/usr/include/ncbi/urkfltr.h is in libncbi6-dev 6.1.20110713-3ubuntu2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 | /*
* ===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
* File Name: urkfltr.h
*
* Author(s): John Kuzio
*
* Version Creation Date: 98-01-01
*
* $Revision: 6.4 $
*
* File Description: filter header
*
* Modifications:
* --------------------------------------------------------------------------
* Date Name Description of modification
* --------------------------------------------------------------------------
* $Log: urkfltr.h,v $
* Revision 6.4 1998/09/16 17:46:45 kuzio
* cvs logging
*
*
* ==========================================================================
*/
#ifndef _URKFLTR__
#define _URKFLTR__
#include <ncbi.h>
#include <seqport.h>
#ifdef __cplusplus
extern "C" {
#endif
#define MAXSEQCHUNK 262144
#define NA_FILTER 0
#define NA_FILTER_GC 1
#define NA_FILTER_AT 2
#define NA_FILTER_PUR 3
#define NA_FILTER_PYR 4
#define AA_FILTER_COMP 100
#define AA_FILTER_COMP_HOPP 101
#define AA_FILTER_COMP_KYTE 102
typedef struct filterdata
{
Int4 window, filtertype, filtersize;
CharPtr filterdatafile;
CharPtr res;
FloatHiPtr scr;
FloatHi maxscr;
} FilterDat, PNTR FilterDatPtr;
extern Int4 ReadFilterData (FilterDatPtr fltp);
extern FilterDatPtr FilterDatNew (Int4 filtertype, Int4 window);
extern FilterDatPtr FilterDatFree (FilterDatPtr fltp);
extern FloatHiPtr urkFilterSeq (CharPtr seq, Int4 start, Int4 end,
FilterDatPtr fltp);
extern FloatHiPtr FilterSeqPort (SeqPortPtr spp,
Int4 start, Int4 end,
FilterDatPtr fltp);
extern FloatHiPtr FilterBioseq (BioseqPtr bsp,
Int4 start, Int4 end,
FilterDatPtr fltp);
extern FloatHiPtr FilterSeqLoc (SeqLocPtr slp,
FilterDatPtr fltp);
extern SeqLocPtr FilterFilter (FloatHiPtr score, FloatHi maxscore,
Int4 window, FloatHi percentcut,
Int4 length, SeqIdPtr sip,
Boolean flagMeld, Boolean flagHighPass);
#ifdef __cplusplus
}
#endif
#endif
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