/usr/include/ncbi/salptool.h is in libncbi6-dev 6.1.20110713-3ubuntu2.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | /* salpedit.h */
#ifndef __SALPTOOL__
#define __SALPTOOL__
#include <ncbi.h>
#include <objalign.h>
#include <blast.h>
typedef struct p_seqaligninfo{
SeqAlignPtr sap;
SeqIdPtr sip;
Boolean used;
struct p_seqaligninfo PNTR next;
} PSeqAlignInfo, PNTR PSeqAlignInfoPtr;
NLM_EXTERN void SeqAlignReverseOrder(SeqAlignPtr align);
NLM_EXTERN void SeqAlignSwapSeqs(SeqAlignPtr align);
NLM_EXTERN PSeqAlignInfoPtr SeqAlignToPSeqAlignInfo (SeqAlignPtr sap);
NLM_EXTERN SeqAlignPtr ReassembleSeqAlignFromPSeqAlignInfo(PSeqAlignInfoPtr alip);
NLM_EXTERN SeqAlignPtr SeqAlignSetGlobalFromLocal(SeqAlignPtr align,SeqLocPtr loc_1, SeqLocPtr loc_2, BioseqPtr bsp_1, BioseqPtr bsp_2, FILE *err_fp,Int4 MaxGap);
NLM_EXTERN Boolean TruncateAlignment (SeqAlignPtr salp, Int4 num_aln_pos, Boolean from_left);
NLM_EXTERN SeqAlignPtr MakeDiscontiguousAlignments (SeqAlignPtr salp);
#endif
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