This file is indexed.

/usr/include/trilinos/AbstractLinAlgPack_COOMatrixTmplOpDecl.hpp is in libtrilinos-dev 10.4.0.dfsg-1ubuntu2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
// @HEADER
// ***********************************************************************
// 
// Moocho: Multi-functional Object-Oriented arCHitecture for Optimization
//                  Copyright (2003) Sandia Corporation
// 
// Under terms of Contract DE-AC04-94AL85000, there is a non-exclusive
// license for use of this work by or on behalf of the U.S. Government.
// 
// This library is free software; you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 2.1 of the
// License, or (at your option) any later version.
//  
// This library is distributed in the hope that it will be useful, but
// WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
// Lesser General Public License for more details.
//  
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
// USA
// Questions? Contact Roscoe A. Bartlett (rabartl@sandia.gov) 
// 
// ***********************************************************************
// @HEADER

#ifndef COO_MATRIX_TMPL_OP_DECL_H
#define COO_MATRIX_TMPL_OP_DECL_H

#include "AbstractLinAlgPack_Types.hpp"

namespace AbstractLinAlgPack {

/** \defgroup COOMatrixTmplOp_grp Linear algebra operations for coordinate matrices.
 *
 * This is a basic set of BLAS like linear algebra operations with sparse
 * coordinate (COO) matrices accesses through a template interface
 * called COOMatrixTemplateInterface.  Through this template interface the client
 * can inquire as to the dimensions of the matrix (#rows()#, #cols()#) and how many
 * nonzero elements it has (#nz()#).  The nonzero elements are accessed using forward
 * iterators returned from #begin()# and #end()#.  The iterator must return a type
 * with an interface compatable with the SparseCOOElementTemplateInterface specification.
 *
 * The specifications for these template interfaces are given below:\\
 *
 \begin{verbatim}
  class SparseCOOElementTemplateInterface {
  public:
    typedef ...		value_type;
    typedef ...		index_type;

    value_type& value();
    value_type value() const;
    index_type row_i() const;
    index_type col_j() const;
  };

  class COOMatrixTemplateInterface {
  public:
    typedef ...		size_type;
    typedef ...		difference_type;
    typedef ...		element_type;		// SparseCOOElementTemplateInterface compliant
    typedef ...		iterator;			// returns an element_type
    typedef ...		const_iterator;		// returns a const element_type

    size_type rows() const;
    size_type cols() const;
    size_type nz() const;
    difference_type row_offset() const;
    difference_type col_offset() const;
    iterator begin();
    const_iterator begin() const;
    iterator end();
    const_iterator end() const;
  };
 \end{verbatim}
 *
 * The nonzero elements are specified by the triplet (val,i,j) where:\\
 *
 * #val[k]	= (begin() + k)->value()#\\
 * #i[k]	= (begin() + k)->row_i() + row_offset()#\\
 * #j[k]	= (begin() + k)->col_j() + col_offset()#\\
 *
 * for #k# = #0#, ..., #nz() - 1#.
 *
 * The iterator returned by the begin() functions needs to be a forward
 * iterator that supports <tt>++itr</tt>.  These elements need not be sorted but
 * the operations may perform better if they are.  What order will dependent on
 * which operation and which options.  See the individual operations to determine
 * which sorting orders are best.
 *
 * Actually these linear algebra functions only use the constant interface to
 * these tempalte interfaces so the iterators only need to support the constant
 * interface.
 *
 * These functions use the same basic naming sceme as DenseLinAlgPack with a
 * few exceptions.  All of the operations are += instead of = because of the
 * nature of the sparse matrix calculates so instead of #V_# and #M_# starting
 * out the function names they begin with #Vp_# and #Mp_# with #p_# used
 * to signify += instead of just =.  Also #COOM# replaces #M# where a 
 * COO matrrix replaces the dense DMatrix.  This is because the overload
 * resolution rules would mess up the implicit type conversions that
 * go on in DenseLinAlgPack if the exact same names where used.
 */
//@{

/// gms_lhs += alpha * op(coom_rhs) (time = O(coom_rhs.nz(), space = O(1))
template<class T_COOM>
void Mp_StCOOM(DMatrixSlice* gms_lhs, value_type alpha, const T_COOM& coom_rhs
  , BLAS_Cpp::Transp trans_rhs);

/// vs_lhs += alpha * op(coom_rhs1) * vs_rhs2 (BLAS xGEMV) (time = O(coom_rhs.nz(), space = O(1))
template<class T_COOM>
void Vp_StCOOMtV(DVectorSlice* vs_lhs, value_type alpha, const T_COOM& coom_rhs1
  , BLAS_Cpp::Transp trans_rhs1, const DVectorSlice& vs_rhs2);

/// gms_lhs += alpha * op(coom_rhs1) * op(gms_rhs2) (right) (BLAS xGEMM)
template<class T_COOM>
void Mp_StCOOMtM(DMatrixSlice* gms_lhs, value_type alpha, const T_COOM& coom_rhs1
  , BLAS_Cpp::Transp trans_rhs1, const DMatrixSlice& gms_rhs2, BLAS_Cpp::Transp trans_rhs2);

/// gms_lhs += alpha * op(gms_rhs1) * op(coom_rhs2) (left) (BLAS xGEMM)
template<class T_COOM>
void Mp_StMtCOOM(DMatrixSlice* gms_lhs, value_type alpha, const DMatrixSlice& gms_rhs1
  , BLAS_Cpp::Transp trans_rhs1, const T_COOM& coom_rhs2, BLAS_Cpp::Transp trans_rhs2);

// / gms_lhs = alpha * op(coom_rhs1) * op(sym_rhs2) (right) (BLAS xSYMM)
//template<class T_COOM>
//void Mp_StCOOMtSM(DMatrixSlice* gms_lhs, value_type alpha, const T_COOM& coom_rhs1
//	, BLAS_Cpp::Transp trans_rhs1, const DMatrixSliceSym& sym_rhs2, BLAS_Cpp::Transp trans_rhs2);

// / gms_lhs = alpha * op(sym_rhs1) * op(coom_rhs2) (left) (BLAS xSYMM)
//template<class T_COOM>
//void Mp_StSMtCOOM(DMatrixSlice* gms_lhs, value_type alpha, const DMatrixSliceSym& sym_rhs1
//	, BLAS_Cpp::Transp trans_rhs1, const T_COOM& coom_rhs2, BLAS_Cpp::Transp trans_rhs2);

// / gms_lhs = alpha * op(coom_rhs1) * op(tri_rhs2) (right) (BLAS xTRMM)
//template<class T_COOM>
//void Mp_StCOOMtSM(DMatrixSlice* gms_lhs, value_type alpha, const T_COOM& coom_rhs1
//	, BLAS_Cpp::Transp trans_rhs1, const DMatrixSliceTri& tri_rhs2, BLAS_Cpp::Transp trans_rhs2);

// / gms_lhs = alpha * op(tri_rhs1) * op(coom_rhs2) (left) (BLAS xTRMM)
//template<class T_COOM>
//void Mp_StSMtCOOM(DMatrixSlice* gms_lhs, value_type alpha, const DMatrixSliceTri& tri_rhs1
//	, BLAS_Cpp::Transp trans_rhs1, const T_COOM& coom_rhs2, BLAS_Cpp::Transp trans_rhs2);

//@}

} // end namespace AbstractLinAlgPack

#endif	// COO_MATRIX_TMPL_OP_DECL_H