libinsighttoolkit3-dev 3.20.1-1 / usr / include / InsightToolkit / IO / itkIPLCommonImageIO.h

/*=========================================================================

  Program:   Insight Segmentation & Registration Toolkit
  Module:    itkIPLCommonImageIO.h
  Language:  C++
  Date:      $Date$
  Version:   $Revision$

  Copyright (c) Insight Software Consortium. All rights reserved.
  See ITKCopyright.txt or http://www.itk.org/HTML/Copyright.htm for details.

     This software is distributed WITHOUT ANY WARRANTY; without even 
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
     PURPOSE.  See the above copyright notices for more information.

=========================================================================*/

/**
 * \file   Much of the code for this file reader/writer was taken from
 *         the University of Iowa Imaging Group library with the
 *         permission of the authors, Milan Sonka, Joseph Reinhardt,
 *         Ryan Long, Hans Johnson, Gary Christensen, and others.
 *         The specification for this file format is taken from the
 *         web site http://www.mayo.edu/bir/PDF/ANALYZE75.pdf.
 * \author Kent Williams
 *         The University of Iowa 2003
 * \brief This file was written as a modification to the itkMetaImageIO
 *        as a new method for reading in files from the GE4 scanner.
 */

#ifndef __itkIPLCommonImageIO_h
#define __itkIPLCommonImageIO_h

#include "itkImageIOBase.h"
#include "itkIPLFileNameList.h"
#include "itkGEImageHeader.h"

namespace itk
{
/** \class IPLCommonImageIO
  *
  * \author Hans J. Johnson
  * \brief Class that defines how to read GE4 file format.
  *
  * \ingroup IOFilters
  */
class ITK_EXPORT IPLCommonImageIO : public ImageIOBase
{
public:
  /** Standard class typedefs. */
  typedef IPLCommonImageIO    Self;
  typedef ImageIOBase         Superclass;
  typedef SmartPointer<Self>  Pointer;

  typedef unsigned char  U8;
  typedef signed char    S8;
  typedef unsigned short U16;
  typedef signed short   S16;
  typedef unsigned int   U32;
  typedef signed int     S32;
  typedef unsigned long  U64;
  typedef signed long    S64;
  typedef float          F32;
  typedef double         F64;

  /** Method for creation through the object factory. */
  itkNewMacro(Self);

  /** Run-time type information (and related methods). */
  itkTypeMacro(IPLCommonImageIO, Superclass);

  /*-------- This part of the interfaces deals with reading data. ----- */
  
  /** Determine if the file can be read with this ImageIO implementation.
    * \author Hans J Johnson
    * \param FileNameToRead The name of the file to test for reading.
    * \post Sets classes ImageIOBase::m_FileName variable to be FileNameToWrite
    * \return Returns true if this ImageIO can read the file specified.
    */
  virtual bool CanReadFile(const char* FileNameToRead);

  /** Set the spacing and dimension information for the set filename. */
  virtual void ReadImageInformation();

  /** Optionally, modify spacing, origin and direction */
  virtual void ModifyImageInformation() {};

  /** Get the type of the pixel.  */
  virtual const std::type_info& GetPixelTypeInfo() const;

  /** Get the component type of the pixel.  */
  virtual const std::type_info& GetComponentTypeInfo() const;
  
  /** Reads the data from disk into the memory buffer provided. */
  virtual void Read(void* buffer);

  /** Compute the size (in bytes) of the components of a pixel. For
       * example, and RGB pixel of unsigned char would have a
       * component size of 1 byte. */
  virtual unsigned int GetComponentSize() const;

  /*-------- This part of the interfaces deals with writing data. ----- */

  /** Determine if the file can be written with this ImageIO implementation.
       * \param FileNameToWrite The name of the file to test for writing.
       * \author Hans J. Johnson
       * \post Sets classes ImageIOBase::m_FileName variable to be FileNameToWrite
       * \return Returns true if this ImageIO can write the file specified.
       */
  virtual bool CanWriteFile(const char * FileNameToWrite);

  /** Set the spacing and dimension information for the set filename. */
  virtual void WriteImageInformation();

  /** Writes the data to disk from the memory buffer provided. Make sure
       * that the IORegions has been set properly. */
  virtual void Write(const void* buffer);

  /** Set sorting method by name ascending. */
  virtual void SortImageListByNameAscend();

  /** Set sorting method by name descending. */
  virtual void SortImageListByNameDescend();


protected:
  IPLCommonImageIO();
  ~IPLCommonImageIO();
  void PrintSelf(std::ostream& os, Indent indent) const;

  int AddElementToList(char const * const filename,
                       const float sliceLocation,
                       const int offset,
                       const int XDim,
                       const int YDim,
                       const int Key1,
                       const int Key2 );
  void sortImageListAscend ();
  void sortImageListDescend ();
  int statTimeToAscii (void *clock, char *timeString);
  virtual GEImageHeader *ReadHeader(const char *FileNameToRead);
  //
  // data members
  GEImageHeader         *m_ImageHeader;
  ImageIOBase::ByteOrder m_SystemByteOrder;
  IPLFileNameList       *m_FilenameList;
  //
  // return 0 on success, -1 on failure
  int GetStringAt(std::ifstream &f,std::streamoff Offset,char *buf,
                  size_t amount, bool throw_exception = true);
  int GetIntAt(std::ifstream &f,std::streamoff Offset,int *ip,
               bool throw_exception = true);
  int GetShortAt(std::ifstream &f,std::streamoff Offset,short *ip,
                 bool throw_exception = true);
  int GetFloatAt(std::ifstream &f,std::streamoff Offset,float *ip,
                 bool throw_exception = true);
  int GetDoubleAt(std::ifstream &f,std::streamoff Offset,double *ip,
                  bool throw_exception = true);

  short hdr2Short(char *hdr);
  int hdr2Int(char *hdr);
  float hdr2Float(char *hdr);
  double hdr2Double(char *hdr);
private:
  IPLCommonImageIO(const Self&); //purposely not implemented
  void operator=(const Self&); //purposely not implemented
};

} // end namespace itk
#define RAISE_EXCEPTION() \
        { ExceptionObject exception(__FILE__, __LINE__); \
        exception.SetDescription("File cannot be read"); \
        throw exception; }

#define IOCHECK() \
      if(f.fail()) \
      { \
  if(f.is_open()) \
    f.close(); \
  RAISE_EXCEPTION(); \
      }


#endif // __itkAnalyzeImageIO_h