/usr/include/ncbi/objmacro.h is in libncbi6-dev 6.1.20110713-3ubuntu2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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2622 2623 2624 2625 2626 2627 2628 2629 2630 2631 2632 2633 2634 2635 2636 2637 2638 2639 2640 2641 2642 2643 2644 2645 2646 2647 2648 2649 2650 2651 2652 2653 2654 2655 2656 2657 2658 2659 2660 2661 2662 2663 2664 2665 2666 2667 2668 2669 2670 2671 2672 2673 | #ifndef _objmacro_
#define _objmacro_
#undef NLM_EXTERN
#ifdef NLM_IMPORT
#define NLM_EXTERN NLM_IMPORT
#else
#define NLM_EXTERN extern
#endif
#ifdef __cplusplus
extern "C" { /* } */
#endif
/**************************************************
*
* Generated objects for Module NCBI-Macro
* Generated using ASNCODE Revision: 6.17 at Jul 12, 2011 12:37 PM
*
**************************************************/
NLM_EXTERN Boolean LIBCALL
objmacroAsnLoad PROTO((void));
/**************************************************
*
* AECRAction
*
**************************************************/
typedef struct struct_AECR_action {
ValNodePtr action;
Uint1 also_change_mrna;
ValNodePtr constraint;
} AECRAction, PNTR AECRActionPtr;
NLM_EXTERN AECRActionPtr LIBCALL AECRActionFree PROTO ((AECRActionPtr ));
NLM_EXTERN AECRActionPtr LIBCALL AECRActionNew PROTO (( void ));
NLM_EXTERN AECRActionPtr LIBCALL AECRActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AECRActionAsnWrite PROTO (( AECRActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ParseAction
*
**************************************************/
typedef struct struct_Parse_action {
struct struct_Text_portion PNTR portion;
ValNodePtr src;
ValNodePtr dest;
Uint2 capitalization;
Uint1 remove_from_parsed;
ValNodePtr transform;
Uint2 existing_text;
} ParseAction, PNTR ParseActionPtr;
NLM_EXTERN ParseActionPtr LIBCALL ParseActionFree PROTO ((ParseActionPtr ));
NLM_EXTERN ParseActionPtr LIBCALL ParseActionNew PROTO (( void ));
NLM_EXTERN ParseActionPtr LIBCALL ParseActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseActionAsnWrite PROTO (( ParseActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MacroActionList
*
**************************************************/
typedef ValNode MacroActionList;
typedef ValNodePtr MacroActionListPtr;
#define MacroActionListNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListFree PROTO ((MacroActionListPtr ));
NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListNew PROTO (( void ));
NLM_EXTERN MacroActionListPtr LIBCALL MacroActionListAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MacroActionListAsnWrite PROTO (( MacroActionListPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/**************************************************
*
* SuspectRuleSet
*
**************************************************/
typedef struct struct_Suspect_rule SuspectRuleSet;
typedef struct struct_Suspect_rule PNTR SuspectRuleSetPtr;
#define SuspectRuleSetNew() Suspect_ruleNew()
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN SuspectRuleSetPtr LIBCALL SuspectRuleSetFree PROTO ((SuspectRuleSetPtr ));
NLM_EXTERN SuspectRuleSetPtr LIBCALL SuspectRuleSetNew PROTO (( void ));
NLM_EXTERN SuspectRuleSetPtr LIBCALL SuspectRuleSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SuspectRuleSetAsnWrite PROTO (( SuspectRuleSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/* following #defines are for enumerated type, not used by object loaders */
#define String_location_contains 1
#define String_location_equals 2
#define String_location_starts 3
#define String_location_ends 4
#define String_location_inlist 5
/**************************************************
*
* WordSubstitution
*
**************************************************/
typedef struct struct_Word_substitution {
struct struct_Word_substitution PNTR next;
CharPtr word;
ValNodePtr synonyms;
Uint1 case_sensitive;
Uint1 whole_word;
} WordSubstitution, PNTR WordSubstitutionPtr;
NLM_EXTERN WordSubstitutionPtr LIBCALL WordSubstitutionFree PROTO ((WordSubstitutionPtr ));
NLM_EXTERN WordSubstitutionPtr LIBCALL WordSubstitutionNew PROTO (( void ));
NLM_EXTERN WordSubstitutionPtr LIBCALL WordSubstitutionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL WordSubstitutionAsnWrite PROTO (( WordSubstitutionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* WordSubstitutionSet
*
**************************************************/
typedef struct struct_Word_substitution WordSubstitutionSet;
typedef struct struct_Word_substitution PNTR WordSubstitutionSetPtr;
#define WordSubstitutionSetNew() Word_substitutionNew()
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN WordSubstitutionSetPtr LIBCALL WordSubstitutionSetFree PROTO ((WordSubstitutionSetPtr ));
NLM_EXTERN WordSubstitutionSetPtr LIBCALL WordSubstitutionSetNew PROTO (( void ));
NLM_EXTERN WordSubstitutionSetPtr LIBCALL WordSubstitutionSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL WordSubstitutionSetAsnWrite PROTO (( WordSubstitutionSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/**************************************************
*
* StringConstraint
*
**************************************************/
typedef struct struct_String_constraint {
struct struct_String_constraint PNTR next;
CharPtr match_text;
Uint2 match_location;
Uint1 case_sensitive;
Uint1 ignore_space;
Uint1 ignore_punct;
struct struct_Word_substitution PNTR ignore_words;
Uint1 whole_word;
Uint1 not_present;
Uint1 is_all_caps;
Uint1 is_all_lower;
Uint1 is_all_punct;
Uint1 ignore_weasel;
} StringConstraint, PNTR StringConstraintPtr;
NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintFree PROTO ((StringConstraintPtr ));
NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintNew PROTO (( void ));
NLM_EXTERN StringConstraintPtr LIBCALL StringConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL StringConstraintAsnWrite PROTO (( StringConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* StringConstraintSet
*
**************************************************/
typedef struct struct_String_constraint StringConstraintSet;
typedef struct struct_String_constraint PNTR StringConstraintSetPtr;
#define StringConstraintSetNew() String_constraintNew()
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN StringConstraintSetPtr LIBCALL StringConstraintSetFree PROTO ((StringConstraintSetPtr ));
NLM_EXTERN StringConstraintSetPtr LIBCALL StringConstraintSetNew PROTO (( void ));
NLM_EXTERN StringConstraintSetPtr LIBCALL StringConstraintSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL StringConstraintSetAsnWrite PROTO (( StringConstraintSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/* following #defines are for enumerated type, not used by object loaders */
#define Strand_constraint_any 0
#define Strand_constraint_plus 1
#define Strand_constraint_minus 2
/* following #defines are for enumerated type, not used by object loaders */
#define Seqtype_constraint_any 0
#define Seqtype_constraint_nuc 1
#define Seqtype_constraint_prot 2
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_constraint_either 0
#define Partial_constraint_partial 1
#define Partial_constraint_complete 2
/* following #defines are for enumerated type, not used by object loaders */
#define Location_type_constraint_any 0
#define Location_type_constraint_single_interval 1
#define Location_type_constraint_joined 2
#define Location_type_constraint_ordered 3
typedef ValNodePtr LocationPosConstraintPtr;
typedef ValNode LocationPosConstraint;
#define LocationPosConstraint_dist_from_end 1
#define LocationPosConstraint_max_dist_from_end 2
#define LocationPosConstraint_min_dist_from_end 3
NLM_EXTERN LocationPosConstraintPtr LIBCALL LocationPosConstraintFree PROTO ((LocationPosConstraintPtr ));
NLM_EXTERN LocationPosConstraintPtr LIBCALL LocationPosConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationPosConstraintAsnWrite PROTO (( LocationPosConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* LocationConstraint
*
**************************************************/
typedef struct struct_Location_constraint {
Uint2 strand;
Uint2 seq_type;
Uint2 partial5;
Uint2 partial3;
Uint2 location_type;
ValNodePtr end5;
ValNodePtr end3;
} LocationConstraint, PNTR LocationConstraintPtr;
NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintFree PROTO ((LocationConstraintPtr ));
NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintNew PROTO (( void ));
NLM_EXTERN LocationConstraintPtr LIBCALL LocationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationConstraintAsnWrite PROTO (( LocationConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Object_type_constraint_any 0
#define Object_type_constraint_feature 1
#define Object_type_constraint_descriptor 2
/* following #defines are for enumerated type, not used by object loaders */
#define Macro_feature_type_any 0
#define Macro_feature_type_gene 1
#define Macro_feature_type_org 2
#define Macro_feature_type_cds 3
#define Macro_feature_type_prot 4
#define Macro_feature_type_preRNA 5
#define Macro_feature_type_mRNA 6
#define Macro_feature_type_tRNA 7
#define Macro_feature_type_rRNA 8
#define Macro_feature_type_snRNA 9
#define Macro_feature_type_scRNA 10
#define Macro_feature_type_otherRNA 11
#define Macro_feature_type_pub 12
#define Macro_feature_type_seq 13
#define Macro_feature_type_imp 14
#define Macro_feature_type_allele 15
#define Macro_feature_type_attenuator 16
#define Macro_feature_type_c_region 17
#define Macro_feature_type_caat_signal 18
#define Macro_feature_type_imp_CDS 19
#define Macro_feature_type_conflict 20
#define Macro_feature_type_d_loop 21
#define Macro_feature_type_d_segment 22
#define Macro_feature_type_enhancer 23
#define Macro_feature_type_exon 24
#define Macro_feature_type_gC_signal 25
#define Macro_feature_type_iDNA 26
#define Macro_feature_type_intron 27
#define Macro_feature_type_j_segment 28
#define Macro_feature_type_ltr 29
#define Macro_feature_type_mat_peptide 30
#define Macro_feature_type_misc_binding 31
#define Macro_feature_type_misc_difference 32
#define Macro_feature_type_misc_feature 33
#define Macro_feature_type_misc_recomb 34
#define Macro_feature_type_misc_RNA 35
#define Macro_feature_type_misc_signal 36
#define Macro_feature_type_misc_structure 37
#define Macro_feature_type_modified_base 38
#define Macro_feature_type_mutation 39
#define Macro_feature_type_n_region 40
#define Macro_feature_type_old_sequence 41
#define Macro_feature_type_polyA_signal 42
#define Macro_feature_type_polyA_site 43
#define Macro_feature_type_precursor_RNA 44
#define Macro_feature_type_prim_transcript 45
#define Macro_feature_type_primer_bind 46
#define Macro_feature_type_promoter 47
#define Macro_feature_type_protein_bind 48
#define Macro_feature_type_rbs 49
#define Macro_feature_type_repeat_region 50
#define Macro_feature_type_rep_origin 51
#define Macro_feature_type_s_region 52
#define Macro_feature_type_sig_peptide 53
#define Macro_feature_type_source 54
#define Macro_feature_type_stem_loop 55
#define Macro_feature_type_sts 56
#define Macro_feature_type_tata_signal 57
#define Macro_feature_type_terminator 58
#define Macro_feature_type_transit_peptide 59
#define Macro_feature_type_unsure 60
#define Macro_feature_type_v_region 61
#define Macro_feature_type_v_segment 62
#define Macro_feature_type_variation 63
#define Macro_feature_type_virion 64
#define Macro_feature_type_n3clip 65
#define Macro_feature_type_n3UTR 66
#define Macro_feature_type_n5clip 67
#define Macro_feature_type_n5UTR 68
#define Macro_feature_type_n10_signal 69
#define Macro_feature_type_n35_signal 70
#define Macro_feature_type_site_ref 71
#define Macro_feature_type_region 72
#define Macro_feature_type_comment 73
#define Macro_feature_type_bond 74
#define Macro_feature_type_site 75
#define Macro_feature_type_rsite 76
#define Macro_feature_type_user 77
#define Macro_feature_type_txinit 78
#define Macro_feature_type_num 79
#define Macro_feature_type_psec_str 80
#define Macro_feature_type_non_std_residue 81
#define Macro_feature_type_het 82
#define Macro_feature_type_biosrc 83
#define Macro_feature_type_preprotein 84
#define Macro_feature_type_mat_peptide_aa 85
#define Macro_feature_type_sig_peptide_aa 86
#define Macro_feature_type_transit_peptide_aa 87
#define Macro_feature_type_snoRNA 88
#define Macro_feature_type_gap 89
#define Macro_feature_type_operon 90
#define Macro_feature_type_oriT 91
#define Macro_feature_type_ncRNA 92
#define Macro_feature_type_tmRNA 93
#define Macro_feature_type_mobile_element 94
/* following #defines are for enumerated type, not used by object loaders */
#define Feat_qual_legal_allele 1
#define Feat_qual_legal_activity 2
#define Feat_qual_legal_anticodon 3
#define Feat_qual_legal_bound_moiety 4
#define Feat_qual_legal_chromosome 5
#define Feat_qual_legal_citation 6
#define Feat_qual_legal_codon 7
#define Feat_qual_legal_codon_start 8
#define Feat_qual_legal_codons_recognized 9
#define Feat_qual_legal_compare 10
#define Feat_qual_legal_cons_splice 11
#define Feat_qual_legal_db_xref 12
#define Feat_qual_legal_description 13
#define Feat_qual_legal_direction 14
#define Feat_qual_legal_ec_number 15
#define Feat_qual_legal_environmental_sample 16
#define Feat_qual_legal_evidence 17
#define Feat_qual_legal_exception 18
#define Feat_qual_legal_experiment 19
#define Feat_qual_legal_focus 20
#define Feat_qual_legal_frequency 21
#define Feat_qual_legal_function 22
#define Feat_qual_legal_gene 23
#define Feat_qual_legal_gene_description 24
#define Feat_qual_legal_inference 25
#define Feat_qual_legal_label 26
#define Feat_qual_legal_locus_tag 27
#define Feat_qual_legal_map 28
#define Feat_qual_legal_mobile_element 29
#define Feat_qual_legal_mod_base 30
#define Feat_qual_legal_mol_type 31
#define Feat_qual_legal_ncRNA_class 32
#define Feat_qual_legal_note 33
#define Feat_qual_legal_number 34
#define Feat_qual_legal_old_locus_tag 35
#define Feat_qual_legal_operon 36
#define Feat_qual_legal_organism 37
#define Feat_qual_legal_organelle 38
#define Feat_qual_legal_partial 39
#define Feat_qual_legal_phenotype 40
#define Feat_qual_legal_plasmid 41
#define Feat_qual_legal_product 42
#define Feat_qual_legal_protein_id 43
#define Feat_qual_legal_pseudo 44
#define Feat_qual_legal_rearranged 45
#define Feat_qual_legal_replace 46
#define Feat_qual_legal_rpt_family 47
#define Feat_qual_legal_rpt_type 48
#define Feat_qual_legal_rpt_unit 49
#define Feat_qual_legal_rpt_unit_seq 50
#define Feat_qual_legal_rpt_unit_range 51
#define Feat_qual_legal_segment 52
#define Feat_qual_legal_sequenced_mol 53
#define Feat_qual_legal_standard_name 54
#define Feat_qual_legal_synonym 55
#define Feat_qual_legal_transcript_id 56
#define Feat_qual_legal_transgenic 57
#define Feat_qual_legal_translation 58
#define Feat_qual_legal_transl_except 59
#define Feat_qual_legal_transl_table 60
#define Feat_qual_legal_usedin 61
#define Feat_qual_legal_mobile_element_type 62
#define Feat_qual_legal_mobile_element_name 63
#define Feat_qual_legal_gene_comment 64
#define Feat_qual_legal_satellite 65
#define Feat_qual_legal_satellite_type 66
#define Feat_qual_legal_satellite_name 67
#define Feat_qual_legal_location 68
#define Feat_qual_legal_tag_peptide 69
#define Feat_qual_legal_mobile_element_type_type 70
#define Feat_qual_legal_name 71
/**************************************************
*
* FeatQualLegalVal
*
**************************************************/
typedef struct struct_Feat_qual_legal_val {
Uint2 qual;
CharPtr val;
} FeatQualLegalVal, PNTR FeatQualLegalValPtr;
NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValFree PROTO ((FeatQualLegalValPtr ));
NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValNew PROTO (( void ));
NLM_EXTERN FeatQualLegalValPtr LIBCALL FeatQualLegalValAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatQualLegalValAsnWrite PROTO (( FeatQualLegalValPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FeatQualLegalValChoicePtr;
typedef ValNode FeatQualLegalValChoice;
#define FeatQualLegalValChoice_qual 1
NLM_EXTERN FeatQualLegalValChoicePtr LIBCALL FeatQualLegalValChoiceFree PROTO ((FeatQualLegalValChoicePtr ));
NLM_EXTERN FeatQualLegalValChoicePtr LIBCALL FeatQualLegalValChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatQualLegalValChoiceAsnWrite PROTO (( FeatQualLegalValChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FeatQualLegalSet
*
**************************************************/
typedef ValNode FeatQualLegalSet;
typedef ValNodePtr FeatQualLegalSetPtr;
#define FeatQualLegalSetNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetFree PROTO ((FeatQualLegalSetPtr ));
NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetNew PROTO (( void ));
NLM_EXTERN FeatQualLegalSetPtr LIBCALL FeatQualLegalSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatQualLegalSetAsnWrite PROTO (( FeatQualLegalSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
typedef ValNodePtr FeatQualChoicePtr;
typedef ValNode FeatQualChoice;
#define FeatQualChoice_legal_qual 1
#define FeatQualChoice_illegal_qual 2
NLM_EXTERN FeatQualChoicePtr LIBCALL FeatQualChoiceFree PROTO ((FeatQualChoicePtr ));
NLM_EXTERN FeatQualChoicePtr LIBCALL FeatQualChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatQualChoiceAsnWrite PROTO (( FeatQualChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FeatureField
*
**************************************************/
typedef struct struct_Feature_field {
Uint2 type;
ValNodePtr field;
} FeatureField, PNTR FeatureFieldPtr;
NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldFree PROTO ((FeatureFieldPtr ));
NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldNew PROTO (( void ));
NLM_EXTERN FeatureFieldPtr LIBCALL FeatureFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatureFieldAsnWrite PROTO (( FeatureFieldPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FeatureFieldLegal
*
**************************************************/
typedef struct struct_Feature_field_legal {
Uint2 type;
Uint2 field;
} FeatureFieldLegal, PNTR FeatureFieldLegalPtr;
NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalFree PROTO ((FeatureFieldLegalPtr ));
NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalNew PROTO (( void ));
NLM_EXTERN FeatureFieldLegalPtr LIBCALL FeatureFieldLegalAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatureFieldLegalAsnWrite PROTO (( FeatureFieldLegalPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FeatureFieldPair
*
**************************************************/
typedef struct struct_Feature_field_pair {
Uint2 type;
ValNodePtr field_from;
ValNodePtr field_to;
} FeatureFieldPair, PNTR FeatureFieldPairPtr;
NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairFree PROTO ((FeatureFieldPairPtr ));
NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairNew PROTO (( void ));
NLM_EXTERN FeatureFieldPairPtr LIBCALL FeatureFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FeatureFieldPairAsnWrite PROTO (( FeatureFieldPairPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr RnaFeatTypePtr;
typedef ValNode RnaFeatType;
#define RnaFeatType_any 1
#define RnaFeatType_preRNA 2
#define RnaFeatType_mRNA 3
#define RnaFeatType_tRNA 4
#define RnaFeatType_rRNA 5
#define RnaFeatType_ncRNA 6
#define RnaFeatType_tmRNA 7
#define RnaFeatType_miscRNA 8
NLM_EXTERN RnaFeatTypePtr LIBCALL RnaFeatTypeFree PROTO ((RnaFeatTypePtr ));
NLM_EXTERN RnaFeatTypePtr LIBCALL RnaFeatTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RnaFeatTypeAsnWrite PROTO (( RnaFeatTypePtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Rna_field_product 1
#define Rna_field_comment 2
#define Rna_field_codons_recognized 3
#define Rna_field_ncrna_class 4
#define Rna_field_anticodon 5
#define Rna_field_transcript_id 6
#define Rna_field_gene_locus 7
#define Rna_field_gene_description 8
#define Rna_field_gene_maploc 9
#define Rna_field_gene_locus_tag 10
#define Rna_field_gene_synonym 11
#define Rna_field_gene_comment 12
#define Rna_field_tag_peptide 13
/**************************************************
*
* RnaQual
*
**************************************************/
typedef struct struct_Rna_qual {
ValNodePtr type;
Uint2 field;
} RnaQual, PNTR RnaQualPtr;
NLM_EXTERN RnaQualPtr LIBCALL RnaQualFree PROTO ((RnaQualPtr ));
NLM_EXTERN RnaQualPtr LIBCALL RnaQualNew PROTO (( void ));
NLM_EXTERN RnaQualPtr LIBCALL RnaQualAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RnaQualAsnWrite PROTO (( RnaQualPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RnaQualPair
*
**************************************************/
typedef struct struct_Rna_qual_pair {
ValNodePtr type;
Uint2 field_from;
Uint2 field_to;
} RnaQualPair, PNTR RnaQualPairPtr;
NLM_EXTERN RnaQualPairPtr LIBCALL RnaQualPairFree PROTO ((RnaQualPairPtr ));
NLM_EXTERN RnaQualPairPtr LIBCALL RnaQualPairNew PROTO (( void ));
NLM_EXTERN RnaQualPairPtr LIBCALL RnaQualPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RnaQualPairAsnWrite PROTO (( RnaQualPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Source_qual_acronym 1
#define Source_qual_anamorph 2
#define Source_qual_authority 3
#define Source_qual_bio_material 4
#define Source_qual_biotype 5
#define Source_qual_biovar 6
#define Source_qual_breed 7
#define Source_qual_cell_line 8
#define Source_qual_cell_type 9
#define Source_qual_chemovar 10
#define Source_qual_chromosome 11
#define Source_qual_clone 12
#define Source_qual_clone_lib 13
#define Source_qual_collected_by 14
#define Source_qual_collection_date 15
#define Source_qual_common 16
#define Source_qual_common_name 17
#define Source_qual_country 18
#define Source_qual_cultivar 19
#define Source_qual_culture_collection 20
#define Source_qual_dev_stage 21
#define Source_qual_division 22
#define Source_qual_dosage 23
#define Source_qual_ecotype 24
#define Source_qual_endogenous_virus_name 25
#define Source_qual_environmental_sample 26
#define Source_qual_forma 27
#define Source_qual_forma_specialis 28
#define Source_qual_frequency 29
#define Source_qual_fwd_primer_name 30
#define Source_qual_fwd_primer_seq 31
#define Source_qual_gb_acronym 32
#define Source_qual_gb_anamorph 33
#define Source_qual_gb_synonym 34
#define Source_qual_genotype 35
#define Source_qual_germline 36
#define Source_qual_group 37
#define Source_qual_haplotype 38
#define Source_qual_identified_by 39
#define Source_qual_insertion_seq_name 40
#define Source_qual_isolate 41
#define Source_qual_isolation_source 42
#define Source_qual_lab_host 43
#define Source_qual_lat_lon 44
#define Source_qual_lineage 45
#define Source_qual_map 46
#define Source_qual_metagenome_source 47
#define Source_qual_metagenomic 48
#define Source_qual_old_lineage 49
#define Source_qual_old_name 50
#define Source_qual_orgmod_note 51
#define Source_qual_nat_host 52
#define Source_qual_pathovar 53
#define Source_qual_plasmid_name 54
#define Source_qual_plastid_name 55
#define Source_qual_pop_variant 56
#define Source_qual_rearranged 57
#define Source_qual_rev_primer_name 58
#define Source_qual_rev_primer_seq 59
#define Source_qual_segment 60
#define Source_qual_serogroup 61
#define Source_qual_serotype 62
#define Source_qual_serovar 63
#define Source_qual_sex 64
#define Source_qual_specimen_voucher 65
#define Source_qual_strain 66
#define Source_qual_subclone 67
#define Source_qual_subgroup 68
#define Source_qual_subsource_note 69
#define Source_qual_sub_species 70
#define Source_qual_substrain 71
#define Source_qual_subtype 72
#define Source_qual_synonym 73
#define Source_qual_taxname 74
#define Source_qual_teleomorph 75
#define Source_qual_tissue_lib 76
#define Source_qual_tissue_type 77
#define Source_qual_transgenic 78
#define Source_qual_transposon_name 79
#define Source_qual_type 80
#define Source_qual_variety 81
#define Source_qual_specimen_voucher_INST 82
#define Source_qual_specimen_voucher_COLL 83
#define Source_qual_specimen_voucher_SpecID 84
#define Source_qual_culture_collection_INST 85
#define Source_qual_culture_collection_COLL 86
#define Source_qual_culture_collection_SpecID 87
#define Source_qual_bio_material_INST 88
#define Source_qual_bio_material_COLL 89
#define Source_qual_bio_material_SpecID 90
#define Source_qual_all_notes 91
#define Source_qual_mating_type 92
#define Source_qual_linkage_group 93
#define Source_qual_haplogroup 94
#define Source_qual_all_quals 95
#define Source_qual_dbxref 96
#define Source_qual_taxid 97
/**************************************************
*
* SourceQualPair
*
**************************************************/
typedef struct struct_Source_qual_pair {
Uint2 field_from;
Uint2 field_to;
} SourceQualPair, PNTR SourceQualPairPtr;
NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairFree PROTO ((SourceQualPairPtr ));
NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairNew PROTO (( void ));
NLM_EXTERN SourceQualPairPtr LIBCALL SourceQualPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualPairAsnWrite PROTO (( SourceQualPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Source_location_unknown 0
#define Source_location_genomic 1
#define Source_location_chloroplast 2
#define Source_location_chromoplast 3
#define Source_location_kinetoplast 4
#define Source_location_mitochondrion 5
#define Source_location_plastid 6
#define Source_location_macronuclear 7
#define Source_location_extrachrom 8
#define Source_location_plasmid 9
#define Source_location_transposon 10
#define Source_location_insertion_seq 11
#define Source_location_cyanelle 12
#define Source_location_proviral 13
#define Source_location_virion 14
#define Source_location_nucleomorph 15
#define Source_location_apicoplast 16
#define Source_location_leucoplast 17
#define Source_location_proplastid 18
#define Source_location_endogenous_virus 19
#define Source_location_hydrogenosome 20
#define Source_location_chromosome 21
#define Source_location_chromatophore 22
/* following #defines are for enumerated type, not used by object loaders */
#define Source_origin_unknown 0
#define Source_origin_natural 1
#define Source_origin_natmut 2
#define Source_origin_mut 3
#define Source_origin_artificial 4
#define Source_origin_synthetic 5
#define Source_origin_other 255
typedef ValNodePtr SourceQualChoicePtr;
typedef ValNode SourceQualChoice;
#define SourceQualChoice_textqual 1
#define SourceQualChoice_location 2
#define SourceQualChoice_origin 3
#define SourceQualChoice_gcode 4
#define SourceQualChoice_mgcode 5
NLM_EXTERN SourceQualChoicePtr LIBCALL SourceQualChoiceFree PROTO ((SourceQualChoicePtr ));
NLM_EXTERN SourceQualChoicePtr LIBCALL SourceQualChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualChoiceAsnWrite PROTO (( SourceQualChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SourceQualTextVal
*
**************************************************/
typedef struct struct_Source_qual_text_val {
Uint2 srcqual;
CharPtr val;
} SourceQualTextVal, PNTR SourceQualTextValPtr;
NLM_EXTERN SourceQualTextValPtr LIBCALL SourceQualTextValFree PROTO ((SourceQualTextValPtr ));
NLM_EXTERN SourceQualTextValPtr LIBCALL SourceQualTextValNew PROTO (( void ));
NLM_EXTERN SourceQualTextValPtr LIBCALL SourceQualTextValAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualTextValAsnWrite PROTO (( SourceQualTextValPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr SourceQualValChoicePtr;
typedef ValNode SourceQualValChoice;
#define SourceQualValChoice_textqual 1
#define SourceQualValChoice_location 2
#define SourceQualValChoice_origin 3
#define SourceQualValChoice_gcode 4
#define SourceQualValChoice_mgcode 5
NLM_EXTERN SourceQualValChoicePtr LIBCALL SourceQualValChoiceFree PROTO ((SourceQualValChoicePtr ));
NLM_EXTERN SourceQualValChoicePtr LIBCALL SourceQualValChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualValChoiceAsnWrite PROTO (( SourceQualValChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SourceQualValSet
*
**************************************************/
typedef ValNode SourceQualValSet;
typedef ValNodePtr SourceQualValSetPtr;
#define SourceQualValSetNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN SourceQualValSetPtr LIBCALL SourceQualValSetFree PROTO ((SourceQualValSetPtr ));
NLM_EXTERN SourceQualValSetPtr LIBCALL SourceQualValSetNew PROTO (( void ));
NLM_EXTERN SourceQualValSetPtr LIBCALL SourceQualValSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceQualValSetAsnWrite PROTO (( SourceQualValSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/* following #defines are for enumerated type, not used by object loaders */
#define CDSGeneProt_field_cds_comment 1
#define CDSGeneProt_field_gene_locus 2
#define CDSGeneProt_field_gene_description 3
#define CDSGeneProt_field_gene_comment 4
#define CDSGeneProt_field_gene_allele 5
#define CDSGeneProt_field_gene_maploc 6
#define CDSGeneProt_field_gene_locus_tag 7
#define CDSGeneProt_field_gene_synonym 8
#define CDSGeneProt_field_gene_old_locus_tag 9
#define CDSGeneProt_field_mrna_product 10
#define CDSGeneProt_field_mrna_comment 11
#define CDSGeneProt_field_prot_name 12
#define CDSGeneProt_field_prot_description 13
#define CDSGeneProt_field_prot_ec_number 14
#define CDSGeneProt_field_prot_activity 15
#define CDSGeneProt_field_prot_comment 16
#define CDSGeneProt_field_mat_peptide_name 17
#define CDSGeneProt_field_mat_peptide_description 18
#define CDSGeneProt_field_mat_peptide_ec_number 19
#define CDSGeneProt_field_mat_peptide_activity 20
#define CDSGeneProt_field_mat_peptide_comment 21
#define CDSGeneProt_field_cds_inference 22
#define CDSGeneProt_field_gene_inference 23
#define CDSGeneProt_field_codon_start 24
/**************************************************
*
* CDSGeneProtFieldPair
*
**************************************************/
typedef struct struct_CDSGeneProt_field_pair {
Uint2 field_from;
Uint2 field_to;
} CDSGeneProtFieldPair, PNTR CDSGeneProtFieldPairPtr;
NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairFree PROTO ((CDSGeneProtFieldPairPtr ));
NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairNew PROTO (( void ));
NLM_EXTERN CDSGeneProtFieldPairPtr LIBCALL CDSGeneProtFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CDSGeneProtFieldPairAsnWrite PROTO (( CDSGeneProtFieldPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Molecule_type_unknown 0
#define Molecule_type_genomic 1
#define Molecule_type_precursor_RNA 2
#define Molecule_type_mRNA 3
#define Molecule_type_rRNA 4
#define Molecule_type_tRNA 5
#define Molecule_type_genomic_mRNA 6
#define Molecule_type_cRNA 7
#define Molecule_type_transcribed_RNA 8
#define Molecule_type_ncRNA 9
#define Molecule_type_transfer_messenger_RNA 10
#define Molecule_type_macro_other 11
/* following #defines are for enumerated type, not used by object loaders */
#define Technique_type_unknown 0
#define Technique_type_standard 1
#define Technique_type_est 2
#define Technique_type_sts 3
#define Technique_type_survey 4
#define Technique_type_genetic_map 5
#define Technique_type_physical_map 6
#define Technique_type_derived 7
#define Technique_type_concept_trans 8
#define Technique_type_seq_pept 9
#define Technique_type_both 10
#define Technique_type_seq_pept_overlap 11
#define Technique_type_seq_pept_homol 12
#define Technique_type_concept_trans_a 13
#define Technique_type_htgs_1 14
#define Technique_type_htgs_2 15
#define Technique_type_htgs_3 16
#define Technique_type_fli_cDNA 17
#define Technique_type_htgs_0 18
#define Technique_type_htc 19
#define Technique_type_wgs 20
#define Technique_type_barcode 21
#define Technique_type_composite_wgs_htgs 22
#define Technique_type_tsa 23
#define Technique_type_other 24
/* following #defines are for enumerated type, not used by object loaders */
#define Completedness_type_unknown 0
#define Completedness_type_complete 1
#define Completedness_type_partial 2
#define Completedness_type_no_left 3
#define Completedness_type_no_right 4
#define Completedness_type_no_ends 5
#define Completedness_type_has_left 6
#define Completedness_type_has_right 7
#define Completedness_type_other 6
/* following #defines are for enumerated type, not used by object loaders */
#define Molecule_class_type_unknown 0
#define Molecule_class_type_dna 1
#define Molecule_class_type_rna 2
#define Molecule_class_type_protein 3
#define Molecule_class_type_nucleotide 4
#define Molecule_class_type_other 5
/* following #defines are for enumerated type, not used by object loaders */
#define Topology_type_unknown 0
#define Topology_type_linear 1
#define Topology_type_circular 2
#define Topology_type_tandem 3
#define Topology_type_other 4
/* following #defines are for enumerated type, not used by object loaders */
#define Strand_type_unknown 0
#define Strand_type_single 1
#define Strand_type_double__ 2
#define Strand_type_mixed 3
#define Strand_type_mixed_rev 4
#define Strand_type_other 5
typedef ValNodePtr MolinfoFieldPtr;
typedef ValNode MolinfoField;
#define MolinfoField_molecule 1
#define MolinfoField_technique 2
#define MolinfoField_completedness 3
#define MolinfoField_mol_class 4
#define MolinfoField_topology 5
#define MolinfoField_strand 6
NLM_EXTERN MolinfoFieldPtr LIBCALL MolinfoFieldFree PROTO ((MolinfoFieldPtr ));
NLM_EXTERN MolinfoFieldPtr LIBCALL MolinfoFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoFieldAsnWrite PROTO (( MolinfoFieldPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoMoleculePair
*
**************************************************/
typedef struct struct_Molinfo_molecule_pair {
Uint2 from;
Uint2 to;
} MolinfoMoleculePair, PNTR MolinfoMoleculePairPtr;
NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairFree PROTO ((MolinfoMoleculePairPtr ));
NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairNew PROTO (( void ));
NLM_EXTERN MolinfoMoleculePairPtr LIBCALL MolinfoMoleculePairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoMoleculePairAsnWrite PROTO (( MolinfoMoleculePairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoTechniquePair
*
**************************************************/
typedef struct struct_Molinfo_technique_pair {
Uint2 from;
Uint2 to;
} MolinfoTechniquePair, PNTR MolinfoTechniquePairPtr;
NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairFree PROTO ((MolinfoTechniquePairPtr ));
NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairNew PROTO (( void ));
NLM_EXTERN MolinfoTechniquePairPtr LIBCALL MolinfoTechniquePairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoTechniquePairAsnWrite PROTO (( MolinfoTechniquePairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoCompletednessPair
*
**************************************************/
typedef struct struct_Molinfo_completedness_pair {
Uint2 from;
Uint2 to;
} MolinfoCompletednessPair, PNTR MolinfoCompletednessPairPtr;
NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairFree PROTO ((MolinfoCompletednessPairPtr ));
NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairNew PROTO (( void ));
NLM_EXTERN MolinfoCompletednessPairPtr LIBCALL MolinfoCompletednessPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoCompletednessPairAsnWrite PROTO (( MolinfoCompletednessPairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoMolClassPair
*
**************************************************/
typedef struct struct_Molinfo_mol_class_pair {
Uint2 from;
Uint2 to;
} MolinfoMolClassPair, PNTR MolinfoMolClassPairPtr;
NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairFree PROTO ((MolinfoMolClassPairPtr ));
NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairNew PROTO (( void ));
NLM_EXTERN MolinfoMolClassPairPtr LIBCALL MolinfoMolClassPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoMolClassPairAsnWrite PROTO (( MolinfoMolClassPairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoTopologyPair
*
**************************************************/
typedef struct struct_Molinfo_topology_pair {
Uint2 from;
Uint2 to;
} MolinfoTopologyPair, PNTR MolinfoTopologyPairPtr;
NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairFree PROTO ((MolinfoTopologyPairPtr ));
NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairNew PROTO (( void ));
NLM_EXTERN MolinfoTopologyPairPtr LIBCALL MolinfoTopologyPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoTopologyPairAsnWrite PROTO (( MolinfoTopologyPairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoStrandPair
*
**************************************************/
typedef struct struct_Molinfo_strand_pair {
Uint2 from;
Uint2 to;
} MolinfoStrandPair, PNTR MolinfoStrandPairPtr;
NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairFree PROTO ((MolinfoStrandPairPtr ));
NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairNew PROTO (( void ));
NLM_EXTERN MolinfoStrandPairPtr LIBCALL MolinfoStrandPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoStrandPairAsnWrite PROTO (( MolinfoStrandPairPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr MolinfoFieldPairPtr;
typedef ValNode MolinfoFieldPair;
#define MolinfoFieldPair_molecule 1
#define MolinfoFieldPair_technique 2
#define MolinfoFieldPair_completedness 3
#define MolinfoFieldPair_mol_class 4
#define MolinfoFieldPair_topology 5
#define MolinfoFieldPair_strand 6
NLM_EXTERN MolinfoFieldPairPtr LIBCALL MolinfoFieldPairFree PROTO ((MolinfoFieldPairPtr ));
NLM_EXTERN MolinfoFieldPairPtr LIBCALL MolinfoFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoFieldPairAsnWrite PROTO (( MolinfoFieldPairPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoFieldList
*
**************************************************/
typedef ValNode MolinfoFieldList;
typedef ValNodePtr MolinfoFieldListPtr;
#define MolinfoFieldListNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN MolinfoFieldListPtr LIBCALL MolinfoFieldListFree PROTO ((MolinfoFieldListPtr ));
NLM_EXTERN MolinfoFieldListPtr LIBCALL MolinfoFieldListNew PROTO (( void ));
NLM_EXTERN MolinfoFieldListPtr LIBCALL MolinfoFieldListAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoFieldListAsnWrite PROTO (( MolinfoFieldListPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/**************************************************
*
* MolinfoFieldConstraint
*
**************************************************/
typedef struct struct_Molinfo_field_constraint {
ValNodePtr field;
Uint1 is_not;
} MolinfoFieldConstraint, PNTR MolinfoFieldConstraintPtr;
NLM_EXTERN MolinfoFieldConstraintPtr LIBCALL MolinfoFieldConstraintFree PROTO ((MolinfoFieldConstraintPtr ));
NLM_EXTERN MolinfoFieldConstraintPtr LIBCALL MolinfoFieldConstraintNew PROTO (( void ));
NLM_EXTERN MolinfoFieldConstraintPtr LIBCALL MolinfoFieldConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoFieldConstraintAsnWrite PROTO (( MolinfoFieldConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Publication_field_cit 1
#define Publication_field_authors 2
#define Publication_field_journal 3
#define Publication_field_volume 4
#define Publication_field_issue 5
#define Publication_field_pages 6
#define Publication_field_date 7
#define Publication_field_serial_number 8
#define Publication_field_title 9
#define Publication_field_affiliation 10
#define Publication_field_affil_div 11
#define Publication_field_affil_city 12
#define Publication_field_affil_sub 13
#define Publication_field_affil_country 14
#define Publication_field_affil_street 15
#define Publication_field_affil_email 16
#define Publication_field_affil_fax 17
#define Publication_field_affil_phone 18
#define Publication_field_affil_zipcode 19
#define Publication_field_authors_initials 20
typedef ValNodePtr StructuredCommentFieldPtr;
typedef ValNode StructuredCommentField;
#define StructuredCommentField_database 1
#define StructuredCommentField_named 2
#define StructuredCommentField_field_name 3
NLM_EXTERN StructuredCommentFieldPtr LIBCALL StructuredCommentFieldFree PROTO ((StructuredCommentFieldPtr ));
NLM_EXTERN StructuredCommentFieldPtr LIBCALL StructuredCommentFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL StructuredCommentFieldAsnWrite PROTO (( StructuredCommentFieldPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* StructuredCommentFieldPair
*
**************************************************/
typedef struct struct_Structured_comment_field_pair {
ValNodePtr from;
ValNodePtr to;
} StructuredCommentFieldPair, PNTR StructuredCommentFieldPairPtr;
NLM_EXTERN StructuredCommentFieldPairPtr LIBCALL StructuredCommentFieldPairFree PROTO ((StructuredCommentFieldPairPtr ));
NLM_EXTERN StructuredCommentFieldPairPtr LIBCALL StructuredCommentFieldPairNew PROTO (( void ));
NLM_EXTERN StructuredCommentFieldPairPtr LIBCALL StructuredCommentFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL StructuredCommentFieldPairAsnWrite PROTO (( StructuredCommentFieldPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Misc_field_genome_project_id 1
#define Misc_field_comment_descriptor 2
#define Misc_field_defline 3
#define Misc_field_keyword 4
/* following #defines are for enumerated type, not used by object loaders */
#define DBLink_field_type_trace_assembly 1
#define DBLink_field_type_bio_sample 2
#define DBLink_field_type_probe_db 3
#define DBLink_field_type_sequence_read_archve 4
/**************************************************
*
* DBLinkFieldPair
*
**************************************************/
typedef struct struct_DBLink_field_pair {
Uint2 from;
Uint2 to;
} DBLinkFieldPair, PNTR DBLinkFieldPairPtr;
NLM_EXTERN DBLinkFieldPairPtr LIBCALL DBLinkFieldPairFree PROTO ((DBLinkFieldPairPtr ));
NLM_EXTERN DBLinkFieldPairPtr LIBCALL DBLinkFieldPairNew PROTO (( void ));
NLM_EXTERN DBLinkFieldPairPtr LIBCALL DBLinkFieldPairAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL DBLinkFieldPairAsnWrite PROTO (( DBLinkFieldPairPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Pub_type_any 0
#define Pub_type_published 1
#define Pub_type_unpublished 2
#define Pub_type_in_press 3
#define Pub_type_submitter_block 4
/**************************************************
*
* PubFieldConstraint
*
**************************************************/
typedef struct struct_Pub_field_constraint {
Uint2 field;
struct struct_String_constraint PNTR constraint;
} PubFieldConstraint, PNTR PubFieldConstraintPtr;
NLM_EXTERN PubFieldConstraintPtr LIBCALL PubFieldConstraintFree PROTO ((PubFieldConstraintPtr ));
NLM_EXTERN PubFieldConstraintPtr LIBCALL PubFieldConstraintNew PROTO (( void ));
NLM_EXTERN PubFieldConstraintPtr LIBCALL PubFieldConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PubFieldConstraintAsnWrite PROTO (( PubFieldConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr PubFieldSpecialConstraintTypePtr;
typedef ValNode PubFieldSpecialConstraintType;
#define PubFieldSpecialConstraintType_is_present 1
#define PubFieldSpecialConstraintType_is_not_present 2
#define PubFieldSpecialConstraintType_is_all_caps 3
#define PubFieldSpecialConstraintType_is_all_lower 4
#define PubFieldSpecialConstraintType_is_all_punct 5
NLM_EXTERN PubFieldSpecialConstraintTypePtr LIBCALL PubFieldSpecialConstraintTypeFree PROTO ((PubFieldSpecialConstraintTypePtr ));
NLM_EXTERN PubFieldSpecialConstraintTypePtr LIBCALL PubFieldSpecialConstraintTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PubFieldSpecialConstraintTypeAsnWrite PROTO (( PubFieldSpecialConstraintTypePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* PubFieldSpecialConstraint
*
**************************************************/
typedef struct struct_Pub_field_special_constraint {
Uint2 field;
ValNodePtr constraint;
} PubFieldSpecialConstraint, PNTR PubFieldSpecialConstraintPtr;
NLM_EXTERN PubFieldSpecialConstraintPtr LIBCALL PubFieldSpecialConstraintFree PROTO ((PubFieldSpecialConstraintPtr ));
NLM_EXTERN PubFieldSpecialConstraintPtr LIBCALL PubFieldSpecialConstraintNew PROTO (( void ));
NLM_EXTERN PubFieldSpecialConstraintPtr LIBCALL PubFieldSpecialConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PubFieldSpecialConstraintAsnWrite PROTO (( PubFieldSpecialConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* PublicationConstraint
*
**************************************************/
typedef struct struct_Publication_constraint {
Uint2 type;
struct struct_Pub_field_constraint PNTR field;
struct struct_Pub_field_special_constraint PNTR special_field;
} PublicationConstraint, PNTR PublicationConstraintPtr;
NLM_EXTERN PublicationConstraintPtr LIBCALL PublicationConstraintFree PROTO ((PublicationConstraintPtr ));
NLM_EXTERN PublicationConstraintPtr LIBCALL PublicationConstraintNew PROTO (( void ));
NLM_EXTERN PublicationConstraintPtr LIBCALL PublicationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PublicationConstraintAsnWrite PROTO (( PublicationConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SourceConstraint
*
**************************************************/
typedef struct struct_Source_constraint {
ValNodePtr field1;
ValNodePtr field2;
struct struct_String_constraint PNTR constraint;
Uint2 type_constraint;
} SourceConstraint, PNTR SourceConstraintPtr;
NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintFree PROTO ((SourceConstraintPtr ));
NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintNew PROTO (( void ));
NLM_EXTERN SourceConstraintPtr LIBCALL SourceConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SourceConstraintAsnWrite PROTO (( SourceConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define CDSGeneProt_feature_type_constraint_gene 1
#define CDSGeneProt_feature_type_constraint_mRNA 2
#define CDSGeneProt_feature_type_constraint_cds 3
#define CDSGeneProt_feature_type_constraint_prot 4
#define CDSGeneProt_feature_type_constraint_exon 5
#define CDSGeneProt_feature_type_constraint_mat_peptide 6
/**************************************************
*
* CDSGeneProtPseudoConstraint
*
**************************************************/
typedef struct struct_CDSGeneProt_pseudo_constraint {
Uint2 feature;
Uint1 is_pseudo;
} CDSGeneProtPseudoConstraint, PNTR CDSGeneProtPseudoConstraintPtr;
NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintFree PROTO ((CDSGeneProtPseudoConstraintPtr ));
NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintNew PROTO (( void ));
NLM_EXTERN CDSGeneProtPseudoConstraintPtr LIBCALL CDSGeneProtPseudoConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CDSGeneProtPseudoConstraintAsnWrite PROTO (( CDSGeneProtPseudoConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr CDSGeneProtConstraintFieldPtr;
typedef ValNode CDSGeneProtConstraintField;
#define CDSGeneProtConstraintField_field 1
NLM_EXTERN CDSGeneProtConstraintFieldPtr LIBCALL CDSGeneProtConstraintFieldFree PROTO ((CDSGeneProtConstraintFieldPtr ));
NLM_EXTERN CDSGeneProtConstraintFieldPtr LIBCALL CDSGeneProtConstraintFieldAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CDSGeneProtConstraintFieldAsnWrite PROTO (( CDSGeneProtConstraintFieldPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* CDSGeneProtQualConstraint
*
**************************************************/
typedef struct struct_CDSGeneProt_qual_constraint {
ValNodePtr field1;
ValNodePtr field2;
struct struct_String_constraint PNTR constraint;
} CDSGeneProtQualConstraint, PNTR CDSGeneProtQualConstraintPtr;
NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintFree PROTO ((CDSGeneProtQualConstraintPtr ));
NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintNew PROTO (( void ));
NLM_EXTERN CDSGeneProtQualConstraintPtr LIBCALL CDSGeneProtQualConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CDSGeneProtQualConstraintAsnWrite PROTO (( CDSGeneProtQualConstraintPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FieldConstraint
*
**************************************************/
typedef struct struct_Field_constraint {
ValNodePtr field;
struct struct_String_constraint PNTR string_constraint;
} FieldConstraint, PNTR FieldConstraintPtr;
NLM_EXTERN FieldConstraintPtr LIBCALL FieldConstraintFree PROTO ((FieldConstraintPtr ));
NLM_EXTERN FieldConstraintPtr LIBCALL FieldConstraintNew PROTO (( void ));
NLM_EXTERN FieldConstraintPtr LIBCALL FieldConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FieldConstraintAsnWrite PROTO (( FieldConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FieldTypePtr;
typedef ValNode FieldType;
#define FieldType_source_qual 1
#define FieldType_feature_field 2
#define FieldType_rna_field 3
#define FieldType_cds_gene_prot 4
#define FieldType_molinfo_field 5
#define FieldType_pub 6
#define FieldType_struc_comment_field 7
#define FieldType_misc 8
#define FieldType_dblink 9
NLM_EXTERN FieldTypePtr LIBCALL FieldTypeFree PROTO ((FieldTypePtr ));
NLM_EXTERN FieldTypePtr LIBCALL FieldTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FieldTypeAsnWrite PROTO (( FieldTypePtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Sequence_constraint_rnamol_any 0
#define Sequence_constraint_rnamol_genomic 1
#define Sequence_constraint_rnamol_precursor_RNA 2
#define Sequence_constraint_rnamol_mRNA 3
#define Sequence_constraint_rnamol_rRNA 4
#define Sequence_constraint_rnamol_tRNA 5
#define Sequence_constraint_rnamol_genomic_mRNA 6
#define Sequence_constraint_rnamol_cRNA 7
#define Sequence_constraint_rnamol_transcribed_RNA 8
#define Sequence_constraint_rnamol_ncRNA 9
#define Sequence_constraint_rnamol_transfer_messenger_RNA 10
typedef ValNodePtr SequenceConstraintMolTypeConstraintPtr;
typedef ValNode SequenceConstraintMolTypeConstraint;
#define SequenceConstraintMolTypeConstraint_any 1
#define SequenceConstraintMolTypeConstraint_nucleotide 2
#define SequenceConstraintMolTypeConstraint_dna 3
#define SequenceConstraintMolTypeConstraint_rna 4
#define SequenceConstraintMolTypeConstraint_protein 5
NLM_EXTERN SequenceConstraintMolTypeConstraintPtr LIBCALL SequenceConstraintMolTypeConstraintFree PROTO ((SequenceConstraintMolTypeConstraintPtr ));
NLM_EXTERN SequenceConstraintMolTypeConstraintPtr LIBCALL SequenceConstraintMolTypeConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SequenceConstraintMolTypeConstraintAsnWrite PROTO (( SequenceConstraintMolTypeConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr QuantityConstraintPtr;
typedef ValNode QuantityConstraint;
#define QuantityConstraint_equals 1
#define QuantityConstraint_greater_than 2
#define QuantityConstraint_less_than 3
NLM_EXTERN QuantityConstraintPtr LIBCALL QuantityConstraintFree PROTO ((QuantityConstraintPtr ));
NLM_EXTERN QuantityConstraintPtr LIBCALL QuantityConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL QuantityConstraintAsnWrite PROTO (( QuantityConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Feature_strandedness_constraint_any 0
#define Feature_strandedness_constraint_minus_only 1
#define Feature_strandedness_constraint_plus_only 2
#define Feature_strandedness_constraint_at_least_one_minus 3
#define Feature_strandedness_constraint_at_least_one_plus 4
#define Feature_strandedness_constraint_no_minus 5
#define Feature_strandedness_constraint_no_plus 6
/**************************************************
*
* SequenceConstraint
*
**************************************************/
typedef struct struct_Sequence_constraint {
ValNodePtr seqtype;
struct struct_String_constraint PNTR id;
Uint2 feature;
ValNodePtr num_features;
ValNodePtr length;
Uint2 strandedness;
} SequenceConstraint, PNTR SequenceConstraintPtr;
NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintFree PROTO ((SequenceConstraintPtr ));
NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintNew PROTO (( void ));
NLM_EXTERN SequenceConstraintPtr LIBCALL SequenceConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SequenceConstraintAsnWrite PROTO (( SequenceConstraintPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Match_type_constraint_dont_care 0
#define Match_type_constraint_yes 1
#define Match_type_constraint_no 2
/**************************************************
*
* TranslationConstraint
*
**************************************************/
typedef struct struct_Translation_constraint {
struct struct_String_constraint PNTR actual_strings;
struct struct_String_constraint PNTR transl_strings;
Uint2 internal_stops;
ValNodePtr num_mismatches;
} TranslationConstraint, PNTR TranslationConstraintPtr;
NLM_EXTERN TranslationConstraintPtr LIBCALL TranslationConstraintFree PROTO ((TranslationConstraintPtr ));
NLM_EXTERN TranslationConstraintPtr LIBCALL TranslationConstraintNew PROTO (( void ));
NLM_EXTERN TranslationConstraintPtr LIBCALL TranslationConstraintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TranslationConstraintAsnWrite PROTO (( TranslationConstraintPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ConstraintChoicePtr;
typedef ValNode ConstraintChoice;
#define ConstraintChoice_string 1
#define ConstraintChoice_location 2
#define ConstraintChoice_field 3
#define ConstraintChoice_source 4
#define ConstraintChoice_cdsgeneprot_qual 5
#define ConstraintChoice_cdsgeneprot_pseudo 6
#define ConstraintChoice_sequence 7
#define ConstraintChoice_pub 8
#define ConstraintChoice_molinfo 9
#define ConstraintChoice_field_missing 10
#define ConstraintChoice_translation 11
NLM_EXTERN ConstraintChoicePtr LIBCALL ConstraintChoiceFree PROTO ((ConstraintChoicePtr ));
NLM_EXTERN ConstraintChoicePtr LIBCALL ConstraintChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConstraintChoiceAsnWrite PROTO (( ConstraintChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ConstraintChoiceSet
*
**************************************************/
typedef ValNode ConstraintChoiceSet;
typedef ValNodePtr ConstraintChoiceSetPtr;
#define ConstraintChoiceSetNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetFree PROTO ((ConstraintChoiceSetPtr ));
NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetNew PROTO (( void ));
NLM_EXTERN ConstraintChoiceSetPtr LIBCALL ConstraintChoiceSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConstraintChoiceSetAsnWrite PROTO (( ConstraintChoiceSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
typedef ValNodePtr TextMarkerPtr;
typedef ValNode TextMarker;
#define TextMarker_free_text 1
#define TextMarker_digits 2
#define TextMarker_letters 3
NLM_EXTERN TextMarkerPtr LIBCALL TextMarkerFree PROTO ((TextMarkerPtr ));
NLM_EXTERN TextMarkerPtr LIBCALL TextMarkerAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TextMarkerAsnWrite PROTO (( TextMarkerPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* TextPortion
*
**************************************************/
typedef struct struct_Text_portion {
ValNodePtr left_marker;
Uint1 include_left;
ValNodePtr right_marker;
Uint1 include_right;
Uint1 inside;
Uint1 case_sensitive;
Uint1 whole_word;
} TextPortion, PNTR TextPortionPtr;
NLM_EXTERN TextPortionPtr LIBCALL TextPortionFree PROTO ((TextPortionPtr ));
NLM_EXTERN TextPortionPtr LIBCALL TextPortionNew PROTO (( void ));
NLM_EXTERN TextPortionPtr LIBCALL TextPortionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TextPortionAsnWrite PROTO (( TextPortionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Field_edit_location_anywhere 0
#define Field_edit_location_beginning 1
#define Field_edit_location_end 2
/**************************************************
*
* FieldEdit
*
**************************************************/
typedef struct struct_Field_edit {
CharPtr find_txt;
CharPtr repl_txt;
Uint2 location;
Uint1 case_insensitive;
} FieldEdit, PNTR FieldEditPtr;
NLM_EXTERN FieldEditPtr LIBCALL FieldEditFree PROTO ((FieldEditPtr ));
NLM_EXTERN FieldEditPtr LIBCALL FieldEditNew PROTO (( void ));
NLM_EXTERN FieldEditPtr LIBCALL FieldEditAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FieldEditAsnWrite PROTO (( FieldEditPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FieldPairTypePtr;
typedef ValNode FieldPairType;
#define FieldPairType_source_qual 1
#define FieldPairType_feature_field 2
#define FieldPairType_rna_field 3
#define FieldPairType_cds_gene_prot 4
#define FieldPairType_molinfo_field 5
#define FieldPairType_struc_comment_field 6
#define FieldPairType_dblink 7
NLM_EXTERN FieldPairTypePtr LIBCALL FieldPairTypeFree PROTO ((FieldPairTypePtr ));
NLM_EXTERN FieldPairTypePtr LIBCALL FieldPairTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FieldPairTypeAsnWrite PROTO (( FieldPairTypePtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define ExistingTextOption_replace_old 1
#define ExistingTextOption_append_semi 2
#define ExistingTextOption_append_space 3
#define ExistingTextOption_append_colon 4
#define ExistingTextOption_append_comma 5
#define ExistingTextOption_append_none 6
#define ExistingTextOption_prefix_semi 7
#define ExistingTextOption_prefix_space 8
#define ExistingTextOption_prefix_colon 9
#define ExistingTextOption_prefix_comma 10
#define ExistingTextOption_prefix_none 11
#define ExistingTextOption_leave_old 12
#define ExistingTextOption_add_qual 13
/**************************************************
*
* ApplyAction
*
**************************************************/
typedef struct struct_Apply_action {
ValNodePtr field;
CharPtr value;
Uint2 existing_text;
} ApplyAction, PNTR ApplyActionPtr;
NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionFree PROTO ((ApplyActionPtr ));
NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionNew PROTO (( void ));
NLM_EXTERN ApplyActionPtr LIBCALL ApplyActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ApplyActionAsnWrite PROTO (( ApplyActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* EditAction
*
**************************************************/
typedef struct struct_Edit_action {
struct struct_Field_edit PNTR edit;
ValNodePtr field;
} EditAction, PNTR EditActionPtr;
NLM_EXTERN EditActionPtr LIBCALL EditActionFree PROTO ((EditActionPtr ));
NLM_EXTERN EditActionPtr LIBCALL EditActionNew PROTO (( void ));
NLM_EXTERN EditActionPtr LIBCALL EditActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL EditActionAsnWrite PROTO (( EditActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Cap_change_none 0
#define Cap_change_tolower 1
#define Cap_change_toupper 2
#define Cap_change_firstcap 3
#define Cap_change_firstcaprestnochange 4
typedef ValNodePtr TextTransformPtr;
typedef ValNode TextTransform;
#define TextTransform_edit 1
#define TextTransform_caps 2
#define TextTransform_remove 3
NLM_EXTERN TextTransformPtr LIBCALL TextTransformFree PROTO ((TextTransformPtr ));
NLM_EXTERN TextTransformPtr LIBCALL TextTransformAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TextTransformAsnWrite PROTO (( TextTransformPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* TextTransformSet
*
**************************************************/
typedef ValNode TextTransformSet;
typedef ValNodePtr TextTransformSetPtr;
#define TextTransformSetNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN TextTransformSetPtr LIBCALL TextTransformSetFree PROTO ((TextTransformSetPtr ));
NLM_EXTERN TextTransformSetPtr LIBCALL TextTransformSetNew PROTO (( void ));
NLM_EXTERN TextTransformSetPtr LIBCALL TextTransformSetAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL TextTransformSetAsnWrite PROTO (( TextTransformSetPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
/**************************************************
*
* ConvertAction
*
**************************************************/
typedef struct struct_Convert_action {
ValNodePtr fields;
Uint1 strip_name;
Uint1 keep_original;
Uint2 capitalization;
Uint2 existing_text;
} ConvertAction, PNTR ConvertActionPtr;
NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionFree PROTO ((ConvertActionPtr ));
NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionNew PROTO (( void ));
NLM_EXTERN ConvertActionPtr LIBCALL ConvertActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertActionAsnWrite PROTO (( ConvertActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* CopyAction
*
**************************************************/
typedef struct struct_Copy_action {
ValNodePtr fields;
Uint2 existing_text;
} CopyAction, PNTR CopyActionPtr;
NLM_EXTERN CopyActionPtr LIBCALL CopyActionFree PROTO ((CopyActionPtr ));
NLM_EXTERN CopyActionPtr LIBCALL CopyActionNew PROTO (( void ));
NLM_EXTERN CopyActionPtr LIBCALL CopyActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL CopyActionAsnWrite PROTO (( CopyActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SwapAction
*
**************************************************/
typedef struct struct_Swap_action {
ValNodePtr fields;
ValNodePtr field_to;
} SwapAction, PNTR SwapActionPtr;
NLM_EXTERN SwapActionPtr LIBCALL SwapActionFree PROTO ((SwapActionPtr ));
NLM_EXTERN SwapActionPtr LIBCALL SwapActionNew PROTO (( void ));
NLM_EXTERN SwapActionPtr LIBCALL SwapActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SwapActionAsnWrite PROTO (( SwapActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* AECRParseAction
*
**************************************************/
typedef struct struct_AECRParse_action {
struct struct_Text_portion PNTR portion;
ValNodePtr fields;
Uint1 remove_from_parsed;
Uint1 remove_left;
Uint1 remove_right;
ValNodePtr transform;
Uint2 existing_text;
} AECRParseAction, PNTR AECRParseActionPtr;
NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionFree PROTO ((AECRParseActionPtr ));
NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionNew PROTO (( void ));
NLM_EXTERN AECRParseActionPtr LIBCALL AECRParseActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AECRParseActionAsnWrite PROTO (( AECRParseActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveAction
*
**************************************************/
typedef struct struct_Remove_action {
ValNodePtr field;
} RemoveAction, PNTR RemoveActionPtr;
NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionFree PROTO ((RemoveActionPtr ));
NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionNew PROTO (( void ));
NLM_EXTERN RemoveActionPtr LIBCALL RemoveActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveActionAsnWrite PROTO (( RemoveActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ActionChoicePtr;
typedef ValNode ActionChoice;
#define ActionChoice_apply 1
#define ActionChoice_edit 2
#define ActionChoice_convert 3
#define ActionChoice_copy 4
#define ActionChoice_swap 5
#define ActionChoice_remove 6
#define ActionChoice_parse 7
NLM_EXTERN ActionChoicePtr LIBCALL ActionChoiceFree PROTO ((ActionChoicePtr ));
NLM_EXTERN ActionChoicePtr LIBCALL ActionChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ActionChoiceAsnWrite PROTO (( ActionChoicePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ParseSrcOrgChoicePtr;
typedef ValNode ParseSrcOrgChoice;
#define ParseSrcOrgChoice_source_qual 1
#define ParseSrcOrgChoice_taxname_after_binomial 2
NLM_EXTERN ParseSrcOrgChoicePtr LIBCALL ParseSrcOrgChoiceFree PROTO ((ParseSrcOrgChoicePtr ));
NLM_EXTERN ParseSrcOrgChoicePtr LIBCALL ParseSrcOrgChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseSrcOrgChoiceAsnWrite PROTO (( ParseSrcOrgChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ParseSrcOrg
*
**************************************************/
typedef struct struct_Parse_src_org {
ValNodePtr field;
Uint2 type;
} ParseSrcOrg, PNTR ParseSrcOrgPtr;
NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgFree PROTO ((ParseSrcOrgPtr ));
NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgNew PROTO (( void ));
NLM_EXTERN ParseSrcOrgPtr LIBCALL ParseSrcOrgAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseSrcOrgAsnWrite PROTO (( ParseSrcOrgPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ParseSrcGeneralIdPtr;
typedef ValNode ParseSrcGeneralId;
#define ParseSrcGeneralId_whole_text 1
#define ParseSrcGeneralId_db 2
#define ParseSrcGeneralId_tag 3
NLM_EXTERN ParseSrcGeneralIdPtr LIBCALL ParseSrcGeneralIdFree PROTO ((ParseSrcGeneralIdPtr ));
NLM_EXTERN ParseSrcGeneralIdPtr LIBCALL ParseSrcGeneralIdAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseSrcGeneralIdAsnWrite PROTO (( ParseSrcGeneralIdPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ParseSrcPtr;
typedef ValNode ParseSrc;
#define ParseSrc_defline 1
#define ParseSrc_flatfile 2
#define ParseSrc_local_id 3
#define ParseSrc_org 4
#define ParseSrc_comment 5
#define ParseSrc_bankit_comment 6
#define ParseSrc_structured_comment 7
#define ParseSrc_file_id 8
#define ParseSrc_general_id 9
NLM_EXTERN ParseSrcPtr LIBCALL ParseSrcFree PROTO ((ParseSrcPtr ));
NLM_EXTERN ParseSrcPtr LIBCALL ParseSrcAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseSrcAsnWrite PROTO (( ParseSrcPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ParseDstOrg
*
**************************************************/
typedef struct struct_Parse_dst_org {
ValNodePtr field;
Uint2 type;
} ParseDstOrg, PNTR ParseDstOrgPtr;
NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgFree PROTO ((ParseDstOrgPtr ));
NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgNew PROTO (( void ));
NLM_EXTERN ParseDstOrgPtr LIBCALL ParseDstOrgAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseDstOrgAsnWrite PROTO (( ParseDstOrgPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ParseDestPtr;
typedef ValNode ParseDest;
#define ParseDest_defline 1
#define ParseDest_org 2
#define ParseDest_featqual 3
#define ParseDest_comment_descriptor 4
#define ParseDest_dbxref 5
NLM_EXTERN ParseDestPtr LIBCALL ParseDestFree PROTO ((ParseDestPtr ));
NLM_EXTERN ParseDestPtr LIBCALL ParseDestAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ParseDestAsnWrite PROTO (( ParseDestPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* LocationInterval
*
**************************************************/
typedef struct struct_Location_interval {
Int4 from;
Int4 to;
} LocationInterval, PNTR LocationIntervalPtr;
NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalFree PROTO ((LocationIntervalPtr ));
NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalNew PROTO (( void ));
NLM_EXTERN LocationIntervalPtr LIBCALL LocationIntervalAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationIntervalAsnWrite PROTO (( LocationIntervalPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr LocationChoicePtr;
typedef ValNode LocationChoice;
#define LocationChoice_interval 1
#define LocationChoice_whole_sequence 2
#define LocationChoice_point 3
NLM_EXTERN LocationChoicePtr LIBCALL LocationChoiceFree PROTO ((LocationChoicePtr ));
NLM_EXTERN LocationChoicePtr LIBCALL LocationChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationChoiceAsnWrite PROTO (( LocationChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SequenceList
*
**************************************************/
typedef ValNode SequenceList;
typedef ValNodePtr SequenceListPtr;
#define SequenceListNew() ValNodeNew(NULL)
#ifdef NLM_GENERATED_CODE_PROTO
NLM_EXTERN SequenceListPtr LIBCALL SequenceListFree PROTO ((SequenceListPtr ));
NLM_EXTERN SequenceListPtr LIBCALL SequenceListNew PROTO (( void ));
NLM_EXTERN SequenceListPtr LIBCALL SequenceListAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SequenceListAsnWrite PROTO (( SequenceListPtr , AsnIoPtr, AsnTypePtr));
#endif /* NLM_GENERATED_CODE_PROTO */
typedef ValNodePtr SequenceListChoicePtr;
typedef ValNode SequenceListChoice;
#define SequenceListChoice_list 1
#define SequenceListChoice_all 2
NLM_EXTERN SequenceListChoicePtr LIBCALL SequenceListChoiceFree PROTO ((SequenceListChoicePtr ));
NLM_EXTERN SequenceListChoicePtr LIBCALL SequenceListChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SequenceListChoiceAsnWrite PROTO (( SequenceListChoicePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ApplyFeatureAction
*
**************************************************/
typedef struct struct_Apply_feature_action {
Uint2 type;
Uint1 partial5;
Uint1 partial3;
Uint1 plus_strand;
ValNodePtr location;
ValNodePtr seq_list;
Uint1 add_redundant;
Uint1 add_mrna;
Uint1 apply_to_parts;
Int4 only_seg_num;
ValNodePtr fields;
ValNodePtr src_fields;
} ApplyFeatureAction, PNTR ApplyFeatureActionPtr;
NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionFree PROTO ((ApplyFeatureActionPtr ));
NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionNew PROTO (( void ));
NLM_EXTERN ApplyFeatureActionPtr LIBCALL ApplyFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ApplyFeatureActionAsnWrite PROTO (( ApplyFeatureActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveFeatureAction
*
**************************************************/
typedef struct struct_Remove_feature_action {
Uint2 type;
ValNodePtr constraint;
} RemoveFeatureAction, PNTR RemoveFeatureActionPtr;
NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionFree PROTO ((RemoveFeatureActionPtr ));
NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionNew PROTO (( void ));
NLM_EXTERN RemoveFeatureActionPtr LIBCALL RemoveFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveFeatureActionAsnWrite PROTO (( RemoveFeatureActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ConvertFromCDSOptions
*
**************************************************/
typedef struct struct_Convert_from_CDS_options {
Uint1 remove_mRNA;
Uint1 remove_gene;
Uint1 remove_transcript_id;
} ConvertFromCDSOptions, PNTR ConvertFromCDSOptionsPtr;
NLM_EXTERN ConvertFromCDSOptionsPtr LIBCALL ConvertFromCDSOptionsFree PROTO ((ConvertFromCDSOptionsPtr ));
NLM_EXTERN ConvertFromCDSOptionsPtr LIBCALL ConvertFromCDSOptionsNew PROTO (( void ));
NLM_EXTERN ConvertFromCDSOptionsPtr LIBCALL ConvertFromCDSOptionsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertFromCDSOptionsAsnWrite PROTO (( ConvertFromCDSOptionsPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ConvertFeatureSrcOptionsPtr;
typedef ValNode ConvertFeatureSrcOptions;
#define ConvertFeatureSrcOptions_cds 1
NLM_EXTERN ConvertFeatureSrcOptionsPtr LIBCALL ConvertFeatureSrcOptionsFree PROTO ((ConvertFeatureSrcOptionsPtr ));
NLM_EXTERN ConvertFeatureSrcOptionsPtr LIBCALL ConvertFeatureSrcOptionsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertFeatureSrcOptionsAsnWrite PROTO (( ConvertFeatureSrcOptionsPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Bond_type_disulfide 1
#define Bond_type_thioester 2
#define Bond_type_crosslink 3
#define Bond_type_thioether 4
#define Bond_type_other 5
/* following #defines are for enumerated type, not used by object loaders */
#define Site_type_active 1
#define Site_type_binding 2
#define Site_type_cleavage 3
#define Site_type_inhibit 4
#define Site_type_modified 5
#define Site_type_glycosylation 6
#define Site_type_myristoylation 7
#define Site_type_mutagenized 8
#define Site_type_metal_binding 9
#define Site_type_phosphorylation 10
#define Site_type_acetylation 11
#define Site_type_amidation 12
#define Site_type_methylation 13
#define Site_type_hydroxylation 14
#define Site_type_sulfatation 15
#define Site_type_oxidative_deamination 16
#define Site_type_pyrrolidone_carboxylic_acid 17
#define Site_type_gamma_carboxyglutamic_acid 18
#define Site_type_blocked 19
#define Site_type_lipid_binding 20
#define Site_type_np_binding 21
#define Site_type_dna_binding 22
#define Site_type_signal_peptide 23
#define Site_type_transit_peptide 24
#define Site_type_transmembrane_region 25
#define Site_type_nitrosylation 26
#define Site_type_other 27
/**************************************************
*
* RegionType
*
**************************************************/
typedef struct struct_Region_type {
Uint1 create_nucleotide;
} RegionType, PNTR RegionTypePtr;
NLM_EXTERN RegionTypePtr LIBCALL RegionTypeFree PROTO ((RegionTypePtr ));
NLM_EXTERN RegionTypePtr LIBCALL RegionTypeNew PROTO (( void ));
NLM_EXTERN RegionTypePtr LIBCALL RegionTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RegionTypeAsnWrite PROTO (( RegionTypePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ConvertFeatureDstOptionsPtr;
typedef ValNode ConvertFeatureDstOptions;
#define ConvertFeatureDstOptions_bond 1
#define ConvertFeatureDstOptions_site 2
#define ConvertFeatureDstOptions_region 3
#define ConvertFeatureDstOptions_ncrna_class 4
#define ConvertFeatureDstOptions_remove_original 5
NLM_EXTERN ConvertFeatureDstOptionsPtr LIBCALL ConvertFeatureDstOptionsFree PROTO ((ConvertFeatureDstOptionsPtr ));
NLM_EXTERN ConvertFeatureDstOptionsPtr LIBCALL ConvertFeatureDstOptionsAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertFeatureDstOptionsAsnWrite PROTO (( ConvertFeatureDstOptionsPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ConvertFeatureAction
*
**************************************************/
typedef struct struct_Convert_feature_action {
Uint2 type_from;
Uint2 type_to;
ValNodePtr src_options;
ValNodePtr dst_options;
Uint1 leave_original;
ValNodePtr src_feat_constraint;
} ConvertFeatureAction, PNTR ConvertFeatureActionPtr;
NLM_EXTERN ConvertFeatureActionPtr LIBCALL ConvertFeatureActionFree PROTO ((ConvertFeatureActionPtr ));
NLM_EXTERN ConvertFeatureActionPtr LIBCALL ConvertFeatureActionNew PROTO (( void ));
NLM_EXTERN ConvertFeatureActionPtr LIBCALL ConvertFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ConvertFeatureActionAsnWrite PROTO (( ConvertFeatureActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Feature_location_strand_from_any 0
#define Feature_location_strand_from_plus 1
#define Feature_location_strand_from_minus 2
#define Feature_location_strand_from_unknown 3
#define Feature_location_strand_from_both 4
/* following #defines are for enumerated type, not used by object loaders */
#define Feature_location_strand_to_plus 1
#define Feature_location_strand_to_minus 2
#define Feature_location_strand_to_unknown 3
#define Feature_location_strand_to_both 4
#define Feature_location_strand_to_reverse 5
/**************************************************
*
* EditLocationStrand
*
**************************************************/
typedef struct struct_Edit_location_strand {
Uint2 strand_from;
Uint2 strand_to;
} EditLocationStrand, PNTR EditLocationStrandPtr;
NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandFree PROTO ((EditLocationStrandPtr ));
NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandNew PROTO (( void ));
NLM_EXTERN EditLocationStrandPtr LIBCALL EditLocationStrandAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL EditLocationStrandAsnWrite PROTO (( EditLocationStrandPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_5_set_constraint_all 0
#define Partial_5_set_constraint_at_end 1
#define Partial_5_set_constraint_bad_start 2
#define Partial_5_set_constraint_frame_not_one 3
/**************************************************
*
* Partial5SetAction
*
**************************************************/
typedef struct struct_Partial_5_set_action {
Uint2 constraint;
Uint1 extend;
} Partial5SetAction, PNTR Partial5SetActionPtr;
NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionFree PROTO ((Partial5SetActionPtr ));
NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionNew PROTO (( void ));
NLM_EXTERN Partial5SetActionPtr LIBCALL Partial5SetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL Partial5SetActionAsnWrite PROTO (( Partial5SetActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_5_clear_constraint_all 0
#define Partial_5_clear_constraint_not_at_end 1
#define Partial_5_clear_constraint_good_start 2
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_3_set_constraint_all 0
#define Partial_3_set_constraint_at_end 1
#define Partial_3_set_constraint_bad_end 2
/**************************************************
*
* Partial3SetAction
*
**************************************************/
typedef struct struct_Partial_3_set_action {
Uint2 constraint;
Uint1 extend;
} Partial3SetAction, PNTR Partial3SetActionPtr;
NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionFree PROTO ((Partial3SetActionPtr ));
NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionNew PROTO (( void ));
NLM_EXTERN Partial3SetActionPtr LIBCALL Partial3SetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL Partial3SetActionAsnWrite PROTO (( Partial3SetActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_3_clear_constraint_all 0
#define Partial_3_clear_constraint_not_at_end 1
#define Partial_3_clear_constraint_good_end 2
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_both_set_constraint_all 0
#define Partial_both_set_constraint_at_end 1
/**************************************************
*
* PartialBothSetAction
*
**************************************************/
typedef struct struct_Partial_both_set_action {
Uint2 constraint;
Uint1 extend;
} PartialBothSetAction, PNTR PartialBothSetActionPtr;
NLM_EXTERN PartialBothSetActionPtr LIBCALL PartialBothSetActionFree PROTO ((PartialBothSetActionPtr ));
NLM_EXTERN PartialBothSetActionPtr LIBCALL PartialBothSetActionNew PROTO (( void ));
NLM_EXTERN PartialBothSetActionPtr LIBCALL PartialBothSetActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL PartialBothSetActionAsnWrite PROTO (( PartialBothSetActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Partial_both_clear_constraint_all 0
#define Partial_both_clear_constraint_not_at_end 1
/* following #defines are for enumerated type, not used by object loaders */
#define Convert_location_type_join 1
#define Convert_location_type_order 2
#define Convert_location_type_merge 3
typedef ValNodePtr LocationEditTypePtr;
typedef ValNode LocationEditType;
#define LocationEditType_strand 1
#define LocationEditType_set_5_partial 2
#define LocationEditType_clear_5_partial 3
#define LocationEditType_set_3_partial 4
#define LocationEditType_clear_3_partial 5
#define LocationEditType_set_both_partial 6
#define LocationEditType_clear_both_partial 7
#define LocationEditType_convert 8
#define LocationEditType_extend_5 9
#define LocationEditType_extend_3 10
NLM_EXTERN LocationEditTypePtr LIBCALL LocationEditTypeFree PROTO ((LocationEditTypePtr ));
NLM_EXTERN LocationEditTypePtr LIBCALL LocationEditTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL LocationEditTypeAsnWrite PROTO (( LocationEditTypePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* EditFeatureLocationAction
*
**************************************************/
typedef struct struct_Edit_feature_location_action {
Uint2 type;
ValNodePtr action;
Uint1 retranslate_cds;
ValNodePtr constraint;
} EditFeatureLocationAction, PNTR EditFeatureLocationActionPtr;
NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionFree PROTO ((EditFeatureLocationActionPtr ));
NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionNew PROTO (( void ));
NLM_EXTERN EditFeatureLocationActionPtr LIBCALL EditFeatureLocationActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL EditFeatureLocationActionAsnWrite PROTO (( EditFeatureLocationActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MolinfoBlock
*
**************************************************/
typedef struct struct_Molinfo_block {
ValNodePtr to_list;
ValNodePtr from_list;
ValNodePtr constraint;
} MolinfoBlock, PNTR MolinfoBlockPtr;
NLM_EXTERN MolinfoBlockPtr LIBCALL MolinfoBlockFree PROTO ((MolinfoBlockPtr ));
NLM_EXTERN MolinfoBlockPtr LIBCALL MolinfoBlockNew PROTO (( void ));
NLM_EXTERN MolinfoBlockPtr LIBCALL MolinfoBlockAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MolinfoBlockAsnWrite PROTO (( MolinfoBlockPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Descriptor_type_all 0
#define Descriptor_type_title 1
#define Descriptor_type_source 2
#define Descriptor_type_publication 3
#define Descriptor_type_comment 4
#define Descriptor_type_genbank 5
#define Descriptor_type_user 6
#define Descriptor_type_create_date 7
#define Descriptor_type_update_date 8
#define Descriptor_type_mol_info 9
#define Descriptor_type_structured_comment 10
#define Descriptor_type_genome_project_id 11
/**************************************************
*
* RemoveDescriptorAction
*
**************************************************/
typedef struct struct_Remove_descriptor_action {
Uint2 type;
ValNodePtr constraint;
} RemoveDescriptorAction, PNTR RemoveDescriptorActionPtr;
NLM_EXTERN RemoveDescriptorActionPtr LIBCALL RemoveDescriptorActionFree PROTO ((RemoveDescriptorActionPtr ));
NLM_EXTERN RemoveDescriptorActionPtr LIBCALL RemoveDescriptorActionNew PROTO (( void ));
NLM_EXTERN RemoveDescriptorActionPtr LIBCALL RemoveDescriptorActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveDescriptorActionAsnWrite PROTO (( RemoveDescriptorActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Autodef_list_type_feature_list 1
#define Autodef_list_type_complete_sequence 2
#define Autodef_list_type_complete_genome 3
/**************************************************
*
* AutodefAction
*
**************************************************/
typedef struct struct_Autodef_action {
ValNodePtr modifiers;
Uint2 clause_list_type;
} AutodefAction, PNTR AutodefActionPtr;
NLM_EXTERN AutodefActionPtr LIBCALL AutodefActionFree PROTO ((AutodefActionPtr ));
NLM_EXTERN AutodefActionPtr LIBCALL AutodefActionNew PROTO (( void ));
NLM_EXTERN AutodefActionPtr LIBCALL AutodefActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AutodefActionAsnWrite PROTO (( AutodefActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* FixPubCapsAction
*
**************************************************/
typedef struct struct_Fix_pub_caps_action {
Uint1 title;
Uint1 authors;
Uint1 affiliation;
Uint1 affil_country;
Uint1 punct_only;
ValNodePtr constraint;
} FixPubCapsAction, PNTR FixPubCapsActionPtr;
NLM_EXTERN FixPubCapsActionPtr LIBCALL FixPubCapsActionFree PROTO ((FixPubCapsActionPtr ));
NLM_EXTERN FixPubCapsActionPtr LIBCALL FixPubCapsActionNew PROTO (( void ));
NLM_EXTERN FixPubCapsActionPtr LIBCALL FixPubCapsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FixPubCapsActionAsnWrite PROTO (( FixPubCapsActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Sort_order_short_to_long 1
#define Sort_order_long_to_short 2
#define Sort_order_alphabetical 3
/**************************************************
*
* SortFieldsAction
*
**************************************************/
typedef struct struct_Sort_fields_action {
ValNodePtr field;
Uint2 order;
ValNodePtr constraint;
} SortFieldsAction, PNTR SortFieldsActionPtr;
NLM_EXTERN SortFieldsActionPtr LIBCALL SortFieldsActionFree PROTO ((SortFieldsActionPtr ));
NLM_EXTERN SortFieldsActionPtr LIBCALL SortFieldsActionNew PROTO (( void ));
NLM_EXTERN SortFieldsActionPtr LIBCALL SortFieldsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SortFieldsActionAsnWrite PROTO (( SortFieldsActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FixCapsActionPtr;
typedef ValNode FixCapsAction;
#define FixCapsAction_pub 1
#define FixCapsAction_src_country 2
#define FixCapsAction_mouse_strain 3
#define FixCapsAction_src_qual 4
NLM_EXTERN FixCapsActionPtr LIBCALL FixCapsActionFree PROTO ((FixCapsActionPtr ));
NLM_EXTERN FixCapsActionPtr LIBCALL FixCapsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FixCapsActionAsnWrite PROTO (( FixCapsActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr FixFormatActionPtr;
typedef ValNode FixFormatAction;
#define FixFormatAction_collection_date 1
#define FixFormatAction_lat_lon 2
#define FixFormatAction_primers 3
#define FixFormatAction_protein_name 4
NLM_EXTERN FixFormatActionPtr LIBCALL FixFormatActionFree PROTO ((FixFormatActionPtr ));
NLM_EXTERN FixFormatActionPtr LIBCALL FixFormatActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL FixFormatActionAsnWrite PROTO (( FixFormatActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveDuplicateFeatureAction
*
**************************************************/
typedef struct struct_Remove_duplicate_feature_action {
Uint2 type;
Uint1 ignore_partials;
Uint1 case_sensitive;
Uint1 remove_proteins;
ValNodePtr rd_constraint;
} RemoveDuplicateFeatureAction, PNTR RemoveDuplicateFeatureActionPtr;
NLM_EXTERN RemoveDuplicateFeatureActionPtr LIBCALL RemoveDuplicateFeatureActionFree PROTO ((RemoveDuplicateFeatureActionPtr ));
NLM_EXTERN RemoveDuplicateFeatureActionPtr LIBCALL RemoveDuplicateFeatureActionNew PROTO (( void ));
NLM_EXTERN RemoveDuplicateFeatureActionPtr LIBCALL RemoveDuplicateFeatureActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveDuplicateFeatureActionAsnWrite PROTO (( RemoveDuplicateFeatureActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Gene_xref_suppression_type_any 0
#define Gene_xref_suppression_type_suppressing 1
#define Gene_xref_suppression_type_non_suppressing 2
/* following #defines are for enumerated type, not used by object loaders */
#define Gene_xref_necessary_type_any 0
#define Gene_xref_necessary_type_necessary 1
#define Gene_xref_necessary_type_unnecessary 2
/**************************************************
*
* GeneXrefType
*
**************************************************/
typedef struct struct_Gene_xref_type {
Uint2 feature;
Uint2 suppression;
Uint2 necessary;
} GeneXrefType, PNTR GeneXrefTypePtr;
NLM_EXTERN GeneXrefTypePtr LIBCALL GeneXrefTypeFree PROTO ((GeneXrefTypePtr ));
NLM_EXTERN GeneXrefTypePtr LIBCALL GeneXrefTypeNew PROTO (( void ));
NLM_EXTERN GeneXrefTypePtr LIBCALL GeneXrefTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL GeneXrefTypeAsnWrite PROTO (( GeneXrefTypePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr XrefTypePtr;
typedef ValNode XrefType;
#define XrefType_gene 1
NLM_EXTERN XrefTypePtr LIBCALL XrefTypeFree PROTO ((XrefTypePtr ));
NLM_EXTERN XrefTypePtr LIBCALL XrefTypeAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL XrefTypeAsnWrite PROTO (( XrefTypePtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* RemoveXrefsAction
*
**************************************************/
typedef struct struct_Remove_xrefs_action {
ValNodePtr xref_type;
ValNodePtr constraint;
} RemoveXrefsAction, PNTR RemoveXrefsActionPtr;
NLM_EXTERN RemoveXrefsActionPtr LIBCALL RemoveXrefsActionFree PROTO ((RemoveXrefsActionPtr ));
NLM_EXTERN RemoveXrefsActionPtr LIBCALL RemoveXrefsActionNew PROTO (( void ));
NLM_EXTERN RemoveXrefsActionPtr LIBCALL RemoveXrefsActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL RemoveXrefsActionAsnWrite PROTO (( RemoveXrefsActionPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* MakeGeneXrefAction
*
**************************************************/
typedef struct struct_Make_gene_xref_action {
Uint2 feature;
ValNodePtr constraint;
} MakeGeneXrefAction, PNTR MakeGeneXrefActionPtr;
NLM_EXTERN MakeGeneXrefActionPtr LIBCALL MakeGeneXrefActionFree PROTO ((MakeGeneXrefActionPtr ));
NLM_EXTERN MakeGeneXrefActionPtr LIBCALL MakeGeneXrefActionNew PROTO (( void ));
NLM_EXTERN MakeGeneXrefActionPtr LIBCALL MakeGeneXrefActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MakeGeneXrefActionAsnWrite PROTO (( MakeGeneXrefActionPtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Author_fix_type_truncate_middle_initials 1
#define Author_fix_type_strip_suffix 2
#define Author_fix_type_move_middle_to_first 3
/**************************************************
*
* AuthorFixAction
*
**************************************************/
typedef struct struct_Author_fix_action {
Uint2 fix_type;
ValNodePtr constraint;
} AuthorFixAction, PNTR AuthorFixActionPtr;
NLM_EXTERN AuthorFixActionPtr LIBCALL AuthorFixActionFree PROTO ((AuthorFixActionPtr ));
NLM_EXTERN AuthorFixActionPtr LIBCALL AuthorFixActionNew PROTO (( void ));
NLM_EXTERN AuthorFixActionPtr LIBCALL AuthorFixActionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL AuthorFixActionAsnWrite PROTO (( AuthorFixActionPtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr MacroActionChoicePtr;
typedef ValNode MacroActionChoice;
#define MacroActionChoice_aecr 1
#define MacroActionChoice_parse 2
#define MacroActionChoice_add_feature 3
#define MacroActionChoice_remove_feature 4
#define MacroActionChoice_convert_feature 5
#define MacroActionChoice_edit_location 6
#define MacroActionChoice_remove_descriptor 7
#define MacroActionChoice_autodef 8
#define MacroActionChoice_removesets 9
#define MacroActionChoice_trim_junk_from_primer_seq 10
#define MacroActionChoice_trim_stop_from_complete_cds 11
#define MacroActionChoice_fix_usa_and_states 12
#define MacroActionChoice_synchronize_cds_partials 13
#define MacroActionChoice_adjust_for_consensus_splice 14
#define MacroActionChoice_fix_pub_caps 15
#define MacroActionChoice_remove_seg_gaps 16
#define MacroActionChoice_sort_fields 17
#define MacroActionChoice_apply_molinfo_block 18
#define MacroActionChoice_fix_caps 19
#define MacroActionChoice_fix_format 20
#define MacroActionChoice_fix_spell 21
#define MacroActionChoice_remove_duplicate_features 22
#define MacroActionChoice_remove_lineage_notes 23
#define MacroActionChoice_remove_xrefs 24
#define MacroActionChoice_make_gene_xrefs 25
#define MacroActionChoice_make_bold_xrefs 26
#define MacroActionChoice_fix_author 27
NLM_EXTERN MacroActionChoicePtr LIBCALL MacroActionChoiceFree PROTO ((MacroActionChoicePtr ));
NLM_EXTERN MacroActionChoicePtr LIBCALL MacroActionChoiceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL MacroActionChoiceAsnWrite PROTO (( MacroActionChoicePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr SearchFuncPtr;
typedef ValNode SearchFunc;
#define SearchFunc_string_constraint 1
#define SearchFunc_contains_plural 2
#define SearchFunc_n_or_more_brackets_or_parentheses 3
#define SearchFunc_three_numbers 4
#define SearchFunc_underscore 5
#define SearchFunc_prefix_and_numbers 6
#define SearchFunc_all_caps 7
#define SearchFunc_unbalanced_paren 8
#define SearchFunc_too_long 9
#define SearchFunc_has_term 10
NLM_EXTERN SearchFuncPtr LIBCALL SearchFuncFree PROTO ((SearchFuncPtr ));
NLM_EXTERN SearchFuncPtr LIBCALL SearchFuncAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SearchFuncAsnWrite PROTO (( SearchFuncPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* SimpleReplace
*
**************************************************/
typedef struct struct_Simple_replace {
CharPtr replace;
Uint1 whole_string;
Uint1 weasel_to_putative;
} SimpleReplace, PNTR SimpleReplacePtr;
NLM_EXTERN SimpleReplacePtr LIBCALL SimpleReplaceFree PROTO ((SimpleReplacePtr ));
NLM_EXTERN SimpleReplacePtr LIBCALL SimpleReplaceNew PROTO (( void ));
NLM_EXTERN SimpleReplacePtr LIBCALL SimpleReplaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SimpleReplaceAsnWrite PROTO (( SimpleReplacePtr , AsnIoPtr, AsnTypePtr));
typedef ValNodePtr ReplaceFuncPtr;
typedef ValNode ReplaceFunc;
#define ReplaceFunc_simple_replace 1
#define ReplaceFunc_haem_replace 2
NLM_EXTERN ReplaceFuncPtr LIBCALL ReplaceFuncFree PROTO ((ReplaceFuncPtr ));
NLM_EXTERN ReplaceFuncPtr LIBCALL ReplaceFuncAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ReplaceFuncAsnWrite PROTO (( ReplaceFuncPtr , AsnIoPtr, AsnTypePtr));
/**************************************************
*
* ReplaceRule
*
**************************************************/
typedef struct struct_Replace_rule {
ValNodePtr replace_func;
Uint1 move_to_note;
} ReplaceRule, PNTR ReplaceRulePtr;
NLM_EXTERN ReplaceRulePtr LIBCALL ReplaceRuleFree PROTO ((ReplaceRulePtr ));
NLM_EXTERN ReplaceRulePtr LIBCALL ReplaceRuleNew PROTO (( void ));
NLM_EXTERN ReplaceRulePtr LIBCALL ReplaceRuleAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL ReplaceRuleAsnWrite PROTO (( ReplaceRulePtr , AsnIoPtr, AsnTypePtr));
/* following #defines are for enumerated type, not used by object loaders */
#define Fix_type_none 0
#define Fix_type_typo 1
#define Fix_type_quickfix 2
#define Fix_type_no_organelle_for_prokaryote 3
#define Fix_type_might_be_nonfunctional 4
#define Fix_type_database 5
#define Fix_type_remove_organism_name 6
#define Fix_type_inappropriate_symbol 7
#define Fix_type_evolutionary_relationship 8
#define Fix_type_use_protein 9
#define Fix_type_hypothetical 10
#define Fix_type_british 11
#define Fix_type_description 12
#define Fix_type_gene 13
/**************************************************
*
* SuspectRule
*
**************************************************/
typedef struct struct_Suspect_rule {
struct struct_Suspect_rule PNTR next;
ValNodePtr find;
ValNodePtr except;
ValNodePtr feat_constraint;
Uint2 rule_type;
struct struct_Replace_rule PNTR replace;
} SuspectRule, PNTR SuspectRulePtr;
NLM_EXTERN SuspectRulePtr LIBCALL SuspectRuleFree PROTO ((SuspectRulePtr ));
NLM_EXTERN SuspectRulePtr LIBCALL SuspectRuleNew PROTO (( void ));
NLM_EXTERN SuspectRulePtr LIBCALL SuspectRuleAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
NLM_EXTERN Boolean LIBCALL SuspectRuleAsnWrite PROTO (( SuspectRulePtr , AsnIoPtr, AsnTypePtr));
#ifdef __cplusplus
/* { */ }
#endif
#endif /* _objmacro_ */
#undef NLM_EXTERN
#ifdef NLM_EXPORT
#define NLM_EXTERN NLM_EXPORT
#else
#define NLM_EXTERN
#endif
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