This file is indexed.

/usr/include/trilinos/TMPQualityMetric.hpp is in libtrilinos-dev 10.4.0.dfsg-1ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
/* ***************************************************************** 
    MESQUITE -- The Mesh Quality Improvement Toolkit

    Copyright 2006 Sandia National Laboratories.  Developed at the
    University of Wisconsin--Madison under SNL contract number
    624796.  The U.S. Government and the University of Wisconsin
    retain certain rights to this software.

    This library is free software; you can redistribute it and/or
    modify it under the terms of the GNU Lesser General Public
    License as published by the Free Software Foundation; either
    version 2.1 of the License, or (at your option) any later version.

    This library is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
    Lesser General Public License for more details.

    You should have received a copy of the GNU Lesser General Public License 
    (lgpl.txt) along with this library; if not, write to the Free Software
    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 
    (2006) kraftche@cae.wisc.edu
   
  ***************************************************************** */


/** \file TMPQualityMetric.hpp
 *  \brief 
 *  \author Jason Kraftcheck 
 */

#ifndef MSQ_JACOBIAN_METRIC_HPP
#define MSQ_JACOBIAN_METRIC_HPP

#include "Mesquite.hpp"
#include "ElemSampleQM.hpp"
#include "MsqMatrix.hpp"

namespace MESQUITE_NS {

class TargetCalculator;
class WeightCalculator;
class TargetMetric2D;
class TargetMetric3D;
class NodeSet;
class Mesh;
class MeshDomain;
class Settings;

/**\brief Compare targets to mapping function Jacobian matrices
 *
 * A quality metric defined using 2D and 3D target metrics,
 * where the active (A) matrix compared to the target by
 * the underlying metrics is the Jacobian matrix of the
 * mapping function at a given sample point.  For surface
 * elements, A is rotated to align the normal with W, such that
 * both matrices can be reduced from 3x2 to 2x2.
 */
class TMPQualityMetric : public ElemSampleQM
{
public:

  /**
   *\param tc   The target calculator 
   *\param wc   The weight calculator
   *\param metric_2d Metric to use for surface elements - may be NULL
   *            if mesh contains only volume elements.
   *\param metric_3d Metric to use for volume elements - may be NULL
   *            if mesh contains only surface elements.
   */
  TMPQualityMetric( TargetCalculator* tc,
                    WeightCalculator* wc,
                    TargetMetric2D* metric_2d,
                    TargetMetric3D* metric_3d ) 
    : targetCalc(tc),
      weightCalc(wc),
      metric2D( metric_2d ),
      metric3D( metric_3d )
   {}

  /**
   *\param tc   The target calculator 
   *\param metric_2d Metric to use for surface elements - may be NULL
   *            if mesh contains only volume elements.
   *\param metric_3d Metric to use for volume elements - may be NULL
   *            if mesh contains only surface elements.
   */
  TMPQualityMetric( TargetCalculator* tc,
                    TargetMetric2D* metric_2d,
                    TargetMetric3D* metric_3d ) 
    : targetCalc(tc),
      weightCalc(0),
      metric2D( metric_2d ),
      metric3D( metric_3d )
   {}
     
  MESQUITE_EXPORT virtual
  std::string get_name() const;
  
  MESQUITE_EXPORT virtual 
  int get_negate_flag() const;
  
  MESQUITE_EXPORT virtual
  void get_evaluations( PatchData& pd, 
                        std::vector<size_t>& handles, 
                        bool free_vertices_only,
                        MsqError& err );
  
  MESQUITE_EXPORT static
  void get_patch_evaluations( PatchData& pd, 
                        std::vector<size_t>& handles, 
                        bool free_vertices_only,
                        MsqError& err );
  
  MESQUITE_EXPORT virtual 
  void get_element_evaluations( PatchData& pd, size_t elem_index,
                                std::vector<size_t>& handles,
                                MsqError& err );
  
  MESQUITE_EXPORT virtual
  bool evaluate( PatchData& pd, 
                 size_t handle, 
                 double& value, 
                 MsqError& err );

  MESQUITE_EXPORT virtual
  bool evaluate_with_indices( PatchData& pd,
                 size_t handle,
                 double& value,
                 std::vector<size_t>& indices,
                 MsqError& err );
                 
  MESQUITE_EXPORT virtual
  bool evaluate_with_gradient( PatchData& pd,
                 size_t handle,
                 double& value,
                 std::vector<size_t>& indices,
                 std::vector<Vector3D>& gradient,
                 MsqError& err );

  MESQUITE_EXPORT virtual
  bool evaluate_with_Hessian_diagonal( PatchData& pd,
                    size_t handle,
                    double& value,
                    std::vector<size_t>& indices,
                    std::vector<Vector3D>& gradient,
                    std::vector<SymMatrix3D>& Hessian_diagonal,
                    MsqError& err );
                    
  MESQUITE_EXPORT virtual
  bool evaluate_with_Hessian( PatchData& pd,
                    size_t handle,
                    double& value,
                    std::vector<size_t>& indices,
                    std::vector<Vector3D>& gradient,
                    std::vector<Matrix3D>& Hessian,
                    MsqError& err );
    
  void set_target_calculator( TargetCalculator* tc ) { targetCalc = tc; }
  void set_weight_calculator( WeightCalculator* wc ) { weightCalc = wc; }
  TargetCalculator* get_target_calculator() const { return targetCalc; }
  WeightCalculator* get_weight_calculator() const { return weightCalc; }
  
  TargetMetric2D* get_2d_metric() const { return metric2D; }
  TargetMetric3D* get_3d_metric() const { return metric3D; }
  void set_2d_metric( TargetMetric2D* m ) { metric2D = m; }
  void set_3d_metric( TargetMetric3D* m ) { metric3D = m; }
    
  virtual void initialize_queue( Mesh* mesh,
                                 MeshDomain* domain,
                                 Settings* settings,
                                 MsqError& err );
  
private:

  bool evaluate_with_indices( PatchData& pd,
                 size_t handle,
                 double& value,
                 size_t* indices,
                 size_t& num_indices,
                 MsqError& err );

  bool evaluate_surface_common( // input:
                                PatchData& pd,
                                Sample sample,
                                size_t element_index,
                                const NodeSet& bits,
                                // output:
                                size_t* indices, 
                                size_t& num_indices,
                                MsqVector<2>* derivs,
                                MsqMatrix<2,2>& W,
                                MsqMatrix<2,2>& A,
                                MsqMatrix<3,2>& S_a_transpose_Theta,
                                MsqError& err );
                                

  TargetCalculator* targetCalc;
  WeightCalculator* weightCalc;
  TargetMetric2D* metric2D;
  TargetMetric3D* metric3D;
  
  enum { MAX_ELEM_NODES = 27 };
  size_t mIndices[MAX_ELEM_NODES];
  std::vector< MsqMatrix<2,2> > hess2d;
  MsqVector<3> mDerivs3D[MAX_ELEM_NODES];
  MsqVector<2> mDerivs2D[MAX_ELEM_NODES];
};

} // namespace Mesquite

#endif