This file is indexed.

/usr/include/openturns/Gamma.hxx is in libopenturns-dev 0.15-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
//                                               -*- C++ -*-
/**
 *  @file  Gamma.hxx
 *  @brief The Gamma distribution
 *
 *  (C) Copyright 2005-2011 EDF-EADS-Phimeca
 *
 *  This library is free software; you can redistribute it and/or
 *  modify it under the terms of the GNU Lesser General Public
 *  License as published by the Free Software Foundation; either
 *  version 2.1 of the License.
 *
 *  This library is distributed in the hope that it will be useful
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
 *  Lesser General Public License for more details.
 *
 *  You should have received a copy of the GNU Lesser General Public
 *  License along with this library; if not, write to the Free Software
 *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307 USA
 *
 *  @author: $LastChangedBy: souchaud $
 *  @date:   $LastChangedDate: 2011-07-01 10:34:36 +0200 (Fri, 01 Jul 2011) $
 *  Id:      $Id: Gamma.hxx 1981 2011-07-01 08:34:36Z souchaud $
 */
#ifndef OPENTURNS_GAMMA_HXX
#define OPENTURNS_GAMMA_HXX

#include "OTprivate.hxx"
#include "NonEllipticalDistribution.hxx"

namespace OpenTURNS {

  namespace Uncertainty {

    namespace Distribution {


      /**
       * @class Gamma
       *
       * The Gamma distribution.
       */
      class Gamma
        : public Model::NonEllipticalDistribution
      {
        CLASSNAME;
      public:

        typedef Base::Common::InvalidArgumentException               InvalidArgumentException;
        typedef Model::NonEllipticalDistribution                     NonEllipticalDistribution;  // required by SWIG
        typedef NonEllipticalDistribution::NumericalPoint            NumericalPoint;
        typedef NonEllipticalDistribution::NumericalSample           NumericalSample;
        typedef NonEllipticalDistribution::CovarianceMatrix          CovarianceMatrix;
        typedef NonEllipticalDistribution::NumericalPointWithDescriptionCollection  NumericalPointWithDescriptionCollection;
        typedef NonEllipticalDistribution::NotDefinedException       NotDefinedException;
        typedef NonEllipticalDistribution::StorageManager            StorageManager;

        enum ParameterSet { KLAMBDA, MUSIGMA };


        /** Default constructor */
        Gamma();

        /** Parameters constructor */
        Gamma(const NumericalScalar arg1,
              const NumericalScalar arg2,
              const NumericalScalar gamma = 0.0,
              const ParameterSet set = KLAMBDA)
          /* throw (InvalidArgumentException) */;


        /** Comparison operator */
        Bool operator ==(const Gamma & other) const;

        /** String converter */
        String __repr__() const;
        String __str__(const String & offset = "") const;



        /* Interface inherited from Distribution */

        /** Virtual constructor */
        virtual Gamma * clone() const;

        /** Get one realization of the distribution */
        NumericalPoint getRealization() const;

        /** Get the DDF of the distribution */
        using NonEllipticalDistribution::computeDDF;
        NumericalPoint computeDDF(const NumericalPoint & point) const;

        /** Get the PDF of the distribution */
        using NonEllipticalDistribution::computePDF;
        NumericalScalar computePDF(const NumericalPoint & point) const;

        /** Get the CDF of the distribution */
        using NonEllipticalDistribution::computeCDF;
        NumericalScalar computeCDF(const NumericalPoint & point, const Bool tail = false) const;

        /** Get the characteristic function of the distribution, i.e. phi(u) = E(exp(I*u*X)) */
        NumericalComplex computeCharacteristicFunction(const NumericalScalar x,
                                                       const Bool logScale = false) const;

        /** Get the PDFGradient of the distribution */
        NumericalPoint computePDFGradient(const NumericalPoint & point) const;

        /** Get the CDFGradient of the distribution */
        NumericalPoint computeCDFGradient(const NumericalPoint & point) const;

        /** Get the standard deviation of the distribution */
        NumericalPoint getStandardDeviation() const /* throw(NotDefinedException) */;

        /** Get the skewness of the distribution */
        NumericalPoint getSkewness() const /* throw(NotDefinedException) */;

        /** Get the kurtosis of the distribution */
        NumericalPoint getKurtosis() const /* throw(NotDefinedException) */;

        /** Parameters value and description accessor */
        NumericalPointWithDescriptionCollection getParametersCollection() const;
        using NonEllipticalDistribution::setParametersCollection;
        void setParametersCollection(const NumericalPointCollection & parametersCollection);

        /* Interface specific to Gamma */

        /** K accessor */
        void setK(const NumericalScalar k)
          /* throw(InvalidArgumentException) */;
        NumericalScalar getK() const;

        /** Lambda accessor */
        void setLambda(const NumericalScalar lambda)
          /* throw(InvalidArgumentException) */;
        NumericalScalar getLambda() const;

        /** K and lambda accessor */
        void setKLambda(const NumericalScalar k,
                        const NumericalScalar lambda);

        /** Mu accessor */
        void setMuSigma(const NumericalScalar mu,
                        const NumericalScalar sigma);
        NumericalScalar getMu() const;

        /** Sigma accessor */
        NumericalScalar getSigma() const;

        /** Gamma accessor */
        void setGamma(const NumericalScalar gamma);
        NumericalScalar getGamma() const;

        /** Method save() stores the object through the StorageManager */
        void save(StorageManager::Advocate & adv) const;

        /** Method load() reloads the object from the StorageManager */
        void load(StorageManager::Advocate & adv);


      protected:


      private:

        /** Compute the mean of the distribution */
        void computeMean() const;

        /** Compute the covariance of the distribution */
        void computeCovariance() const;

        /** Get the quantile of the distribution */
        NumericalScalar computeScalarQuantile(const NumericalScalar prob,
                                              const Bool tail = false,
                                              const NumericalScalar precision = DefaultQuantileEpsilon) const;

        /** Compute the numerical range of the distribution given the parameters values */
        void computeRange();

        /** Update the derivative attributes */
        void update();

        /** The main parameter set of the distribution */
        NumericalScalar k_;
        NumericalScalar lambda_;
        NumericalScalar gamma_;
        NumericalScalar normalizationFactor_;

      }; /* class Gamma */


    } /* namespace Distribution */
  } /* namespace Uncertainty */
} /* namespace OpenTURNS */

#endif /* OPENTURNS_GAMMA_HXX */