This file is indexed.

/usr/include/trilinos/BelosEpetraAdapter.hpp is in libtrilinos-dev 10.4.0.dfsg-1ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
// @HEADER
// ***********************************************************************
//
//                 Belos: Block Linear Solvers Package
//                 Copyright (2004) Sandia Corporation
//
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
//
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
// USA
// Questions? Contact Michael A. Heroux (maherou@sandia.gov)
//
// ***********************************************************************
// @HEADER

#ifndef BELOS_EPETRA_ADAPTER_HPP
#define BELOS_EPETRA_ADAPTER_HPP

/*! \file BelosEpetraAdapter.hpp
    \brief Provides several interfaces between Belos virtual classes and Epetra concrete classes.
*/

#include "Epetra_MultiVector.h"
#include "Epetra_Operator.h"
#include "Epetra_Map.h"
#include "Epetra_LocalMap.h"
#include "Teuchos_SerialDenseMatrix.hpp"

#include "BelosConfigDefs.hpp"
#include "BelosMultiVec.hpp"
#include "BelosOperator.hpp"
#include "BelosTypes.hpp"

namespace Belos {
 
  //! @name Epetra Adapter Exceptions
  //@{

  /** \brief EpetraMultiVecFailure is thrown when a return value from an Epetra
   * call on an Epetra_MultiVector is non-zero.
   */
  class EpetraMultiVecFailure : public BelosError {public:
    EpetraMultiVecFailure(const std::string& what_arg) : BelosError(what_arg)
    {}};

  /** \brief EpetraOpFailure is thrown when a return value from an Epetra
   * call on an Epetra_Operator is non-zero.
   */
  class EpetraOpFailure : public BelosError {public:
    EpetraOpFailure(const std::string& what_arg) : BelosError(what_arg)
    {}};

  //@}
 
  //--------template class BelosEpetraMultiVec-------------------------------------
  class EpetraMultiVec : public MultiVec<double>, public Epetra_MultiVector {
  public:
    // constructors
    EpetraMultiVec(const Epetra_BlockMap& Map_in, double * array, const int numvecs, const int stride=0);
    EpetraMultiVec(const Epetra_BlockMap& Map_in, const int numvecs, bool zeroOut=true);
    EpetraMultiVec(Epetra_DataAccess CV_in, const Epetra_MultiVector& P_vec, const std::vector<int>& index);
    EpetraMultiVec& operator=(const EpetraMultiVec& pv) { Epetra_MultiVector::operator=(pv); return *this; }
    EpetraMultiVec(const Epetra_MultiVector & P_vec);
    ~EpetraMultiVec();
    //
    //  member functions inherited from Belos::MultiVec
    //
    //  the following is a virtual copy constructor returning
    //  a pointer to the pure virtual class. std::vector values are
    //  not copied; instead a new MultiVec is created containing
    //  a non-zero amount of columns.  
    //
    MultiVec<double> * Clone ( const int numvecs ) const;
    //
    //  the following is a virtual copy constructor returning
    //  a pointer to the pure virtual class. std::vector values are
    //  copied and a new stand-alone MultiVector is created.
    //  (deep copy).
    //
    MultiVec<double> * CloneCopy () const;
    //
    //  the following is a virtual copy constructor returning
    //  a pointer to the pure virtual class. std::vector values are
    //  copied and a new stand-alone MultiVector is created
    //  where only selected columns are chosen.  (deep copy).
    //
    MultiVec<double> * CloneCopy ( const std::vector<int>& index ) const;
    //
    //  the following is a virtual view constructor returning
    //  a pointer to the pure virtual class. std::vector values are 
    //  shared and hence no memory is allocated for the columns.
    //
    MultiVec<double> * CloneViewNonConst ( const std::vector<int>& index );
    //
    //  the following is a virtual view constructor returning
    //  a pointer to the pure virtual class. std::vector values are 
    //  shared and hence no memory is allocated for the columns.
    //
    const MultiVec<double> * CloneView ( const std::vector<int>& index ) const;
    //
    //  this routine sets a subblock of the multivector, which
    //  need not be contiguous, and is given by the indices.
    //
    void SetBlock ( const MultiVec<double>& A, const std::vector<int>& index );
    //
    int GetNumberVecs () const { return NumVectors(); }
    int GetVecLength () const { return GlobalLength(); }
    //
    // *this <- alpha * A * B + beta * (*this)
    //
    void MvTimesMatAddMv ( const double alpha, const MultiVec<double>& A, 
			   const Teuchos::SerialDenseMatrix<int,double>& B, const double beta );
    //
    // *this <- alpha * A + beta * B
    //
    void MvAddMv ( const double alpha, const MultiVec<double>& A, const double beta,
		   const MultiVec<double>& B);

    /*! \brief Scale each element of the vectors in \c *this with \c alpha.
     */
    void MvScale ( const double alpha ) { 
      TEST_FOR_EXCEPTION( this->Scale( alpha )!=0, EpetraMultiVecFailure, 
			  "Belos::EpetraMultiVec::MvScale() call to Scale() returned a nonzero value."); }

    /*! \brief Scale each element of the \c i-th vector in \c *this with \c alpha[i].
     */
    void MvScale ( const std::vector<double>& alpha );
    //
    // B <- alpha * A^T * (*this)
    //
    void MvTransMv ( const double alpha, const MultiVec<double>& A, Teuchos::SerialDenseMatrix<int,double>& B ) const;
    //
    // b[i] = A[i]^T * this[i]
    // 
    void MvDot ( const MultiVec<double>& A, std::vector<double>& b ) const;
    //
    // alpha[i] = norm of i-th column of (*this)
    //	
    void MvNorm ( std::vector<double>& normvec, NormType norm_type = TwoNorm ) const;
    //
    // random vectors in i-th column of (*this)
    //
    void MvRandom() { 
      TEST_FOR_EXCEPTION( Random()!=0, EpetraMultiVecFailure, 
			  "Belos::EpetraMultiVec::MvRandom() call to Random() returned a nonzero value."); }
    //
    // initializes each element of (*this) with alpha
    //
    void MvInit ( const double alpha ) { 
      TEST_FOR_EXCEPTION( PutScalar(alpha)!=0, EpetraMultiVecFailure, 
			  "Belos::EpetraMultiVec::MvInit() call to PutScalar() returned a nonzero value."); }
    //
    // print (*this)
    //
    void MvPrint( std::ostream& os ) const { os << *this << std::endl; };
  private:
  };
  
  
  ///////////////////////////////////////////////////////////////
  //--------template class BelosEpetraOp---------------------
  
  class EpetraOp : public virtual Operator<double> {
  public:
    EpetraOp( const Teuchos::RCP<Epetra_Operator> &Op );
    ~EpetraOp() {};
    void Apply ( const MultiVec<double>& x, MultiVec<double>& y, ETrans trans=NOTRANS ) const;
  private:
    Teuchos::RCP<Epetra_Operator> Epetra_Op;
  };
  
  ///////////////////////////////////////////////////////////////
  //--------template class BelosEpetraPrecOp---------------------
  
  class EpetraPrecOp : public virtual Operator<double>, public virtual Epetra_Operator {
  public:
    //! Basic constructor for applying the operator as its inverse.
    EpetraPrecOp( const Teuchos::RCP<Epetra_Operator> &Op );

    //! Destructor
    virtual ~EpetraPrecOp() {};

    //! Apply method for a Belos::MultiVec [inherited from Belos::Operator class]
    void Apply ( const MultiVec<double>& x, MultiVec<double>& y, ETrans trans=NOTRANS ) const;

    //! Apply method for an Epetra_MultiVector [inherited from Epetra_Operator class]
    int Apply( const Epetra_MultiVector &X, Epetra_MultiVector &Y ) const;

    //! Apply inverse method for an Epetra_MultiVector [inherited from Epetra_Operator class]
    int ApplyInverse( const Epetra_MultiVector &X, Epetra_MultiVector &Y ) const;

    //! Returns a character std::string describing the operator.
    const char* Label() const { return "Epetra_Operator applying A^{-1} as A"; };

    //! Returns the current UseTranspose setting [always false for this operator].
    bool UseTranspose() const { return (false); };

    //! If set true, the transpose of this operator will be applied [not functional for this operator].
    int SetUseTranspose(bool UseTranspose_in) { return 0; };

    //! Returns true if this object can provide an approximate inf-norm [always false for this operator].
    bool HasNormInf() const { return (false); };

    //! Returns the infinity norm of the global matrix [not functional for this operator].
    double NormInf() const  { return (-1.0); };

    //! Returns the Epetra_Comm communicator associated with this operator.
    const Epetra_Comm& Comm() const { return Epetra_Op->Comm(); };

    //! Returns the Epetra_Map object associated with the domain of this operator.
    const Epetra_Map& OperatorDomainMap() const { return Epetra_Op->OperatorDomainMap(); };

    //! Returns the Epetra_Map object associated with the range of this operator.
    const Epetra_Map& OperatorRangeMap() const { return Epetra_Op->OperatorRangeMap(); };
    
  private:

    Teuchos::RCP<Epetra_Operator> Epetra_Op;

  };

  
  ////////////////////////////////////////////////////////////////////
  //
  // Implementation of the Belos::MultiVecTraits for Epetra::MultiVector.
  //
  ////////////////////////////////////////////////////////////////////

  template<>
  class MultiVecTraits<double, Epetra_MultiVector>
  {
  public:
    ///
    static Teuchos::RCP<Epetra_MultiVector> Clone( const Epetra_MultiVector& mv, const int numvecs )
    { return Teuchos::rcp( new Epetra_MultiVector(mv.Map(), numvecs, false) ); }
    ///
    static Teuchos::RCP<Epetra_MultiVector> CloneCopy( const Epetra_MultiVector& mv )
    { return Teuchos::rcp( new Epetra_MultiVector( mv ) ); }
    ///
    static Teuchos::RCP<Epetra_MultiVector> CloneCopy( const Epetra_MultiVector& mv, const std::vector<int>& index )
    { 
      std::vector<int>& tmp_index = const_cast<std::vector<int> &>( index );
      return Teuchos::rcp( new Epetra_MultiVector(Copy, mv, &tmp_index[0], index.size()) ); 
    }
    ///
    static Teuchos::RCP<Epetra_MultiVector> CloneViewNonConst( Epetra_MultiVector& mv, const std::vector<int>& index )
    { 
      std::vector<int>& tmp_index = const_cast<std::vector<int> &>( index );
      return Teuchos::rcp( new Epetra_MultiVector(View, mv, &tmp_index[0], index.size()) ); 
    }
    ///
    static Teuchos::RCP<const Epetra_MultiVector> CloneView( const Epetra_MultiVector& mv, const std::vector<int>& index )
    { 
      std::vector<int>& tmp_index = const_cast<std::vector<int> &>( index );
      return Teuchos::rcp( new Epetra_MultiVector(View, mv, &tmp_index[0], index.size()) ); 
    }
    ///
    static int GetVecLength( const Epetra_MultiVector& mv )
    { return mv.GlobalLength(); }
    ///
    static int GetNumberVecs( const Epetra_MultiVector& mv )
    { return mv.NumVectors(); }
    ///
    static void MvTimesMatAddMv( const double alpha, const Epetra_MultiVector& A, 
				 const Teuchos::SerialDenseMatrix<int,double>& B, 
				 const double beta, Epetra_MultiVector& mv )
    { 
      Epetra_LocalMap LocalMap(B.numRows(), 0, mv.Map().Comm());
      Epetra_MultiVector B_Pvec(View, LocalMap, B.values(), B.stride(), B.numCols());
      
      int info = mv.Multiply( 'N', 'N', alpha, A, B_Pvec, beta );
      TEST_FOR_EXCEPTION(info!=0, EpetraMultiVecFailure, 
			 "Belos::MultiVecTraits<double,Epetra_MultiVector>::MvTimesMatAddMv call to Multiply() returned a nonzero value.");
    }
    ///
    static void MvAddMv( const double alpha, const Epetra_MultiVector& A, const double beta, const Epetra_MultiVector& B, Epetra_MultiVector& mv )
    { 
      int info = mv.Update( alpha, A, beta, B, 0.0 );
      TEST_FOR_EXCEPTION(info!=0, EpetraMultiVecFailure, 
			 "Belos::MultiVecTraits<double,Epetra_MultiVec>::MvAddMv call to Update() returned a nonzero value.");
    }

    /*! \brief Scale each element of the vectors in \c mv with \c alpha.
     */
    static void MvScale ( Epetra_MultiVector& mv, const double alpha )
    { int ret = mv.Scale( alpha );
      TEST_FOR_EXCEPTION(ret!=0, EpetraMultiVecFailure, 
			 "Belos::MultiVecTraits<double,Epetra_MultiVec>::MvScale call to Scale() returned a nonzero value.");
    }

    /*! \brief Scale each element of the \c i-th vector in \c mv with \c alpha[i].
     */
    static void MvScale ( Epetra_MultiVector& mv, const std::vector<double>& alpha )
    {
      // Check to make sure the vector is as long as the multivector has columns.
      int numvecs = mv.NumVectors();
      TEST_FOR_EXCEPTION((int)alpha.size() != numvecs, EpetraMultiVecFailure, 
			 "Belos::MultiVecTraits<double,Epetra_MultiVec>::MvScale scaling vector (alpha) not same size as number of input vectors (mv).");

      int ret = 0;
      std::vector<int> tmp_index( 1, 0 );
      for (int i=0; i<numvecs; i++) {
        Epetra_MultiVector temp_vec(::View, mv, &tmp_index[0], 1);
        ret = temp_vec.Scale( alpha[i] );
        TEST_FOR_EXCEPTION(ret!=0, EpetraMultiVecFailure, 
	                   "Belos::MultiVecTraits<double,Epetra_MultiVec>::MvScale call to Scale() returned a nonzero value.");
        tmp_index[0]++;
      }
    }

    ///
    static void MvTransMv( const double alpha, const Epetra_MultiVector& A, const Epetra_MultiVector& mv, Teuchos::SerialDenseMatrix<int,double>& B )
    { 
      Epetra_LocalMap LocalMap(B.numRows(), 0, mv.Map().Comm());
      Epetra_MultiVector B_Pvec(View, LocalMap, B.values(), B.stride(), B.numCols());
      
      int info = B_Pvec.Multiply( 'T', 'N', alpha, A, mv, 0.0 );
      TEST_FOR_EXCEPTION(info!=0, EpetraMultiVecFailure, 
			 "Belos::MultiVecTraits<double,Epetra_MultiVector>::MvTransMv call to Multiply() returned a nonzero value.");
    }
    ///
    static void MvDot( const Epetra_MultiVector& mv, const Epetra_MultiVector& A, std::vector<double>& b )
    {
      int info = mv.Dot( A, &b[0] );
      TEST_FOR_EXCEPTION(info!=0, EpetraMultiVecFailure, 
			 "Belos::MultiVecTraits<double,Epetra_MultiVector>::MvDot call to Dot() returned a nonzero value.");   
    }
    ///
    static void MvNorm( const Epetra_MultiVector& mv, std::vector<double>& normvec, NormType type = TwoNorm )
    { 
      if ((int)normvec.size() >= mv.NumVectors()) {
        int info = 0;
	switch( type ) {
	case ( OneNorm ) :
	  info = mv.Norm1(&normvec[0]);
	  break;
	case ( TwoNorm ) :
	  info = mv.Norm2(&normvec[0]);
	  break;
	case ( InfNorm ) :	
	  info = mv.NormInf(&normvec[0]);
	  break;
	default:
	  break;
	}
        TEST_FOR_EXCEPTION(info!=0, EpetraMultiVecFailure, 
			   "Belos::MultiVecTraits<double,Epetra_MultiVector>::MvNorm call to Norm() returned a nonzero value.");
      }
    }
    ///
    static void SetBlock( const Epetra_MultiVector& A, const std::vector<int>& index, Epetra_MultiVector& mv )
    { 
      // Extract the "numvecs" columns of mv indicated by the index std::vector.
      int numvecs = index.size(), info = 0;
      std::vector<int>& tmp_index = const_cast<std::vector<int> &>( index );
      Epetra_MultiVector temp_vec(View, mv, &tmp_index[0], numvecs);
      
      if ( A.NumVectors() != numvecs ) {
        std::vector<int> index2( numvecs );
        for(int i=0; i<numvecs; i++)
	  index2[i] = i;
        Epetra_MultiVector A_vec(View, A, &index2[0], numvecs);      
        info = temp_vec.Update( 1.0, A_vec, 0.0, A_vec, 0.0 );
      }
      else {
        info = temp_vec.Update( 1.0, A, 0.0, A, 0.0 );
      }
      TEST_FOR_EXCEPTION(info!=0, EpetraMultiVecFailure, 
			 "Belos::MultiVecTraits<double,Epetra_MultiVector>::SetBlock call to Update() returned a nonzero value.");
    }
    ///
    static void MvRandom( Epetra_MultiVector& mv )
    { TEST_FOR_EXCEPTION( mv.Random()!=0, EpetraMultiVecFailure, 
			  "Belos::MultiVecTraits<double,Epetra_MultiVector>::MvRandom() call to Random() returned a nonzero value.");
    }
    ///
    static void MvInit( Epetra_MultiVector& mv, double alpha = Teuchos::ScalarTraits<double>::zero() )
    { TEST_FOR_EXCEPTION( mv.PutScalar(alpha)!=0, EpetraMultiVecFailure, 
			  "Belos::MultiVecTraits<double,Epetra_MultiVector>::MvInit() call to PutScalar() returned a nonzero value.");
    }
    ///
    static void MvPrint( const Epetra_MultiVector& mv, std::ostream& os )
    { os << mv << std::endl; }
    
  };        
  
  ////////////////////////////////////////////////////////////////////
  //
  // Implementation of the Belos::OperatorTraits for Epetra::Operator.
  //
  ////////////////////////////////////////////////////////////////////
  
  template <> 
  class OperatorTraits < double, Epetra_MultiVector, Epetra_Operator >
  {
  public:
    
    ///
    static void Apply ( const Epetra_Operator& Op, 
     		        const Epetra_MultiVector& x, 
			Epetra_MultiVector& y,
			ETrans trans=NOTRANS )
    { 
      int info = 0;
      if ( trans )
	const_cast<Epetra_Operator &>(Op).SetUseTranspose( true );
      info = Op.Apply( x, y );
      if ( trans )
	const_cast<Epetra_Operator &>(Op).SetUseTranspose( false );      
      TEST_FOR_EXCEPTION(info!=0, EpetraOpFailure, 
			 "Belos::OperatorTraits<double,Epetra_MultiVector,Epetra_Operator>::Apply call to Apply() returned a nonzero value.");
    }
    
  };
  
} // end of Belos namespace 

#endif 
// end of file BELOS_EPETRA_ADAPTER_HPP