This file is indexed.

/usr/include/trilinos/Sacado_CacheFad_SFad.hpp is in libtrilinos-dev 10.4.0.dfsg-1ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
// $Id$ 
// $Source$ 
// @HEADER
// ***********************************************************************
// 
//                           Sacado Package
//                 Copyright (2006) Sandia Corporation
// 
// Under the terms of Contract DE-AC04-94AL85000 with Sandia Corporation,
// the U.S. Government retains certain rights in this software.
// 
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//  
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//  
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
// USA
// Questions? Contact David M. Gay (dmgay@sandia.gov) or Eric T. Phipps
// (etphipp@sandia.gov).
// 
// ***********************************************************************
//
// The forward-mode AD classes in Sacado are a derivative work of the
// expression template classes in the Fad package by Nicolas Di Cesare.  
// The following banner is included in the original Fad source code:
//
// ************ DO NOT REMOVE THIS BANNER ****************
//
//  Nicolas Di Cesare <Nicolas.Dicesare@ann.jussieu.fr>
//  http://www.ann.jussieu.fr/~dicesare
//
//            CEMRACS 98 : C++ courses, 
//         templates : new C++ techniques 
//            for scientific computing 
// 
//********************************************************
//
//  A short implementation ( not all operators and 
//  functions are overloaded ) of 1st order Automatic
//  Differentiation in forward mode (FAD) using
//  EXPRESSION TEMPLATES.
//
//********************************************************
// @HEADER

#ifndef SACADO_CACHEFAD_SFAD_HPP
#define SACADO_CACHEFAD_SFAD_HPP

#include "Sacado_CacheFad_SFadTraits.hpp"
#include "Sacado_CacheFad_Expression.hpp"
#include "Sacado_StaticArrayTraits.hpp"
#include "Sacado_dummy_arg.hpp"

namespace Sacado {

  //! Namespace for forward-mode AD classes
  namespace CacheFad {

    //! A tag for specializing Expr for SFad expressions
    template <typename T, int Num> 
    struct SFadExprTag {};

    /*!
     * \brief Expression template forward-mode AD class with static memory
     * allocation.
     */
    /*!
     * This classes specializes Expr to SFad expressions.
     */
    template <typename T, int Num> 
    class Expr< SFadExprTag<T,Num> > {

    public:

      //! Typename of values
      typedef T value_type;

      //! Typename of scalar's (which may be different from T)
      typedef typename ScalarType<T>::type scalar_type;

      /*!
       * @name Initialization methods
       */
      //@{

      //! Default constructor
      Expr() : val_( T(0.)) { ss_array<T>::zero(dx_, Num); }

      //! Constructor with supplied value \c x
      /*!
       * Initializes value to \c x and derivative array is empty
       */
      Expr(const T & x) : val_(x)  { ss_array<T>::zero(dx_, Num); }

      //! Constructor with size \c sz and value \c x
      /*!
       * Initializes value to \c x and derivative array 0 of length \c sz
       */
      Expr(const int sz, const T & x);

      //! Constructor with size \c sz, index \c i, and value \c x
      /*!
       * Initializes value to \c x and derivative array of length \c sz
       * as row \c i of the identity matrix, i.e., sets derivative component
       * \c i to 1 and all other's to zero.
       */
      Expr(const int sz, const int i, const T & x);

      //! Copy constructor
      Expr(const Expr& x);

      //! Copy constructor from any Expression object
      template <typename S> Expr(const Expr<S>& x);

      //! Destructor
      ~Expr() {}

      //! Set %Fad object as the \c ith independent variable
      /*!
       * Sets the derivative array of length \c n to the \c ith row of the
       * identity matrix and has the same affect as the 
       * Implementation(const int sz, const int i, const T & x) 
       * constructor.
       */
      void diff(const int ith, const int n);

      //! Resize derivative array to length \c sz
      /*!
       * Since the derivative array length is not dynamic, this method
       * throws an error if compiled with SACADO_DEBUG defined.
       */
      void resize(int sz);

      //! Zero out the derivative array
      void zero() { ss_array<T>::zero(dx_, Num); }

      //@}

      /*!
       * @name Value accessor methods
       */
      //@{

      //! Returns value
      const T& val() const { return val_;}

      //! Returns value
      T& val() { return val_;}

      //@}

      /*!
       * @name Derivative accessor methods
       */
      //@{

      //! Returns number of derivative components
      int size() const { return Num;}

      /*! 
       * \brief Returns number of derivative components that can be stored 
       * without reallocation
       */
      int availableSize() const { return Num; }

      //! Returns true if derivative array is not empty
      bool hasFastAccess() const { return true; }

      //! Returns true if derivative array is empty
      bool isPassive() const { return false; }
      
      //! Set whether variable is constant
      void setIsConstant(bool is_const) {}

      //! Returns derivative array
      const T* dx() const { return &(dx_[0]);}

      //! Returns derivative component \c i with bounds checking
      const T& dx(int i) const { return dx_[i]; }
    
      //! Returns derivative component \c i without bounds checking
      T& fastAccessDx(int i) { return dx_[i];}

      //! Returns derivative component \c i without bounds checking
      const T& fastAccessDx(int i) const { return dx_[i];}
    
      //@}

      /*!
       * @name Assignment operators
       */
      //@{

      //! Assignment operator with constant right-hand-side
      Expr< SFadExprTag<T,Num> >& operator=(const T& val);

      //! Assignment with Expr right-hand-side
      Expr< SFadExprTag<T,Num> >& 
      operator=(const Expr< SFadExprTag<T,Num> >& x);

      //! Assignment operator with any expression right-hand-side
      template <typename S> 
      Expr< SFadExprTag<T,Num> >& operator=(const Expr<S>& x); 

      //@}

      /*!
       * @name Unary operators
       */
      //@{

      //! Addition-assignment operator with constant right-hand-side
      Expr< SFadExprTag<T,Num> >& operator += (const T& x);

      //! Subtraction-assignment operator with constant right-hand-side
      Expr< SFadExprTag<T,Num> >& operator -= (const T& x);

      //! Multiplication-assignment operator with constant right-hand-side
      Expr< SFadExprTag<T,Num> >& operator *= (const T& x);

      //! Division-assignment operator with constant right-hand-side
      Expr< SFadExprTag<T,Num> >& operator /= (const T& x);

      //! Addition-assignment operator with Expr right-hand-side
      template <typename S> 
      Expr< SFadExprTag<T,Num> >& operator += (const Expr<S>& x);

      //! Subtraction-assignment operator with Expr right-hand-side
      template <typename S> 
      Expr< SFadExprTag<T,Num> >& operator -= (const Expr<S>& x);
  
      //! Multiplication-assignment operator with Expr right-hand-side
      template <typename S> 
      Expr< SFadExprTag<T,Num> >& operator *= (const Expr<S>& x);

      //! Division-assignment operator with Expr right-hand-side
      template <typename S> 
      Expr< SFadExprTag<T,Num> >& operator /= (const Expr<S>& x);

      //@}

    protected:

      //! Value
      T val_;

      //! Derivatives
      T dx_[Num];

    }; // class Expr<SFadExprTag>

    /*!
     * \brief Forward-mode AD class using static memory allocation and
     * caching expression templates.
     */
    /*!
     * This is the user-level class for forward mode AD with static
     * memory allocation, and is appropriate for whenever the number
     * of derivative components is known at compile time.  The size
     * of the derivative array is fixed by the template parameter \c Num.  
     * It is similar to Sacado::Fad::SFad, except it uses the 
     * caching expression templates that cache the results of val() 
     * calculations for later dx() calculations.
     */
    template <typename ValueT, int Num>
    class SFad : 
      public Expr< SFadExprTag<ValueT,Num > > {

    public:

      //! Typename of scalar's (which may be different from ValueT)
      typedef typename ScalarType<ValueT>::type ScalarT;

      //! Turn SFad into a meta-function class usable with mpl::apply
      template <typename T> 
      struct apply {
	typedef SFad<T,Num> type;
      };

      /*!
       * @name Initialization methods
       */
      //@{

      //! Default constructor.
      /*!
       * Initializes value to 0 and derivative array is empty
       */
      SFad() : 
	Expr< SFadExprTag< ValueT,Num > >() {}

      //! Constructor with supplied value \c x
      /*!
       * Initializes value to \c x and derivative array is empty
       */
      SFad(const ValueT & x) : 
	Expr< SFadExprTag< ValueT,Num > >(x) {}

      //! Constructor with supplied value \c x of type ScalarT
      /*!
       * Initializes value to \c ValueT(x) and derivative array is empty.
       * Creates a dummy overload when ValueT and ScalarT are the same type.
       */
      SFad(const typename dummy<ValueT,ScalarT>::type& x) : 
	Expr< SFadExprTag< ValueT,Num > >(ValueT(x)) {}

      //! Constructor with size \c sz and value \c x
      /*!
       * Initializes value to \c x and derivative array 0 of length \c sz
       */
      SFad(const int sz, const ValueT & x) : 
	Expr< SFadExprTag< ValueT,Num > >(sz,x) {}

      //! Constructor with size \c sz, index \c i, and value \c x
      /*!
       * Initializes value to \c x and derivative array of length \c sz
       * as row \c i of the identity matrix, i.e., sets derivative component
       * \c i to 1 and all other's to zero.
       */
      SFad(const int sz, const int i, const ValueT & x) : 
	Expr< SFadExprTag< ValueT,Num > >(sz,i,x) {}

      //! Copy constructor
      SFad(const SFad& x) : 
	Expr< SFadExprTag< ValueT,Num > >(x) {}

      //! Copy constructor from any Expression object
      template <typename S> SFad(const Expr<S>& x) : 
	Expr< SFadExprTag< ValueT,Num > >(x) {}

      //@}

      //! Destructor
      ~SFad() {}

      //! Assignment operator with constant right-hand-side
      SFad& operator=(const ValueT& v) {
	Expr< SFadExprTag< ValueT,Num > >::operator=(v);
	return *this;
      }

      //! Assignment operator with constant right-hand-side
      /*!
       * Creates a dummy overload when ValueT and ScalarT are the same type.
       */
      SFad& operator=(const typename dummy<ValueT,ScalarT>::type& v) {
	Expr< SFadExprTag< ValueT,Num > >::operator=(ValueT(v));
	return *this;
      }

      //! Assignment operator with DFad right-hand-side
      SFad& operator=(const SFad& x) {
	Expr< SFadExprTag< ValueT,Num > >::operator=(static_cast<const Expr< SFadExprTag< ValueT,Num > >&>(x));
	return *this;
      }

      //! Assignment operator with any expression right-hand-side
      template <typename S> SFad& operator=(const Expr<S>& x) 
      {
	Expr< SFadExprTag< ValueT,Num > >::operator=(x);
	return *this;
      }

    }; // class SFad<ValueT,Num>

  } // namespace CacheFad

} // namespace Sacado

#include "Sacado_CacheFad_SFadImp.hpp"
#include "Sacado_CacheFad_Ops.hpp"

#endif // SACADO_CACHEFAD_SFAD_HPP