This file is indexed.

/usr/include/trilinos/ConstrainedOptPack_DecompositionSystemVarReductPermStd.hpp is in libtrilinos-dev 10.4.0.dfsg-1ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
// @HEADER
// ***********************************************************************
// 
// Moocho: Multi-functional Object-Oriented arCHitecture for Optimization
//                  Copyright (2003) Sandia Corporation
// 
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
// 
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//  
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//  
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
// USA
// Questions? Contact Roscoe A. Bartlett (rabartl@sandia.gov) 
// 
// ***********************************************************************
// @HEADER

#ifndef DECOMPOSITION_SYSTEM_VAR_REDUCT_PERM_STD_H
#define DECOMPOSITION_SYSTEM_VAR_REDUCT_PERM_STD_H

#include <stdexcept>

#include "ConstrainedOptPack_DecompositionSystemVarReductPerm.hpp"
#include "AbstractLinAlgPack_VectorSpace.hpp"

namespace ConstrainedOptPack {

/** \brief Concreate subclass of \c DecompositionSystemVarReductPerm that uses an
 * aggregate \c DecompostionSystemVarReductImp object.
 *
 * ToDo: Finish documentation!
 */
class DecompositionSystemVarReductPermStd : public DecompositionSystemVarReductPerm {
public:

  /** @name Public types */
  //@{

  /** \brief . */
  typedef Teuchos::RCP<DecompositionSystemVarReductImp>    decomp_sys_imp_ptr_t;
  /** \brief . */
  typedef Teuchos::RCP<BasisSystemPerm>                    basis_sys_ptr_t;

  //@}

  /** @name Constructors / initializers */
  //@{

  /// Calls \c this->initialize().
  DecompositionSystemVarReductPermStd(
    const decomp_sys_imp_ptr_t&        decomp_sys_imp  = Teuchos::null
    ,const basis_sys_ptr_t&            basis_sys       = Teuchos::null
    ,bool                              basis_selected  = false
    ,EExplicitImplicit                 D_imp           = MAT_IMP_AUTO
    ,EExplicitImplicit                 Uz_imp          = MAT_IMP_AUTO
    );

  /// Initialize given decomposition system and basis system objects.
  void initialize(
    const decomp_sys_imp_ptr_t&        decomp_sys_imp
    ,const basis_sys_ptr_t&            basis_sys
    ,bool                              basis_selected  = false
    ,EExplicitImplicit                 D_imp           = MAT_IMP_AUTO
    ,EExplicitImplicit                 Uz_imp          = MAT_IMP_AUTO
    );

  //@}

  /** @name Access */
  //@{

  /** \brief . */
  const decomp_sys_imp_ptr_t& decomp_sys_imp() const;
  /** \brief . */
  const basis_sys_ptr_t& basis_sys() const;

  //@}

  /** @name Overridden from DecompositionSystem */
  //@{

  /** \brief . */
  size_type n() const;
  /** \brief . */
  size_type m() const;
  /** \brief . */
  size_type r() const;
  /** \brief . */
  Range1D equ_decomp() const;
  /** \brief . */
  Range1D equ_undecomp() const;
  /** \brief . */
  const VectorSpace::space_ptr_t space_range() const;
  /** \brief . */
  const VectorSpace::space_ptr_t space_null() const;
  /** \brief . */
  const mat_fcty_ptr_t factory_Z() const;
  /** \brief . */
  const mat_fcty_ptr_t factory_Y() const;
  /** \brief . */
  const mat_nonsing_fcty_ptr_t factory_R() const;
  /** \brief . */
  const mat_fcty_ptr_t factory_Uz() const;
  /** \brief . */
  const mat_fcty_ptr_t factory_Uy() const;
  /** \brief . */
  void update_decomp(
    std::ostream          *out
    ,EOutputLevel         olevel
    ,ERunTests            test_what
    ,const MatrixOp       &Gc
    ,MatrixOp             *Z
    ,MatrixOp             *Y
    ,MatrixOpNonsing      *R
    ,MatrixOp             *Uz
    ,MatrixOp             *Uy
    ,EMatRelations        mat_rel
    ) const;
  /** \brief . */
  void print_update_decomp(
    std::ostream& out, const std::string& leading_str ) const;

  //@}

  /** @name Overridden from DecompositionSystemVarReduct */
  //@{

  /** \brief . */
  Range1D var_indep() const;
  /** \brief . */
  Range1D var_dep() const;

  //@}

  /** @name Overridden from DecompositionSystemVarReductPerm */
  //@{

  /** \brief . */
  const perm_fcty_ptr_t   factory_P_var() const;
  /** \brief . */
  const perm_fcty_ptr_t   factory_P_equ() const;
  /** \brief . */
  bool has_basis() const;
  /** \brief . */
  void set_decomp(
    std::ostream          *out
    ,EOutputLevel         olevel
    ,ERunTests            test_what
    ,const Permutation    &P_var
    ,const Range1D        &var_dep
    ,const Permutation    *P_equ
    ,const Range1D        *equ_decomp
    ,const MatrixOp       &Gc
    ,MatrixOp             *Z
    ,MatrixOp             *Y
    ,MatrixOpNonsing      *R
    ,MatrixOp             *Uz
    ,MatrixOp             *Uy
    ,EMatRelations        mat_rel
    );
  /** \brief . */
  void select_decomp(
    std::ostream          *out
    ,EOutputLevel         olevel
    ,ERunTests            test_what
    ,const Vector         *nu
    ,MatrixOp             *Gc
    ,Permutation          *P_var
    ,Range1D              *var_dep
    ,Permutation          *P_equ
    ,Range1D              *equ_decomp
    ,MatrixOp             *Z
    ,MatrixOp             *Y
    ,MatrixOpNonsing      *R
    ,MatrixOp             *Uz
    ,MatrixOp             *Uy
    ,EMatRelations        mat_rel
    );

  //@}

private:

  // /////////////////////////
  // Private data members

  bool                        basis_selected_;  // True if a basis is currently selected
  decomp_sys_imp_ptr_t        decomp_sys_imp_;
  basis_sys_ptr_t             basis_sys_;

  // /////////////////////////
  // Private member functions

  /** \brief . */
  void assert_basis_selected() const;

  // Not defined and not to be called!
  DecompositionSystemVarReductPermStd();
  DecompositionSystemVarReductPermStd(const DecompositionSystemVarReductPermStd&);
  DecompositionSystemVarReductPermStd& operator=(const DecompositionSystemVarReductPermStd&);
  
};	// end class DecompositionSystemVarReductPermStd

// ///////////////////////////////////////
// Inline members

inline
const DecompositionSystemVarReductPermStd::decomp_sys_imp_ptr_t&
DecompositionSystemVarReductPermStd::decomp_sys_imp() const
{
  return decomp_sys_imp_;
}

inline
const DecompositionSystemVarReductPermStd::basis_sys_ptr_t&
DecompositionSystemVarReductPermStd::basis_sys() const
{
  return basis_sys_;
}

}	// end namespace ConstrainedOptPack

#endif // DECOMPOSITION_SYSTEM_VAR_REDUCT_PERM_STD_H