "::optimizeStorage(): Internal Tpetra logic error. Please contact Tpetra team.");
#endif
// resize to num allocated
pbuf_lclInds1D_ = pbuf_lclInds1D_.persistingView(0,sofar);
}
}
nodeNumAllocated_ = nodeNumEntries_;
}
// clear it; this is duplicated now by the row pointers
numEntriesPerRow_ = Teuchos::null;
// if we have no storage, then we don't need this buffer at all
// delete it before clearing the view below, to short-circuit the copy-back
if (nodeNumAllocated_ == 0) {
pbuf_rowOffsets_ = Teuchos::null;
pbuf_lclInds1D_ = Teuchos::null;
}
// this must be cleared before the call to fillLocalGraph()
view_rowOffsets_ = Teuchos::null;
storageOptimized_ = true;
pftype_ = StaticProfile;
checkInternalState();
fillLocalGraph();
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
std::string CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::description() const {
std::ostringstream oss;
oss << DistObject<GlobalOrdinal,LocalOrdinal,GlobalOrdinal,Node>::description();
if (isFillComplete()) {
oss << "{status = fill complete"
<< ", global rows = " << getGlobalNumRows()
<< ", global cols = " << getGlobalNumCols()
<< ", global num entries = " << getGlobalNumEntries()
<< "}";
}
else {
oss << "{status = fill not complete"
<< ", global rows = " << getGlobalNumRows()
<< "}";
}
return oss.str();
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::describe(Teuchos::FancyOStream &out, const Teuchos::EVerbosityLevel verbLevel) const {
using std::endl;
using std::setw;
using Teuchos::VERB_DEFAULT;
using Teuchos::VERB_NONE;
using Teuchos::VERB_LOW;
using Teuchos::VERB_MEDIUM;
using Teuchos::VERB_HIGH;
using Teuchos::VERB_EXTREME;
Teuchos::EVerbosityLevel vl = verbLevel;
if (vl == VERB_DEFAULT) vl = VERB_LOW;
Teuchos::RCP<const Teuchos::Comm<int> > comm = this->getComm();
const int myImageID = comm->getRank(),
numImages = comm->getSize();
size_t width = 1;
for (size_t dec=10; dec<getGlobalNumRows(); dec *= 10) {
++width;
}
width = std::max<size_t>(width,11) + 2;
Teuchos::OSTab tab(out);
// none: print nothing
// low: print O(1) info from node 0
// medium: print O(P) info, num entries per node
// high: print O(N) info, num entries per row
// extreme: print O(NNZ) info: print graph indices
//
// for medium and higher, print constituent objects at specified verbLevel
if (vl != VERB_NONE) {
if (myImageID == 0) out << this->description() << std::endl;
// O(1) globals, minus what was already printed by description()
if (isFillComplete() && myImageID == 0) {
out << "Global number of diagonals = " << globalNumDiags_ << std::endl;
out << "Global max number of entries = " << globalMaxNumRowEntries_ << std::endl;
}
// constituent objects
if (vl == VERB_MEDIUM || vl == VERB_HIGH || vl == VERB_EXTREME) {
if (myImageID == 0) out << "\nRow map: " << std::endl;
rowMap_->describe(out,vl);
if (colMap_ != Teuchos::null) {
if (myImageID == 0) out << "\nColumn map: " << std::endl;
colMap_->describe(out,vl);
}
if (domainMap_ != Teuchos::null) {
if (myImageID == 0) out << "\nDomain map: " << std::endl;
domainMap_->describe(out,vl);
}
if (rangeMap_ != Teuchos::null) {
if (myImageID == 0) out << "\nRange map: " << std::endl;
rangeMap_->describe(out,vl);
}
}
// O(P) data
if (vl == VERB_MEDIUM || vl == VERB_HIGH || vl == VERB_EXTREME) {
for (int imageCtr = 0; imageCtr < numImages; ++imageCtr) {
if (myImageID == imageCtr) {
out << "Node ID = " << imageCtr << std::endl
<< "Node number of entries = " << nodeNumEntries_ << std::endl
<< "Node number of diagonals = " << nodeNumDiags_ << std::endl
<< "Node max number of entries = " << nodeMaxNumRowEntries_ << std::endl;
if (indicesAreAllocated()) {
out << "Node number of allocated entries = " << nodeNumAllocated_ << std::endl;
}
else {
out << "Indices are not allocated." << std::endl;
}
}
comm->barrier();
comm->barrier();
comm->barrier();
}
}
// O(N) and O(NNZ) data
if (vl == VERB_HIGH || vl == VERB_EXTREME) {
for (int imageCtr = 0; imageCtr < numImages; ++imageCtr) {
if (myImageID == imageCtr) {
out << std::setw(width) << "Node ID"
<< std::setw(width) << "Global Row"
<< std::setw(width) << "Num Entries";
if (vl == VERB_EXTREME) {
out << "Entries";
}
out << std::endl;
for (size_t r=0; r < getNodeNumRows(); ++r) {
const size_t nE = RNNZ(r);
GlobalOrdinal gid = rowMap_->getGlobalElement(r);
out << std::setw(width) << myImageID
<< std::setw(width) << gid
<< std::setw(width) << nE;
if (vl == VERB_EXTREME) {
if (isGloballyIndexed()) {
Teuchos::ArrayRCP<const GlobalOrdinal> rowview = getGlobalRowView(gid);
for (size_t j=0; j < nE; ++j) out << rowview[j] << " ";
}
else if (isLocallyIndexed()) {
Teuchos::ArrayRCP<const LocalOrdinal> rowview = getLocalRowView(r);
for (size_t j=0; j < nE; ++j) out << colMap_->getGlobalElement(rowview[j]) << " ";
}
}
out << std::endl;
}
}
comm->barrier();
comm->barrier();
comm->barrier();
}
}
}
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
bool CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::checkSizes(const DistObject<GlobalOrdinal,LocalOrdinal,GlobalOrdinal,Node>& source)
{
// It's not clear what kind of compatibility checks on sizes can be performed here.
// Epetra_CrsGraph doesn't check any sizes for compatibility.
return true;
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::copyAndPermute(
const DistObject<GlobalOrdinal,LocalOrdinal,GlobalOrdinal,Node> & source,
size_t numSameIDs,
const Teuchos::ArrayView<const LocalOrdinal> &permuteToLIDs,
const Teuchos::ArrayView<const LocalOrdinal> &permuteFromLIDs)
{
const CrsGraph<LocalOrdinal,GlobalOrdinal,Node>& src_graph = dynamic_cast<const CrsGraph<LocalOrdinal,GlobalOrdinal,Node>&>(source);
TEST_FOR_EXCEPTION(permuteToLIDs.size() != permuteFromLIDs.size(), std::runtime_error,
Teuchos::typeName(*this) << "::copyAndPermute: permuteToLIDs and permuteFromLIDs must have the same size.");
bool src_filled = src_graph.isFillComplete();
Teuchos::Array<GlobalOrdinal> row_copy;
LocalOrdinal myid = 0;
for (size_t i=0; i<numSameIDs; ++i, ++myid) {
GlobalOrdinal gid = src_graph.getMap()->getGlobalElement(myid);
if (src_filled) {
size_t row_length = src_graph.getNumEntriesInGlobalRow(gid);
row_copy.resize(row_length);
size_t check_row_length = 0;
src_graph.getGlobalRowCopy(gid, row_copy(), check_row_length);
insertGlobalIndices( gid, row_copy() );
}
else {
Teuchos::ArrayRCP<const GlobalOrdinal> row = src_graph.getGlobalRowView(gid);
insertGlobalIndices( gid, row() );
}
}
for (LocalOrdinal i=0; i<permuteToLIDs.size(); ++i) {
GlobalOrdinal mygid = this->getMap()->getGlobalElement(permuteToLIDs[i]);
GlobalOrdinal srcgid= src_graph.getMap()->getGlobalElement(permuteFromLIDs[i]);
if (src_filled) {
size_t row_length = src_graph.getNumEntriesInGlobalRow(srcgid);
row_copy.resize(row_length);
size_t check_row_length = 0;
src_graph.getGlobalRowCopy(srcgid, row_copy(), check_row_length);
insertGlobalIndices( mygid, row_copy() );
}
else {
Teuchos::ArrayRCP<const GlobalOrdinal> row = src_graph.getGlobalRowView(srcgid);
insertGlobalIndices( mygid, row() );
}
}
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::packAndPrepare(
const DistObject<GlobalOrdinal,LocalOrdinal,GlobalOrdinal,Node> & source,
const Teuchos::ArrayView<const LocalOrdinal> &exportLIDs,
Teuchos::Array<GlobalOrdinal> &exports,
const Teuchos::ArrayView<size_t> & numPacketsPerLID,
size_t& constantNumPackets,
Distributor &distor)
{
TEST_FOR_EXCEPTION(exportLIDs.size() != numPacketsPerLID.size(), std::runtime_error,
Teuchos::typeName(*this) << "::packAndPrepare: exportLIDs and numPacketsPerLID must have the same size.");
const CrsGraph<LocalOrdinal,GlobalOrdinal,Node>& src_graph = dynamic_cast<const CrsGraph<LocalOrdinal,GlobalOrdinal,Node>&>(source);
// We don't check whether src_graph has had fillComplete called, because it doesn't matter whether the
// *source* graph has been fillComplete'd. The target graph can not be fillComplete'd yet.
TEST_FOR_EXCEPTION(this->isFillComplete() == true, std::runtime_error,
Teuchos::typeName(*this) << "::copyAndPermute: import/export operations are not allowed on destination CrsGraph after fillComplete has been called.");
constantNumPackets = 0;
// first set the contents of numPacketsPerLID, and accumulate a total-num-packets:
size_t totalNumPackets = 0;
Teuchos::Array<GlobalOrdinal> row;
for (LocalOrdinal i=0; i<exportLIDs.size(); ++i) {
GlobalOrdinal GID = src_graph.getMap()->getGlobalElement(exportLIDs[i]);
size_t row_length = src_graph.getNumEntriesInGlobalRow(GID);
numPacketsPerLID[i] = row_length;
totalNumPackets += row_length;
}
exports.resize(totalNumPackets);
// now loop again and pack rows of indices into exports:
size_t exportsOffset = 0;
for (LocalOrdinal i=0; i<exportLIDs.size(); ++i) {
GlobalOrdinal GID = src_graph.getMap()->getGlobalElement(exportLIDs[i]);
size_t row_length = src_graph.getNumEntriesInGlobalRow(GID);
row.resize(row_length);
size_t check_row_length = 0;
src_graph.getGlobalRowCopy(GID, row(), check_row_length);
typename Teuchos::Array<GlobalOrdinal>::const_iterator
row_iter = row.begin(), row_end = row.end();
size_t j = 0;
for (; row_iter != row_end; ++row_iter, ++j) {
exports[exportsOffset+j] = *row_iter;
}
exportsOffset += row.size();
}
}
/////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////////////////////////
template <class LocalOrdinal, class GlobalOrdinal, class Node>
void CrsGraph<LocalOrdinal,GlobalOrdinal,Node>::unpackAndCombine(
const Teuchos::ArrayView<const LocalOrdinal> &importLIDs,
const Teuchos::ArrayView<const GlobalOrdinal> &imports,
const Teuchos::ArrayView<size_t> &numPacketsPerLID,
size_t constantNumPackets,
Distributor & /* distor */,
CombineMode /* CM */)
{
// We are not checking the value of the CombineMode input-argument.
// For CrsGraph, we only support import/export operations if fillComplete has not yet been called.
// Any incoming column-indices are inserted into the target graph. In this context, CombineMode values
// of ADD vs INSERT are equivalent. What is the meaning of REPLACE for CrsGraph? If a duplicate column-index
// is inserted, it will be compressed out when fillComplete is called.
//
// Note: I think REPLACE means that an existing row is replaced by the imported row, i.e., the existing indices are cleared. CGB, 6/17/2010
TEST_FOR_EXCEPTION(importLIDs.size() != numPacketsPerLID.size(), std::runtime_error,
Teuchos::typeName(*this) << "::unpackAndCombine: importLIDs and numPacketsPerLID must have the same size.");
TEST_FOR_EXCEPTION(this->isFillComplete() == true, std::runtime_error,
Teuchos::typeName(*this) << "::unpackAndCombine: import/export operations are not allowed on destination CrsGraph after fillComplete has been called.");
size_t importsOffset = 0;
typename Teuchos::ArrayView<const LocalOrdinal>::iterator
impLIDiter = importLIDs.begin(), impLIDend = importLIDs.end();
size_t i = 0;
for (; impLIDiter != impLIDend; ++impLIDiter, ++i) {
LocalOrdinal row_length = numPacketsPerLID[i];
const Teuchos::ArrayView<const GlobalOrdinal> row(&imports[importsOffset], row_length);
insertGlobalIndices(this->getMap()->getGlobalElement(*impLIDiter), row);
importsOffset += row_length;
}
}
} // namespace Tpetra
//
// Explicit instantiation macro
//
// Must be expanded from within the Tpetra namespace!
//
#define TPETRA_CRSGRAPH_INSTANT(LO,GO,NODE) \
\
template class CrsGraph< LO , GO , NODE >; \
#endif // TPETRA_CRSGRAPH_DEF_HPP
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