This file is indexed.

/usr/include/trilinos/AbstractLinAlgPack_MatrixOpThyra.hpp is in libtrilinos-dev 10.4.0.dfsg-1ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
// @HEADER
// ***********************************************************************
// 
// Moocho: Multi-functional Object-Oriented arCHitecture for Optimization
//                  Copyright (2003) Sandia Corporation
// 
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
// 
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//  
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//  
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
// USA
// Questions? Contact Roscoe A. Bartlett (rabartl@sandia.gov) 
// 
// ***********************************************************************
// @HEADER

#ifndef ALAP_MATRIX_OP_Thyra_HPP
#define ALAP_MATRIX_OP_Thyra_HPP

#include "AbstractLinAlgPack_MatrixOp.hpp"
#include "AbstractLinAlgPack_VectorSpaceThyra.hpp"
#include "Thyra_LinearOpBase.hpp"

namespace AbstractLinAlgPack {

/** \brief <tt>MatrixOp</tt> adapter subclass for <tt>Thyra::LinearOpBase</tt>.
 */
class MatrixOpThyra : virtual public MatrixOp {
public:

  /** @name Constructors / Initializers */
  //@{

  /** \brief Construct to uninitialized.
   *
   * Postconditioins:<ul>
   * <li><tt>this->thyra_linear_op().get() == NULL</tt>
   * <li><tt>this->rows() == 0</tt>
   * <li><tt>this->cols() == 0</tt>
   * </ul>
   */
  MatrixOpThyra();
  /** \brief Calls <tt>this->initialize()</tt>.
   */
  MatrixOpThyra(
    const Teuchos::RCP<const Thyra::LinearOpBase<value_type> >   &thyra_linear_op
    ,BLAS_Cpp::Transp                                                    thyra_linear_op_trans = BLAS_Cpp::no_trans
    );
  /** \brief Initalize given a smart pointer to a <tt>Thyra::LinearOpBase</tt> object.
   *
   * @param  thyra_linear_op  [in] Smart pointer to Thyra vector <tt>this</tt> will adapt.
   *
   * Preconditioins:<ul>
   * <li><tt>thyra_linear_op.get() != NULL</tt> (throw <tt>std::invalid_argument</tt>)
   * <li><tt>thyra_linear_op->opSupported(Thyra::NOTRANS) && thyra_linear_op->opSupported(Thyra::TRANS)
   *     (throw <tt>std::invalid_argument</tt>)
   * </ul>
   *
   * Postconditioins:<ul>
   * <li><tt>this->thyra_linear_op().get() == thyra_linear_op.get()</tt>
   * <li><tt>this->thyra_linear_op_trans() == thyra_linear_op_trans</tt>
   * <li><tt>this->rows() == thyra_linear_op->range()->dim()</tt>
   * <li><tt>this->cols() == thyra_linear_op->domain()->dim()</tt>
   * </ul>
   */
  virtual void initialize(
    const Teuchos::RCP<const Thyra::LinearOpBase<value_type> >   &thyra_linear_op
    ,BLAS_Cpp::Transp                                                    thyra_linear_op_trans = BLAS_Cpp::no_trans
    );
  /** \brief Set to uninitialized and return smart pointer to the internal <tt>Thyra::VectorBase</tt> object.
   *
   * Postconditioins:<ul>
   * <li><tt>this->thyra_linear_op().get() == NULL</tt>
   * </ul>
   */
  Teuchos::RCP<const Thyra::LinearOpBase<value_type> > set_uninitialized();
  /** \brief Return a (converted) smart pointer to the internal smart pointer to the <tt>Thyra::VectorBase</tt> object.
   *
   * If <tt>this->thyra_linear_op().count() == 1</tt>, then <tt>this</tt>
   * has sole ownership of the <tt>*this->thyra_linear_op()</tt> object.
   */
  const Teuchos::RCP<const Thyra::LinearOpBase<value_type> >& thyra_linear_op() const;
  /** \brief . */
  BLAS_Cpp::Transp thyra_linear_op_trans() const;

  //@}

  /** @name Overridden from MatrixBase */
  //@{

  /** \brief . */
  const VectorSpace& space_cols() const;
  /** \brief . */
  const VectorSpace& space_rows() const;

  //@}

  /** @name Overridden from MatrixOp */
  //@{

  /** \brief . */
  mat_mut_ptr_t clone();
  /** \brief . */
  MatrixOp& operator=(const MatrixOp& mwo_rhs);
  /** \brief . */
  void Vp_StMtV(
    VectorMutable* v_lhs, value_type alpha, BLAS_Cpp::Transp trans_rhs1
    ,const Vector& v_rhs2, value_type beta
    ) const;
  /// Works for <tt>MultiVectorMutableThyra</tt> arguments
  bool Mp_StMtM(
    MatrixOp* mwo_lhs, value_type alpha
    ,BLAS_Cpp::Transp trans_rhs1
    ,const MatrixOp& mwo_rhs2, BLAS_Cpp::Transp trans_rhs2
    ,value_type beta
    ) const;

  //@}

private:
  
#ifdef DOXYGEN_COMPILE
  Thyra::LinearOpBase<value_type>                                *thyra_linear_op;
#else
  Teuchos::RCP<const Thyra::LinearOpBase<value_type> >   thyra_linear_op_;
#endif
  BLAS_Cpp::Transp                                               thyra_linear_op_trans_;
  VectorSpaceThyra                                               space_cols_;
  VectorSpaceThyra                                               space_rows_;

}; // end class MatrixOpThyra

// //////////////////////////////////////////////////
// Inlined functions

inline
const Teuchos::RCP<const Thyra::LinearOpBase<value_type> >&
MatrixOpThyra::thyra_linear_op() const
{
  return thyra_linear_op_;
}

inline
BLAS_Cpp::Transp MatrixOpThyra::thyra_linear_op_trans() const
{
  return thyra_linear_op_trans_;
}

} // end namespace AbstractLinAlgPack

#endif // ALAP_MATRIX_OP_Thyra_HPP