This file is indexed.

/usr/include/sofa/component/topology/SimpleTesselatedTetraTopologicalMapping.h is in libsofa1-dev 1.0~beta4-6.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
/******************************************************************************
*       SOFA, Simulation Open-Framework Architecture, version 1.0 beta 4      *
*                (c) 2006-2009 MGH, INRIA, USTL, UJF, CNRS                    *
*                                                                             *
* This library is free software; you can redistribute it and/or modify it     *
* under the terms of the GNU Lesser General Public License as published by    *
* the Free Software Foundation; either version 2.1 of the License, or (at     *
* your option) any later version.                                             *
*                                                                             *
* This library is distributed in the hope that it will be useful, but WITHOUT *
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or       *
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License *
* for more details.                                                           *
*                                                                             *
* You should have received a copy of the GNU Lesser General Public License    *
* along with this library; if not, write to the Free Software Foundation,     *
* Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301 USA.          *
*******************************************************************************
*                               SOFA :: Modules                               *
*                                                                             *
* Authors: The SOFA Team and external contributors (see Authors.txt)          *
*                                                                             *
* Contact information: contact@sofa-framework.org                             *
******************************************************************************/
#ifndef SOFA_COMPONENT_TOPOLOGY_SIMPLETESELATEDTETRATOPOLOGICALMAPPING_H
#define SOFA_COMPONENT_TOPOLOGY_SIMPLETESELATEDTETRATOPOLOGICALMAPPING_H

#include <sofa/core/componentmodel/topology/TopologicalMapping.h>

#include <sofa/defaulttype/Vec.h>
#include <map>
#include <set>

#include <sofa/core/BaseMapping.h>
#include <sofa/component/topology/PointData.h>
#include <sofa/component/topology/EdgeData.h>
#include <sofa/component/topology/TetrahedronData.h>

namespace sofa
{
namespace component
{
namespace topology
{
using namespace sofa::defaulttype;
using namespace sofa::component::topology;
using namespace sofa::core::componentmodel::topology;
using namespace sofa::core;

/**
 * This class, called SimpleTesselatedTetraTopologicalMapping, is a specific implementation of the interface TopologicalMapping where :
 *
 * INPUT TOPOLOGY = TetrahedronSetTopology
 * OUTPUT TOPOLOGY = Set of TetrahedronSetTopologies, as the boundary of the INPUT TOPOLOGY
 *
 * Each tetrahedron in the input Topology will be divided in eight tetrahedrom in the output topology
 *
 * SimpleTesselatedTetraTopologicalMapping class is templated by the pair (INPUT TOPOLOGY, OUTPUT TOPOLOGY)
 *
*/

class SimpleTesselatedTetraTopologicalMapping : public TopologicalMapping
{
public:
	/** \brief Constructor.
         *
	 * @param from the topology issuing TopologyChange objects (the "source").
	 * @param to   the topology for which the TopologyChange objects must be translated (the "target").
	 */
	SimpleTesselatedTetraTopologicalMapping ( In* from=NULL, Out* to=NULL );

	/** \brief Destructor.
	 *
         * Does nothing.
         */
	virtual ~SimpleTesselatedTetraTopologicalMapping(){};

	/** \brief Initializes the target BaseTopology from the source BaseTopology.
	 */
	virtual void init();

	/** \brief Translates the TopologyChange objects from the source to the target.
	 *
	 * Translates each of the TopologyChange objects waiting in the source list so that they have a meaning and
	 * reflect the effects of the first topology changes on the second topology.
	 *
	 */
	virtual void updateTopologicalMappingTopDown();

	/** \brief Translates the TopologyChange objects from the target to the source.
	 *
	 * Translates each of the TopologyChange objects waiting in the source list so that they have a meaning and
	 * reflect the effects of the second topology changes on the first topology.
	 *
	 */
	virtual void updateTopologicalMappingBottomUp();

	/// Return true if this mapping is able to propagate topological changes from input to output model
	virtual bool propagateFromInputToOutputModel() { return true; }

	/// Return true if this mapping is able to propagate topological changes from output to input model
	virtual bool propagateFromOutputToInputModel() { return true; }

	/// Pre-construction check method called by ObjectFactory.
	///
	/// This implementation read the object1 and object2 attributes and check
	/// if they are compatible with the input and output topology types of this
	/// mapping.
	template<class T>
	static bool canCreate ( T*& obj, core::objectmodel::BaseContext* context, core::objectmodel::BaseObjectDescription* arg )
	{
		if ( arg->findObject ( arg->getAttribute ( "object1","../.." ) ) == NULL )
			context->serr << "Cannot create "<<className ( obj ) <<" as object1 is missing." << context->sendl;
	
		if ( arg->findObject ( arg->getAttribute ( "object2",".." ) ) == NULL )
			context->serr << "Cannot create "<<className ( obj ) <<" as object2 is missing." << context->sendl;

		if ( arg->findObject ( arg->getAttribute ( "object1","../.." ) ) == NULL || arg->findObject ( arg->getAttribute ( "object2",".." ) ) == NULL )
			return false;

		BaseMeshTopology* topoIn;
		BaseMeshTopology* topoOut;

		( dynamic_cast<sofa::core::objectmodel::BaseObject*> ( arg->findObject ( arg->getAttribute ( "object1","../.." ) ) ) )->getContext()->get ( topoIn );
		( dynamic_cast<sofa::core::objectmodel::BaseObject*> ( arg->findObject ( arg->getAttribute ( "object2",".." ) ) ) )->getContext()->get ( topoOut );

		if ( dynamic_cast<In*> ( topoIn ) == NULL )
			return false;

		if ( dynamic_cast<Out*> ( topoOut ) == NULL )
			return false;

		return BaseMapping::canCreate ( obj, context, arg );
	}

	/// Construction method called by ObjectFactory.
	///
	/// This implementation read the object1 and object2 attributes to
	/// find the input and output topologies of this mapping.
	template<class T>
	static void create ( T*& obj, core::objectmodel::BaseContext* context, core::objectmodel::BaseObjectDescription* arg )
	{
		BaseMeshTopology* topoIn=NULL;
		BaseMeshTopology* topoOut=NULL;
		if ( arg )
		{
			if ( arg->findObject ( arg->getAttribute ( "object1","../.." ) ) != NULL )
				( dynamic_cast<sofa::core::objectmodel::BaseObject*> ( arg->findObject ( arg->getAttribute ( "object1","../.." ) ) ) )->getContext()->get ( topoIn );

			if ( arg->findObject ( arg->getAttribute ( "object2",".." ) ) != NULL )
				( dynamic_cast<sofa::core::objectmodel::BaseObject*> ( arg->findObject ( arg->getAttribute ( "object2",".." ) ) ) )->getContext()->get ( topoOut );
		}
		obj = new T (
		    ( arg?dynamic_cast<In*> ( topoIn ) :NULL ),
		    ( arg?dynamic_cast<Out*> ( topoOut ) :NULL ) );

		if ( context ) context->addObject ( obj );

		if ( ( arg ) && ( arg->getAttribute ( "object1" ) ) )
		{
			obj->object1.setValue ( arg->getAttribute ( "object1" ) );
			arg->removeAttribute ( "object1" );
		}

		if ( ( arg ) && ( arg->getAttribute ( "object2" ) ) )
		{
			obj->object2.setValue ( arg->getAttribute ( "object2" ) );
			arg->removeAttribute ( "object2" );
		}

		if ( arg ) obj->parse ( arg );
	}

	const PointData<int>& getPointMappedFromPoint() const { return pointMappedFromPoint; }
	const EdgeData<int>& getPointMappedFromEdge() const { return pointMappedFromEdge; }
	const PointData<int>& getPointSource() const { return pointSource; }

protected:
	Data< std::string > object1;
	Data< std::string > object2;

	PointData<int> pointMappedFromPoint; ///< Each point of the input topology is mapped to the same point.
	EdgeData<int> pointMappedFromEdge; ///< Each edge of the input topology is mapped to his midpoint.
	TetrahedronData< fixed_array<int, 8> > tetrasMappedFromTetra; ///< Each Tetrahedron of the input topology is mapped to the 8 tetrahedrons in which it can be divided.

	PointData<int> pointSource; ///< Which input topology element map to a given point in the output topology : 0 -> none, > 0 -> point index + 1, < 0 , - edge index -1
	TetrahedronData<int> tetraSource; ///<Which tetra from the input topology map to a given tetra in the output topology (-1 if none)

	DataPtr< helper::vector<int> > d_pointMappedFromPoint; ///< Show d_pointMappedFromPoint in the gui for debug
	DataPtr< helper::vector<int> > d_pointMappedFromEdge; ///< Show d_pointMappedFromEdge in the gui for debug
	DataPtr< helper::vector<int> > d_pointSource; ///< show d_pointSource in the gui for debug

	void swapOutputPoints(int i1, int i2);
	void removeOutputPoints( const sofa::helper::vector<unsigned int>& tab );
	void renumberOutputPoints( const sofa::helper::vector<unsigned int>& tab );

	void swapOutputTetras(int i1, int i2);
	void removeOutputTetras( const sofa::helper::vector<unsigned int>& tab );

	void setPointSource(int i, int source)
	{
		helper::vector<int> *pointSourceData = pointSource.beginEdit();
		helper::vector<int> *pointMappedFromPointData = pointMappedFromPoint.beginEdit();
		helper::vector<int>& pointMappedFromEdgeData = *(pointMappedFromEdge.beginEdit());

		if (i != -1)
			(*pointSourceData)[i] = source;
		if (source > 0)
		{
			(*pointMappedFromPointData)[source-1] = i;
		}
		else if (source < 0)
		{
			pointMappedFromEdgeData[-source-1] = i;
		}
		pointSource.endEdit();
		pointMappedFromPoint.endEdit();
		pointMappedFromEdge.endEdit();
	}
    std::set<unsigned int> tetrasToRemove;


	void swapInputPoints(int i1, int i2);
	void removeInputPoints( const sofa::helper::vector<unsigned int>& tab );
	void renumberInputPoints( const sofa::helper::vector<unsigned int>& tab );
	void swapInputEdges(int i1, int i2);
	void removeInputEdges( const sofa::helper::vector<unsigned int>& tab );

	void swapInputTetras(int i1, int i2);
	void removeInputTetras( const sofa::helper::vector<unsigned int>& tab );

};

} // namespace topology
} // namespace component
} // namespace sofa

#endif // SOFA_COMPONENT_TOPOLOGY_TETRA2TRIANGLETOPOLOGICALMAPPING_H