This file is indexed.

/usr/include/trilinos/DenseLinAlgPack_LinAlgOpPackDef.hpp is in libtrilinos-dev 10.4.0.dfsg-1ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
// @HEADER
// ***********************************************************************
// 
// Moocho: Multi-functional Object-Oriented arCHitecture for Optimization
//                  Copyright (2003) Sandia Corporation
// 
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
// 
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//  
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//  
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
// USA
// Questions? Contact Roscoe A. Bartlett (rabartl@sandia.gov) 
// 
// ***********************************************************************
// @HEADER

#ifndef LIN_ALG_OP_PACK_DEF_H
#define LIN_ALG_OP_PACK_DEF_H

#include "DenseLinAlgPack_LinAlgOpPackDecl.hpp"	// also includes some inline function definitions
#include "DenseLinAlgPack_AssertOp.hpp"
#include "DenseLinAlgPack_DMatrixClass.hpp"

namespace LinAlgOpPack {

using BLAS_Cpp::rows;
using BLAS_Cpp::cols;

// Inject assert functions
using DenseLinAlgPack::assert_gms_lhs;
using DenseLinAlgPack::Vp_V_assert_sizes;
using DenseLinAlgPack::VopV_assert_sizes;
using DenseLinAlgPack::Mp_M_assert_sizes;
using DenseLinAlgPack::MopM_assert_sizes;
using DenseLinAlgPack::Vp_MtV_assert_sizes;
using DenseLinAlgPack::MtV_assert_sizes;
using DenseLinAlgPack::MtM_assert_sizes;

// Inject names of base linear algebra functions for DenseLinAlgPack.
// Note that this is neccesary in MS VC++ 5.0 because
// it does not perform name lookups properly but it
// is not adverse to the standard so it is a portable
// fix.
using DenseLinAlgPack::assign;
using DenseLinAlgPack::Vt_S;
using DenseLinAlgPack::Vp_StV;
using DenseLinAlgPack::Vp_StMtV;
using DenseLinAlgPack::Mt_S;
using DenseLinAlgPack::Mp_StM;
using DenseLinAlgPack::Mp_StMtM;

// ///////////////////////////////////////////////////////////////////////////////
// ///////////////////////////////////////////////////////////////////////////////
// Level 1 BLAS for Vectors

// //////////////////////////////////////////////////////////////////////////////
// += operations 

// //////////////////////////////////////////////////////////////////////////////
// operations with DVector as lhs

// v_lhs = V_rhs.
template <class V>
void assign(DVector* v_lhs, const V& V_rhs) {
  v_lhs->resize(V_rhs.dim());
  (*v_lhs) = 0.0;
  Vp_V(&(*v_lhs)(),V_rhs);
}

// v_lhs = alpha * V_rhs.
template <class V>
void V_StV(DVector* v_lhs, value_type alpha, const V& V_rhs) {
  v_lhs->resize(V_rhs.dim());
  (*v_lhs) = 0.0;
  Vp_StV(&(*v_lhs)(),alpha,V_rhs);
}

// v_lhs = V1_rhs1 + V2_rhs2.
template <class V1, class V2>
void V_VpV(DVector* v_lhs, const V1& V1_rhs1, const V2& V2_rhs2) {
  VopV_assert_sizes(V1_rhs1.dim(),V2_rhs2.dim());
  v_lhs->resize(V1_rhs1.dim());
  (*v_lhs) = 0.0;
  DVectorSlice vs_lhs(*v_lhs);
  Vp_V(&vs_lhs,V1_rhs1);
  Vp_V(&vs_lhs,V2_rhs2);
}


// v_lhs = V_rhs1 - V_rhs2.
template <class V1, class V2>
void V_VmV(DVector* v_lhs, const V1& V1_rhs1, const V2& V2_rhs2) {
  VopV_assert_sizes(V1_rhs1.dim(),V2_rhs2.dim());
  v_lhs->resize(V1_rhs1.dim());
  (*v_lhs) = 0.0;
  DVectorSlice vs_lhs(*v_lhs);
  Vp_V(&vs_lhs,V1_rhs1);
  Vp_StV(&vs_lhs,-1.0,V2_rhs2);
}


// v_lhs = alpha * V_rhs1 + vs_rhs2.
template <class V>
void V_StVpV(DVector* v_lhs, value_type alpha, const V& V_rhs1
  , const DVectorSlice& vs_rhs2)
{
  VopV_assert_sizes(V_rhs1.dim(),vs_rhs2.dim());
  (*v_lhs) = vs_rhs2;
  Vp_StV(&(*v_lhs)(),alpha,V_rhs1);
}

// ///////////////////////////////////////////////////////////////////////////
// operations with DVectorSlice as lhs

// vs_lhs = V_rhs.
template <class V>
void assign(DVectorSlice* vs_lhs, const V& V_rhs) {
  Vp_V_assert_sizes( vs_lhs->dim(), V_rhs.dim() );
  (*vs_lhs) = 0.0;
  Vp_V(vs_lhs,V_rhs);
}

// vs_lhs = alpha * V_rhs.
template <class V>
void V_StV(DVectorSlice* vs_lhs, value_type alpha, const V& V_rhs) {
  Vp_V_assert_sizes( vs_lhs->dim(), V_rhs.dim() );
  (*vs_lhs) = 0.0;
  Vp_StV(vs_lhs,alpha,V_rhs);
}

// vs_lhs = V1_rhs1 + V2_rhs2.
template <class V1, class V2>
void V_VpV(DVectorSlice* vs_lhs, const V1& V1_rhs1, const V2& V2_rhs2) {
  VopV_assert_sizes(V1_rhs1.dim(),V2_rhs2.dim());
  Vp_V_assert_sizes( vs_lhs->dim(), V1_rhs1.dim() );
  (*vs_lhs) = 0.0;
  Vp_V(vs_lhs,V1_rhs1);
  Vp_V(vs_lhs,V2_rhs2);
}

// vs_lhs = V_rhs1 - V_rhs2.
template <class V1, class V2>
void V_VmV(DVectorSlice* vs_lhs, const V1& V1_rhs1, const V2& V2_rhs2) {
  VopV_assert_sizes(V1_rhs1.dim(),V2_rhs2.dim());
  Vp_V_assert_sizes( vs_lhs->dim(), V1_rhs1.dim() );
  (*vs_lhs) = 0.0;
  Vp_V(vs_lhs,V1_rhs1);
  Vp_StV(vs_lhs,-1.0,V2_rhs2);
}

// vs_lhs = alpha * V_rhs1 + vs_rhs2.
template <class V>
void V_StVpV(DVectorSlice* vs_lhs, value_type alpha, const V& V_rhs1
  , const DVectorSlice& vs_rhs2)
{
  VopV_assert_sizes(V_rhs1.dim(),vs_rhs2.dim());
  (*vs_lhs) = vs_rhs2;
  Vp_StV(vs_lhs,alpha,V_rhs1);
}

// //////////////////////////////////////////////////////////////////////////////
// ///////////////////////////////////////////////////////////////////////////////
// Level 1 BLAS for Matrices

// //////////////////////////////////////////////////////////////////////////////
// += operations 


// //////////////////////////////////////////////////////////////////////////////
// operations with DMatrix as lhs

// gm_lhs = op(M_rhs).
template <class M>
void assign(DMatrix* gm_lhs, const M& M_rhs, BLAS_Cpp::Transp trans_rhs) {
  gm_lhs->resize(	 rows(M_rhs.rows(),M_rhs.cols(),trans_rhs)
          ,cols(M_rhs.rows(),M_rhs.cols(),trans_rhs) );
  (*gm_lhs) = 0.0;
  Mp_StM(&(*gm_lhs)(),1.0,M_rhs,trans_rhs);
}

// gm_lhs = alpha * op(M_rhs).
template <class M>
void M_StM(DMatrix* gm_lhs, value_type alpha, const M& M_rhs, BLAS_Cpp::Transp trans_rhs) {
  gm_lhs->resize(	 rows(M_rhs.rows(),M_rhs.cols(),trans_rhs)
          ,cols(M_rhs.rows(),M_rhs.cols(),trans_rhs) );
  (*gm_lhs) = 0.0;
  Mp_StM(&(*gm_lhs)(),alpha,M_rhs,trans_rhs);
}

// gm_lhs = op(M1_rhs1) + op(M2_rhs2).
template <class M1, class M2>
void M_MpM(DMatrix* gm_lhs, const M1& M1_rhs1, BLAS_Cpp::Transp trans_rhs1
  , const M2& M2_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MopM_assert_sizes(	 M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1
            ,M2_rhs2.rows(),M2_rhs2.cols(),trans_rhs2 );
  gm_lhs->resize(	 rows(M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1)
          ,cols(M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs2) );
  (*gm_lhs) = 0.0;
  DMatrixSlice gms_lhs(*gm_lhs);
  Mp_M(&gms_lhs,M1_rhs1,trans_rhs1);
  Mp_M(&gms_lhs,M2_rhs2,trans_rhs2);
}

// gm_lhs = op(M_rhs1) - op(M_rhs2).
template <class M1, class M2>
void M_MmM(DMatrix* gm_lhs, const M1& M1_rhs1, BLAS_Cpp::Transp trans_rhs1
  , const M2& M2_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MopM_assert_sizes(	 M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1
            ,M2_rhs2.rows(),M2_rhs2.cols(),trans_rhs2 );
  gm_lhs->resize(	 rows(M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1)
          ,cols(M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1) );
  (*gm_lhs) = 0.0;
  DMatrixSlice gms_lhs(*gm_lhs);
  Mp_M(&gms_lhs,M1_rhs1,trans_rhs1);
  Mp_StM(&gms_lhs,-1.0,M2_rhs2,trans_rhs2);
}

// gm_lhs = alpha * op(M_rhs1) + op(gms_rhs2).
template <class M>
void M_StMpM(DMatrix* gm_lhs, value_type alpha, const M& M_rhs1, BLAS_Cpp::Transp trans_rhs1
  , const DMatrixSlice& gms_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MopM_assert_sizes(	 M_rhs1.rows(),M_rhs1.cols(),trans_rhs1
            ,gms_rhs2.rows(),gms_rhs2.cols(),trans_rhs2);
  assign(gm_lhs,gms_rhs2,trans_rhs2);
  Mp_StM(&(*gm_lhs)(),alpha,M_rhs1,trans_rhs1);
}

// //////////////////////////////////////////////////////////////////////////////
// operations with DMatrixSlice as lhs

// gms_lhs = op(M_rhs).
template <class M>
void assign(DMatrixSlice* gms_lhs, const M& M_rhs, BLAS_Cpp::Transp trans_rhs) {
  Mp_M_assert_sizes(gms_lhs->rows(), gms_lhs->cols(), BLAS_Cpp::no_trans
    , M_rhs.rows(), M_rhs.cols(), trans_rhs	);
  (*gms_lhs) = 0.0;
  Mp_StM(gms_lhs,1.0,M_rhs,trans_rhs);
}

// gms_lhs = alpha * op(M_rhs).
template <class M>
void M_StM(DMatrixSlice* gms_lhs, value_type alpha, const M& M_rhs, BLAS_Cpp::Transp trans_rhs) {
  Mp_M_assert_sizes(gms_lhs->rows(), gms_lhs->cols(), BLAS_Cpp::no_trans
    , M_rhs.rows(), M_rhs.cols(), trans_rhs	);
  (*gms_lhs) = 0.0;
  Mp_StM(gms_lhs,alpha,M_rhs,trans_rhs);
}

// gms_lhs = op(M1_rhs1) + op(M2_rhs2).
template <class M1, class M2>
void M_MpM(DMatrixSlice* gms_lhs, const M1& M1_rhs1, BLAS_Cpp::Transp trans_rhs1
  , const M2& M2_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MopM_assert_sizes(	 M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1
            ,M2_rhs2.rows(),M2_rhs2.cols(),trans_rhs2 );
  assert_gms_lhs(*gms_lhs, rows(M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1)
               , cols(M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1) );
  (*gms_lhs) = 0.0;
  Mp_M(gms_lhs,M1_rhs1,trans_rhs1);
  Mp_M(gms_lhs,M2_rhs2,trans_rhs2);
}

// gms_lhs = op(M_rhs1) - op(M_rhs2).
template <class M1, class M2>
void M_MmM(DMatrixSlice* gms_lhs, const M1& M1_rhs1, BLAS_Cpp::Transp trans_rhs1
  , const M2& M2_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MopM_assert_sizes(	 M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1
            ,M2_rhs2.rows(),M2_rhs2.cols(),trans_rhs2 );
  assert_gms_lhs(*gms_lhs, rows(M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1)
               , cols(M1_rhs1.rows(),M1_rhs1.cols(),trans_rhs1) );
  (*gms_lhs) = 0.0;
  Mp_M(gms_lhs,M1_rhs1,trans_rhs1);
  Mp_StM(gms_lhs,-1.0,M2_rhs2,trans_rhs2);
}

// gms_lhs = alpha * op(M_rhs1) + op(gms_rhs2).
template <class M>
void M_StMpM(DMatrixSlice* gms_lhs, value_type alpha, const M& M_rhs1, BLAS_Cpp::Transp trans_rhs1
  , const DMatrixSlice& gms_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MopM_assert_sizes(	 M_rhs1.rows(),M_rhs1.cols(),trans_rhs1
            ,gms_rhs2.rows(),gms_rhs2.cols(),trans_rhs2);
  assign(gms_lhs,gms_rhs2,trans_rhs2);
  Mp_StM(gms_lhs,alpha,M_rhs1,trans_rhs1);
}

// //////////////////////////////////////////////////////////////////////////////
// /////////////////////////////////////////////////////////////////////// /////
// Level 2 BLAS

// //////////////////////////////////////////////////////////////////////////////
// += operations

// //////////////////////////////////////////////////////////////////////////////
// operations with DVector as lhs

// v_lhs = alpha * op(M_rhs1) * V_rhs2.
template <class M, class V>
void V_StMtV(DVector* v_lhs, value_type alpha, const M& M_rhs1
  , BLAS_Cpp::Transp trans_rhs1, const V& V_rhs2)
{
  MtV_assert_sizes(M_rhs1.rows(),M_rhs1.cols(),trans_rhs1,V_rhs2.dim());
  v_lhs->resize(rows(M_rhs1.rows(),M_rhs1.cols(),trans_rhs1));
  Vp_StMtV(&(*v_lhs)(),alpha,M_rhs1,trans_rhs1,V_rhs2,0.0);
}

// v_lhs = op(M_rhs1) * V_rhs2.
template <class M, class V>
void V_MtV(DVector* v_lhs, const M& M_rhs1, BLAS_Cpp::Transp trans_rhs1
  , const V& V_rhs2)
{
  MtV_assert_sizes(M_rhs1.rows(),M_rhs1.cols(),trans_rhs1,V_rhs2.dim());
  v_lhs->resize(rows(M_rhs1.rows(),M_rhs1.cols(),trans_rhs1));
  Vp_StMtV(&(*v_lhs)(),1.0,M_rhs1,trans_rhs1,V_rhs2,0.0);
}

// //////////////////////////////////////////////////////////////////////////////
// operations with DVectorSlice as lhs

// vs_lhs = alpha * op(M_rhs1) * V_rhs2.
template <class M, class V>
void V_StMtV(DVectorSlice* vs_lhs, value_type alpha, const M& M_rhs1
  , BLAS_Cpp::Transp trans_rhs1, const V& V_rhs2)
{
  MtV_assert_sizes(M_rhs1.rows(),M_rhs1.cols(),trans_rhs1,V_rhs2.dim());
  Vp_V_assert_sizes( vs_lhs->dim(), rows(M_rhs1.rows(),M_rhs1.cols(),trans_rhs1) );
  Vp_StMtV(vs_lhs,alpha,M_rhs1,trans_rhs1,V_rhs2,0.0);
}

// vs_lhs = op(M_rhs1) * V_rhs2.
template <class M, class V>
void V_MtV(DVectorSlice* vs_lhs, const M& M_rhs1, BLAS_Cpp::Transp trans_rhs1
  , const V& V_rhs2)
{
  MtV_assert_sizes(M_rhs1.rows(),M_rhs1.cols(),trans_rhs1,V_rhs2.dim());
  Vp_V_assert_sizes( vs_lhs->dim(), rows(M_rhs1.rows(),M_rhs1.cols(),trans_rhs1) );
  Vp_StMtV(vs_lhs,1.0,M_rhs1,trans_rhs1,V_rhs2,0.0);
}

// //////////////////////////////////////////////////////////////////////////////
// //////////////////////////////////////////////////////////////////////////////
// Level 3 BLAS

// //////////////////////////////////////////////////////////////////////////////
// += operations 

// //////////////////////////////////////////////////////////////////////////////
// = operations with DMatrix as lhs

// gm_lhs = alpha * op(M1_rhs1) * op(M2_rhs2).
template <class M1, class M2>
void M_StMtM(DMatrix* gm_lhs, value_type alpha, const M1& M1_rhs1
  , BLAS_Cpp::Transp trans_rhs1, const M2& M2_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MtM_assert_sizes(	  M1_rhs1.rows(), M1_rhs1.cols(), trans_rhs1
            , M2_rhs2.rows(), M2_rhs2.cols(), trans_rhs2 );
  gm_lhs->resize(	  rows(M1_rhs1.rows(), M1_rhs1.cols(), trans_rhs1)
          , cols(M2_rhs2.rows(), M2_rhs2.cols(), trans_rhs2) );
  Mp_StMtM(&(*gm_lhs)(),alpha,M1_rhs1,trans_rhs1,M2_rhs2,trans_rhs2,0.0);
}

// gm_lhs = op(M1_rhs1) * op(M2_rhs2).
template <class M1, class M2>
void M_MtM(DMatrix* gm_lhs, const M1& M1_rhs1
  , BLAS_Cpp::Transp trans_rhs1, const M2& M2_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MtM_assert_sizes(	  M1_rhs1.rows(), M1_rhs1.cols(), trans_rhs1
            , M2_rhs2.rows(), M2_rhs2.cols(), trans_rhs2 );
  gm_lhs->resize(	  rows(M1_rhs1.rows(), M1_rhs1.cols(), trans_rhs1)
          , cols(M2_rhs2.rows(), M2_rhs2.cols(), trans_rhs2) );
  Mp_StMtM(&(*gm_lhs)(),1.0,M1_rhs1,trans_rhs1,M2_rhs2,trans_rhs2,0.0);
}

// //////////////////////////////////////////////////////////////////////////////
// = operations with DMatrixSlice as lhs

// gms_lhs = alpha * op(M1_rhs1) * op(M2_rhs2).
template <class M1, class M2>
void M_StMtM(DMatrixSlice* gms_lhs, value_type alpha, const M1& M1_rhs1
  , BLAS_Cpp::Transp trans_rhs1, const M2& M2_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MtM_assert_sizes(	  M1_rhs1.rows(), M1_rhs1.cols(), trans_rhs1
            , M2_rhs2.rows(), M2_rhs2.cols(), trans_rhs2 );
  assert_gms_lhs(	  *gms_lhs
          , rows(M1_rhs1.rows(), M1_rhs1.cols(), trans_rhs1)
          , cols(M2_rhs2.rows(), M2_rhs2.cols(), trans_rhs2) );
  Mp_StMtM(gms_lhs,alpha,M1_rhs1,trans_rhs1,M2_rhs2,trans_rhs2,0.0);
}

// gms_lhs = op(M1_rhs1) * op(M2_rhs2).
template <class M1, class M2>
void M_MtM(DMatrixSlice* gms_lhs, const M1& M1_rhs1
  , BLAS_Cpp::Transp trans_rhs1, const M2& M2_rhs2, BLAS_Cpp::Transp trans_rhs2)
{
  MtM_assert_sizes(	  M1_rhs1.rows(), M1_rhs1.cols(), trans_rhs1
            , M2_rhs2.rows(), M2_rhs2.cols(), trans_rhs2 );
  assert_gms_lhs(	  gms_lhs
          , rows(M1_rhs1.rows(), M1_rhs1.cols(), trans_rhs1)
          , cols(M2_rhs2.rows(), M2_rhs2.cols(), trans_rhs2) );
  Mp_StMtM(gms_lhs,1.0,M1_rhs1,trans_rhs1,M2_rhs2,trans_rhs2,0,0);
}

} // end namespace LinAlgOpPack


#endif // LIN_ALG_OP_PACK_DEF_H