/usr/include/InsightToolkit/Review/itkVoxBoCUBImageIO.h is in libinsighttoolkit3-dev 3.20.1-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 | /*=========================================================================
Program: Insight Segmentation & Registration Toolkit
Module: itkVoxBoCUBImageIO.h
Language: C++
Date: $Date$
Version: $1.0$
Copyright (c) Insight Software Consortium. All rights reserved.
See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notices for more information.
=========================================================================*/
#ifndef __itkVoxBoCUBImageIO_h
#define __itkVoxBoCUBImageIO_h
#ifdef _MSC_VER
#pragma warning ( disable : 4786 )
#endif
#include <fstream>
#include <string>
#include <map>
#include "itkImageIOBase.h"
#include "itkSpatialOrientation.h"
#include <stdio.h>
namespace itk
{
// Forward declaration
class GenericCUBFileAdaptor;
/** \class VoxBoCUBImageIO
*
* \brief Read VoxBoCUBImage file format.
*
* A generic reader and writer object for VoxBo files. Basically it
* provides uniform access to gzip and normal files
*
* \author Burstein, Pablo D.; Yushkevich, Paul; Gee, James C.
*
* This implementation was contributed as a paper to the Insight Journal
* http://insight-journal.org/midas/handle.php?handle=1926/303
*
* \ingroup IOFilters
*
*/
class ITK_EXPORT VoxBoCUBImageIO : public ImageIOBase
{
public:
/** Standard class typedefs. */
typedef VoxBoCUBImageIO Self;
typedef ImageIOBase Superclass;
typedef SmartPointer<Self> Pointer;
/** Method for creation through the object factory. */
itkNewMacro(Self);
/** Run-time type information (and related methods). */
itkTypeMacro(VoxBoCUBImageIO, Superclass);
/*-------- This part of the interfaces deals with reading data. ----- */
/** Determine the file type. Returns true if this ImageIO can read the
* file specified. */
virtual bool CanReadFile(const char*);
/** Set the spacing and dimension information for the set filename. */
virtual void ReadImageInformation();
/** Reads the data from disk into the memory buffer provided. */
virtual void Read(void* buffer);
/*-------- This part of the interfaces deals with writing data. ----- */
/** Determine the file type. Returns true if this ImageIO can write the
* file specified. */
virtual bool CanWriteFile(const char*);
/** Set the spacing and dimension information for the set filename. */
virtual void WriteImageInformation();
/** Writes the data to disk from the memory buffer provided. Make sure
* that the IORegions has been set properly. */
virtual void Write(const void* buffer);
VoxBoCUBImageIO();
~VoxBoCUBImageIO();
void PrintSelf(std::ostream& os, Indent indent) const;
private:
VoxBoCUBImageIO(const Self&); //purposely not implemented
void operator=(const Self&); //purposely not implemented
bool CheckExtension(const char*, bool &isCompressed);
GenericCUBFileAdaptor *CreateReader(const char *filename);
GenericCUBFileAdaptor *CreateWriter(const char *filename);
GenericCUBFileAdaptor *m_Reader, *m_Writer;
// Initialize the orientation map (from strings to ITK)
void InitializeOrientationMap();
// Orientation stuff
typedef SpatialOrientation::ValidCoordinateOrientationFlags OrientationFlags;
typedef std::map<std::string, OrientationFlags> OrientationMap;
typedef std::map<OrientationFlags, std::string> InverseOrientationMap;
OrientationMap m_OrientationMap;
InverseOrientationMap m_InverseOrientationMap;
// Method to swap bytes in read buffer
void SwapBytesIfNecessary(void *buffer, BufferSizeType numberOfBytes);
// Strings used in VoxBo files
static const char * m_VB_IDENTIFIER_SYSTEM;
static const char * m_VB_IDENTIFIER_FILETYPE;
static const char * m_VB_DIMENSIONS;
static const char * m_VB_SPACING;
static const char * m_VB_ORIGIN;
static const char * m_VB_DATATYPE;
static const char * m_VB_BYTEORDER;
static const char * m_VB_ORIENTATION;
static const char * m_VB_BYTEORDER_MSB;
static const char * m_VB_BYTEORDER_LSB;
static const char * m_VB_DATATYPE_BYTE;
static const char * m_VB_DATATYPE_INT;
static const char * m_VB_DATATYPE_FLOAT;
static const char * m_VB_DATATYPE_DOUBLE;
};
} // end namespace itk
#endif // __itkVoxBoCUBImageIO_h
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