libgofigure-dev 0.9.0-1 / usr / include / gofigure2 / QGoPrintDatabase.h

/*=========================================================================
 Authors: The GoFigure Dev. Team.
 at Megason Lab, Systems biology, Harvard Medical school, 2009-11

 Copyright (c) 2009-11, President and Fellows of Harvard College.
 All rights reserved.

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 this list of conditions and the following disclaimer.
 Redistributions in binary form must reproduce the above copyright notice,
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 and/or other materials provided with the distribution.
 Neither the name of the  President and Fellows of Harvard College
 nor the names of its contributors may be used to endorse or promote
 products derived from this software without specific prior written
 permission.

 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
 THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
 PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS
 BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY,
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=========================================================================*/
#ifndef __QGoPrintDatabase_h
#define __QGoPrintDatabase_h

#include <QDockWidget>
#include <QTableWidget>
#include <QColor>
#include <string>
#include <QStackedWidget>
#include "MegaVTK2Configure.h"
#include "GoDBRecordSet.h"
#include "GoDBContourRow.h"
#include "vtkMySQLDatabase.h"
#include "vtkPolyData.h"
#include "GoDBTraceInfoForVisu.h"
#include "ContourMeshStructure.h"
#include "TraceInfoStructure.h"
#include "QGoDBBookmarkManager.h"
#include "QGoGUILibConfigure.h"
#include "GoFigureMeshAttributes.h"
#include "QGoTraceSettingsWidget.h"
#include "QGoDBCellTypeManager.h"
#include "QGoDBSubCellTypeManager.h"
#include "QGoDBColorManager.h"
#include "QGoDBMeshManager.h"
#include "QGoDBContourManager.h"
#include "QGoDBTrackManager.h"
#include "QGoDBLineageManager.h"
#include "ContourContainer.h"
#include "MeshContainer.h"
#include "TrackContainer.h"
#include "QGoDockWidget.h"
/**
\defgroup DB Database
\defgroup GUI GUI
*/

/**
\class QGoPrintDatabase
\brief manages all the database components: table widget, trace settings editing widdet,
QGoDBTraceManager...
\ingroup DB GUI
*/
class QGOGUILIB_EXPORT QGoPrintDatabase:public QGoDockWidget
{
  Q_OBJECT
public:

  /** \brief Constructor */
  explicit QGoPrintDatabase(QWidget *iParent = 0);

  /** \brief Destructor */
  virtual ~QGoPrintDatabase();

  typedef GoDBCollectionOfTraces::TWContainerType            TWContainerType;
  typedef QGoDBBookmarkManager::NamesDescrContainerType      NamesDescrContainerType;
  typedef QGoTraceSettingsWidget::ItemColorComboboxData  ItemColorComboboxData;
  typedef std::pair< int, QColor >                           IDWithColorData;

  /** \brief set all the values needed for the database*/
  void SetDatabaseVariables(
    const std::string & iNameDB, const std::string & iServer,
    const std::string & iUser, const std::string & iPassword,
    const unsigned int & iImgSessionID, const std::string & iImgSessionName);

  /** \brief Create the QTableWidgetChild,get the columns names and the
 * values stored in the database, display them in the QTableWidgetChild
 * and fill the info for the contours and meshes*/
  void FillTableFromDatabase( const unsigned int& iTreshold);

  /** \brief Return a vector of all the contours for the given timepoint*/
  std::vector< ContourMeshStructure > GetContoursForAGivenTimepoint(
    unsigned int iTimePoint);

  /** \brief Return a vector of all the meshes for the given timepoint*/
  std::vector< ContourMeshStructure > GetMeshesForAGivenTimepoint(
    unsigned int iTimePoint);

  /**
  \brief save a new contour from the visu into the database, update
  the table widget and the CurrentElement of the visu container if reeditMode
  is set to false; if not, update the contour in the DB and in the TW, for
  both modes, update the mesh the contour is part of.
  */
  void SaveContoursFromVisuInDB(unsigned int iXCoordMin,
                                unsigned int iYCoordMin, unsigned int iZCoordMin, unsigned int iTCoord,
                                unsigned int iXCoordMax, unsigned int iYCoordMax, unsigned int iZCoordMax,
                                vtkPolyData *iContourNodes);

  /**
  \brief save the mesh into the database for a mesh generated in the
  visualization, if the mesh is an updated mesh which already exists(for
  example a new contour is added to this mesh, the NewMesh has to be set
  to false
  \param[in] iTrackID Track ID we want the mesh to belong to.
   if -1, we get the track ID from the trace editing widget.
  */
  void SaveMeshFromVisuInDB(unsigned int iXCoordMin,
                            unsigned int iYCoordMin,
                            unsigned int iZCoordMin,
                            unsigned int iXCoordMax,
                            unsigned int iYCoordMax,
                            unsigned int iZCoordMax,
                            int iTCoord,
                            vtkPolyData *iMeshNodes,
                            GoFigureMeshAttributes *iMeshAttributes,
                            int iTrackID = -1);

  /**
  \brief save a new contour in the database, the TW and the container for the contours to sphere
  action
  \param[in] iXCoordMin xcoord of the minimum for the boundingbox
  \param[in] iYCoordMin ycoord of the minimum for the boundingbox
  \param[in] iZCoordMin zcoord of the minimum for the boundingbox
  \param[in] iXCoordMax xcoord of the maximum for the boundingbox
  \param[in] iYCoordMax ycoord of the maximum for the boundingbox
  \param[in] iZCoordMax zcoord of the maximum for the boundingbox
  \param[in] iTraceNodes nodes to be saved as points in the database
  \return    unsigned int ID of the new created contour
  */
  unsigned int SaveNewContourForMeshToContours(unsigned int iXCoordMin,
                                               unsigned int iYCoordMin,
                                               unsigned int iZCoordMin,
                                               unsigned int iXCoordMax,
                                               unsigned int iYCoordMax,
                                               unsigned int iZCoordMax,
                                               vtkPolyData *iTraceNodes);

  void AddBookmark(int iXCoord, int iYCoord,
                   int iZCoord, int iTCoord);

  /** \brief Return the Name of the tab currently used in the table widget,
 * which correspond to the TraceName of the CollectionOfTraces: */
  std::string InWhichTableAreWe();

  NamesDescrContainerType GetListBookmarks();

  GoDBCoordinateRow GetCoordinateForBookmark(std::string iName);

  /** \brief return a bool to know if the user is using the database or
 * not*/
  bool IsDatabaseUsed();

  //QAction * toggleViewAction();

  /**
  \brief get the info from a textfile, save it into the database,
  update the container for visu and the TW
  */
  void ImportContours();

  /**
  \brief get the info from a textfile, save it into the database,
  update the container for visu and the TW
  */
  void ImportMeshes();

  /**
  \brief get the info from a textfile, save it into the database,
  update the container for visu and the TW and recalculate the points
  for the tracks
  \return all the new trackIDs
  */
  std::vector<int> ImportTracks();

  /**
  \brief display in the table widget the volume and area from iMeshAttributes
  for iMeshID
  \param[in] iMeshAttributes contains the values to be displayed
  \param[in] iMeshID ID of the mesh
  */
  void PrintVolumeAreaForMesh(GoFigureMeshAttributes *
                              iMeshAttributes, unsigned int iMeshID);

  /**
  \brief display in the table widget the values from iTrackAttributes
  for iTrackID
  \param[in] iTrackAttributes contains the values to be displayed
  \param[in] iTrackID ID of the track
  */
  void PrintCalculatedValuesForTrack(GoFigureTrackAttributes *
                        iTrackAttributes, unsigned int iTrackID);

  /** \brief return the TraceSettingsDockWidget*/
  QGoTraceSettingsWidget*  GetTraceSettingsWidget();

  QGoTraceSettingsWidget*  GetTraceSettingsWidgetForToolBar();

  /**
  \brief update the traceSettingswidget for the trace with the
  corresponding list of collectionID and set the tablewidget for the
  trace table
  \param[in] iTraceName name of the corresponding trace
  */
  void SetTraceNameForTableWidget(std::string iTraceName);

  /** \brief Initialize or reinitialized the celltype,subcelltype
  and color list from the database into the traceSettingswidget*/
  void InitializeTheComboboxesNotTraceRelated();

  /**
  \brief set the pointer m_TraceInfoForVisu of the ContoursManager to
  iContoursContainer
  \param[in] iContoursContainer pointer for the container of contours
  for the visu
  */
  void SetContoursContainer(ContourContainer *iContoursContainer);

  /**
  \brief set the pointer m_TraceInfoForVisu of the MeshesManager to
  iMeshesContainer
  \param[in] iMeshesContainer pointer for the container of meshes
  for the visu
  */
  void SetMeshesContainer(MeshContainer *iMeshesContainer);

  /**
  \brief set the pointer m_TrackInfoForVisu of the TracksManager to
  iTracksContainer
  \param[in] iContainer pointer for the container of tracks
  for the visu
  */
  void SetTracksContainer(TrackContainer *iContainer);

  /**
  \brief set the pointer m_LineageInfoForVisu of the LineagesManager to
  iContainer
  \param[in] iContainer pointer for the container of lineages
  for the visu
  \Param[in] iTrackContainer pointer for the container of tracks
  */
  void SetLineagesContainers(LineageContainer *iContainer,
    TrackContainer *iTrackContainer);

  /**
  \brief check if the tracesettingsWidget is visible, if not,
  return true.
  */
  bool NeedTraceSettingsToolBarVisible();

  /**
    \brief Update the table widget and the visualization container contents
    based on the given time point and the previous visible time points.
    It erases actors and remove them from the visualization.
    It doesn't create actors after adding polydata to container.
    */
  std::list<unsigned int> UpdateTableWidgetAndContainersForGivenTimePoint(
          const unsigned int& iNewTimePoint);

  std::list<unsigned int> GetVisibleTimePoints();

  int GetNumberOfElementForTraceAndTimePoint(std::string iTrace, int iTimePoint);

public slots:
  void DeleteBookmarks();

  //void SetTable(std::string iTablename);

  void ExportContours();

  void ExportMeshes();

  void UpdateSelectedTimePoint(int iTimePoint);

  void SaveNewMeshForMeshToContours(int iNumberOfContours);

signals:
  void PrintDBReady();

  void DBVariablesSet();

  void TraceToReEdit(unsigned int);

  void OpenBookmarksToUpdate();

  void NewMeshToGenerate(std::list< unsigned int > ListContourIDs, int iNewMeshID);

  /**
  \brief signal emitted when a signal is emitted from a m_TraceManager for
  "go to the trace " from the context menu
  */
  void NeedToGoToTheLocation(int XCoord, int YCoord, int ZCoord, int TCoord);

  void NeedToGoToTheRealLocation(double XCoord, double YCoord, double ZCoord, int TCoord);

  void PrintMessage(QString iMessage, int iTimeOut = 0);

protected:
  //related to 3dwt:
  int*                  m_SelectedTimePoint;
  QGoDBBookmarkManager* m_BookmarkManager;

  //related to TraceSettings Widget:
  QGoDBCellTypeManager*             m_CellTypeManager;
  QGoDBSubCellTypeManager*          m_SubCellTypeManager;
  QGoDBColorManager*                m_ColorManager;
  QGoTraceSettingsWidget*           m_TraceSettingsWidget;
  QGoTraceSettingsWidget*           m_TraceSettingsWidgetForToolBar;

  QGoDBContourManager*              m_ContoursManager;
  QGoDBMeshManager*                 m_MeshesManager;
  QGoDBTrackManager*                m_TracksManager;
  QGoDBLineageManager*              m_LineagesManager;
  QStackedWidget*                   m_StackedTables;

  //Database variables:
  vtkMySQLDatabase* m_DatabaseConnector;
  std::string       m_Server;
  std::string       m_User;
  std::string       m_Password;
  std::string       m_DBName;
  unsigned int      m_ImgSessionID;
  std::string       m_ImgSessionName;
  bool              m_IsDatabaseUsed;

  bool m_ReeditMode;
  bool m_MeshGenerationMode;
  bool m_TraceSettingsVisible;

  void OpenDBConnection();

  void SetUpUi();

  /**
  \brief set the tracesettings widget to be in the mainwindow toolbar and the connection
  between the 2 instances of tracesettingswidget
  */
  void SetConnectionsBetweenTheInstancesOfTraceSettings();
  /**
  \brief create the m_ContoursManager and its SLOT/SIGNAL connection
  */
  void SetContoursManager();

  /**
 \brief create the m_MeshesManager and its SLOT/SIGNAL connection
 */
  void SetMeshesManager();

  /**
 \brief create the m_TracksManager and its SLOT/SIGNAL connection
 */
  void SetTracksManager();

  /**
 \brief create the m_LineagesManager and its SLOT/SIGNAL connection
 */
  void SetLineagesManager();

  //******************Methods related to Trace Settings Editing Widget***********

  /**
  \brief create all the connections between the QGoPrintDatabase and the
  QGoTraceSettingsWidget (TS)
  */
  void CreateConnectionsForTraceSettingsWidget(QGoTraceSettingsWidget* iTraceSettingsWidget);

  /**
  \brief get the list of celltypes from the database, put them in
  the Trace Settings combobox and if the string is not empty, the combobox will have as
  selected item the string
  \param[in] iCellTypeToSelect name of the celltype to be selected
  */
  void SetTSListCellTypes(std::string iCellTypeToSelect = "");

  /**
  \brief get the list of celltypes from the database, put them in
  the Trace Settings combobox and the combobox will have as selected item the one
  previously selected
  */
  void SetTSListCellTypesWithPreviousSelectedOne();

  /**
  \brief get the list of subcelltypes from the database, put them in
  the Trace Settings combobox and if the string is not empty, the combobox will have as
  selected item the string
  \param[in] iSubCellTypeToSelect name of the subcelltype to be selected
  */
  void SetTSListSubCellTypes(std::string iSubCellTypeToSelect = "");

  /**
  \brief get the list of subcelltypes from the database, put them in
  the Trace Settings combobox and the combobox will have as selected item the one
  previously selected
  */
  void SetTSListSubCellTypesWithPreviousSelectedOne();

  /**
  \brief get the data for the colorcombobox from the database,
  put them in the Trace Settings colorcombobox and if the string is not empty,
  the combobox will have as selected item the string
  \param[in] iColorToSelect name of the color to be selected in the combobox
  */
  void SetTSListColors(std::string iColorToSelect = "");

  /**
  \brief get the list of colors from the database, put them in
  the Trace Settings combobox and the combobox will have as selected item the one
  previously selected
  */
  void SetTSListColorsWithPreviousSelectedOne();

  //******************End of Methods related to Trace Settings Editing
  // Widget***********

  /**
  \brief get the collection id with their corresponding color from the database
  \param[in] iDatabaseConnector connection to the database
  \param[in] ioIDToSelect ID to be selected in the combobox
  */
  std::list< ItemColorComboboxData > GetListCollectionIDFromDB(
    vtkMySQLDatabase *iDatabaseConnector, std::string & ioIDToSelect);

  //void closeEvent(QCloseEvent *event);

  /**
  \brief set all the traces manager
  */
  void SetTracesManager();

  /**
  \brief get the data from the database for contours, meshes and tracks, display
  them in the TableWidget and load the different containers for the visu with
  the info from the database
  */
  void GetContentAndDisplayAllTracesInfo(vtkMySQLDatabase *iDatabaseConnector);

  void GetContentAndDisplayAllTracesInfoFor3TPs(vtkMySQLDatabase *iDatabaseConnector);

  void RemoveTracesFromListTimePoints(
  vtkMySQLDatabase *iDatabaseConnector, std::list<unsigned int> iListTimePoints);

  /**
  \brief get the RGB Alpha values from the iTraceRow and set a QColor with them
  \tparam T any children of GoDBTraceRow
  \param[in] iTraceRow the trace from which the QColor is created
  \param[in] iDatabaseConnector connection to the database
  \return QColor with the values corresponding to the color values of the iTraceRow
  */
  /*template< typename T >
  QColor GetQColorFromTraceRow(T iTraceRow, vtkMySQLDatabase *iDatabaseConnector)
  {
    GoDBColorRow ColorRow;

    ColorRow.SetValuesForSpecificID(iTraceRow.GetMapValue<int>("ColorID"),
                                    iDatabaseConnector);
    QColor Color( ColorRow.GetMapValue<int>("Red"),
                  ColorRow.GetMapValue<int>("Green"),
                  ColorRow.GetMapValue<int>("Blue"),
                  ColorRow.GetMapValue<int>("Alpha") );
    return Color;
  }
*/
  /**
  \brief set the color of the traceRow according to the iColor
  \param[in,out] ioRow traceRow with the color to be set up
  \param[in] iColor color for the traceRow
  \tparam T children of GoDBTraceRow
  */
  template< typename T >
  void SetTheColorForTheRow(T & ioRow, QColor iColor)
  {
    ioRow.SetField( "Red", iColor.red() );
    ioRow.SetField( "Green", iColor.green() );
    ioRow.SetField( "Blue", iColor.blue() );
    ioRow.SetField( "Alpha", iColor.alpha() );
  }

  /**
  \brief update the color for the checked traces and the rows in the table widget
  for the collectionOf
  \param[in] iTraceManager manager for the trace (expl: mesh)
  \param[in] iCollectionOfManager manager for the collectionOf (expl:contour)
  \tparam TTrace children of QGoDBTraceManager
  \tparam TCollection children of QGoDBTraceManager
  */
  template< typename TTrace, typename TCollection >
  void ChangeTraceColor(TTrace *iTraceManager,
                        TCollection *iCollectionOfManager)
  {
    this->OpenDBConnection();
    //update everything for the traces and get the list of collection ID they
    //are collection of:
    std::list< unsigned int > ListCollectionOfIDsToUpdate =
      iTraceManager->UpdateTheTracesColor(this->m_DatabaseConnector);//, *this->m_SelectedColorData);
    iCollectionOfManager->DisplayInfoForExistingTraces(this->m_DatabaseConnector,
                                                       ListCollectionOfIDsToUpdate);
    this->CloseDBConnection();
  }

  /** todo once lineage container is set up, the bool track needs to be
    removed*/
  /**
  \brief delete the checked traces from the database,TW,visu container,
  udpate the collectionof collectionID in database and TW and update the
  bounding box of the collection
  \param[in] iTraceManager the manager for the trace expl: mesh_manager
  \param[in] iCollectionManager the manager for the collection expl: track
  \param[in] iCollectionOfManager the manager for the collectioof expl: contour
  \param[in] track if the trace is track, track is set to true
  \tparam TTrace children of QGoDBTraceManager
  \tparam TCollection children of QGoDBTraceManager
  */
  template< typename TTrace, typename TCollection, typename TCollectionOf >
  void DeleteCheckedTraces(TTrace *iTraceManager,
                    TCollection *iCollectionManager, TCollectionOf *iCollectionOfManager,
                    bool lineage = false)
                    //bool track = false)
  {
    std::list< unsigned int > ListTracesToDelete =
      iTraceManager->GetListHighlightedIDs();
    std::list<unsigned int> ListCollectionsIDs =
      this->UpdateCollectionDataForTracesToBeDeleted<TTrace, TCollectionOf>
      (iTraceManager, iCollectionOfManager, ListTracesToDelete);
    this->OpenDBConnection();
    iTraceManager->DeleteCheckedTraces(this->m_DatabaseConnector);

    if ( !ListCollectionsIDs.empty() || !lineage )
      {
      this->OpenDBConnection(); //in some cases the DeleteCheckedTraces closes the connection
      iCollectionManager->UpdateBoundingBoxes(this->m_DatabaseConnector, ListCollectionsIDs);
      }
    this->CloseDBConnection();
  }

  /**
  \brief delete the traces of iListTracesToDelete from the database,TW,
  visu container, udpate the collectionof collectionID in database and TW and update the
  bounding box of the collection
  \param[in] iTraceManager the manager for the trace expl: mesh_manager
  \param[in] iCollectionManager the manager for the collection expl: track
  \param[in] iCollectionOfManager the manager for the collectioof expl: contour
  \param[in] iListTracesToDelete list of the traceIDs to be deleted
  \param[in] track if the trace is track, track is set to true
  \tparam TTrace children of QGoDBTraceManager
  \tparam TCollection children of QGoDBTraceManager
  */
  template< typename TTrace, typename TCollection, typename TCollectionOf >
  void DeleteListTraces(TTrace *iTraceManager,
                    TCollection *iCollectionManager, TCollectionOf *iCollectionOfManager,
                    std::list<unsigned int> iListTracesToDelete,
                    bool lineage = false)
  {
    std::list<unsigned int> ListCollectionsIDs =
      this->UpdateCollectionDataForTracesToBeDeleted<TTrace, TCollectionOf>
      (iTraceManager, iCollectionOfManager, iListTracesToDelete);
    this->OpenDBConnection();
    iTraceManager->DeleteListTraces(this->m_DatabaseConnector, iListTracesToDelete);

    if ( !ListCollectionsIDs.empty() || !lineage )
      {
      iCollectionManager->UpdateBoundingBoxes(this->m_DatabaseConnector, ListCollectionsIDs);
      }
    this->CloseDBConnection();
  }
  /**
  \brief udpate the collectionof collectionID in database and TW
  \param[in] iTraceManager the manager for the trace expl: mesh_manager
  \param[in] iCollectionOfManager the manager for the collectioof expl: contour
  \param[in] iListTracesToDelete list of the traceIDs to be deleted
  \tparam TTrace children of QGoDBTraceManager
  \tparam TCollectionOf children of QGoDBTraceManager
  */
  template< typename TTrace, typename TCollectionOf >
  std::list<unsigned int> UpdateCollectionDataForTracesToBeDeleted(TTrace *iTraceManager,
                        TCollectionOf *iCollectionOfManager,
                        std::list<unsigned int> iListTracesToDelete)
  {
    this->OpenDBConnection();
    //need to get all the needed data from the traces before deleting them:
    std::list< unsigned int > ListCollectionsIDs =
      iTraceManager->GetListCollectionIDs(this->m_DatabaseConnector, iListTracesToDelete);
    std::list< unsigned int > ListTracesAsCollectionOf =
      iTraceManager->GetListTracesIDsFromThisCollectionOf(this->m_DatabaseConnector,
                                                          iListTracesToDelete);
    if ( !ListTracesAsCollectionOf.empty() )
      {
      iCollectionOfManager->UpdateCollectionID(this->m_DatabaseConnector,
                                               ListTracesAsCollectionOf, 0);
      }
    this->CloseDBConnection();
    return ListCollectionsIDs;
  }
  /**
  \brief change the collectionIDs to iCollectionID for the traces in iListCheckedTraces,
  and update the bounding boxes of the previous collection the traces were part of
  and of iCollectionID in the database, the TW and the container for visu
  \param[in] iTraceManager the manager for the trace expl: mesh_manager
  \param[in] iCollectionManager the manager for the collection expl: track
  \param[in] iCollectionID the ID of the collection the checked traces will be part of
  \param[in] iListCheckedTraces List of the tracesIDs checked in the TW
  \tparam TTrace children of QGoDBTraceManager
  \tparam TCollection children of QGoDBTraceManager
  */
  template< typename TTrace, typename TCollection >
  void AddCheckedTracesToCollection(
    TTrace *iTraceManager,
    TCollection *iCollectionManager, unsigned int iCollectionID,
    std::list< unsigned int > iListCheckedTraces)
  {
    this->OpenDBConnection();
    //get the list of CollectionIDs that will be updated:
    std::list< unsigned int > ListCollectionIDsToUpdate =
      iTraceManager->GetListCollectionIDs(this->m_DatabaseConnector,
                                          iListCheckedTraces);

    iTraceManager->UpdateCollectionID(this->m_DatabaseConnector,
                                      iListCheckedTraces, iCollectionID);

    if (iCollectionID != 0)
      {
      ListCollectionIDsToUpdate.push_back(iCollectionID);
      }
    iCollectionManager->UpdateBoundingBoxes(this->m_DatabaseConnector,
                                            ListCollectionIDsToUpdate);
  this->CloseDBConnection();
  }

  void UpdateSelectedCollectionForTableWidget(std::string iTableName);

//-------------------------------------------------------------------------

//-------------------------------------------------------------------------
protected slots:
  void CreateContextMenu(const QPoint & iPos);

  /**
  \brief show/hide the Trace Settings widget depending on the checkstate of
  the action in the context menu of the dockwidget
  */
  void ShowHideTraceSettingsFromContextMenu(bool isVisible);

  /**
  \brief slot connected to the combobox for the trace in the trace settings widget
  */
  void TheTraceHasChanged(int iIndex);

  /**
  \brief get a list of the IDs with their colors for the collection corresponding to
  the tracename, for the given timepoint if the
  collection is a mesh or for all timepoints for tracks and lineages,
  update the Trace Settings colorcombobox and select the corresponding ID in the combobox
  if the string is not empty
  */
  void SetTSListCollectionID();

  /**
  \brief open the connection to the database and pass it to the ContoursManager
  */
  void PassDBConnectionToContoursManager();

   /**
  \brief open the connection to the database and pass it to the MeshesManager
  */
  void PassDBConnectionToMeshesManager();

   /**
  \brief open the connection to the database and pass it to the TracksManager
  */
  void PassDBConnectionToTracksManager();

   /**
  \brief open the connection to the database and pass it to the LineagesManager
  */
  void PassDBConnectionToLineagesManager();

  void CloseDBConnection();
  /**
  \brief slot connected to the TraceColorToChange() emitted by the
  m_MeshesManager
  */
  void ChangeMeshColor();

  /**
  \brief slot connected to the TraceColorToChange() emitted by the
  m_MeshesManager
  */
  void ChangeTrackColor();

  /**
  \brief slot connected to the TraceColorToChange() emitted by the
  m_MeshesManager
  */
  void ChangeLineageColor();

  /**
  \brief slot connected to the signal TracesToDelete() emitted by the
  m_ContoursManager
  */
  void DeleteCheckedContours();

  /**
  \brief slot connected to the signal Traces TracesToDelete() emitted by the
  m_MeshesManager
  */
  void DeleteCheckedMeshes();

  /**
  \brief slot connected to the signal TracesToDelete() emitted by the
  m_TracksManager
  */
  void DeleteCheckedTracks();

  /**
  \brief slot connected to the signal TracesToDelete() emitted by the
  m_LineagesManager
  */
  void DeleteCheckedLineages();

  /**
  \brief create a new track and call the AddCheckedTracesToCollection template method
  to add the meshes from the list to this new track
  \param[in] iListMeshes list of the meshIDs to belong to the new track
  */
  void CreateNewTrackFromListMeshes(std::list< unsigned int > iListMeshes);

  /**
  \overload
  */
  void CreateNewTrackFromListMeshes(
    std::list<std::list<unsigned int> > iListsCheckedMeshes);

  /**
  \brief slot connected to the signal NewCollectionFromCheckedTraces() emitted by
  the m_ContoursManager, emit the signal NewMeshToGenerate for the visu
  after creating a new mesh and calling the AddCheckedTracesToCollection
  template method.
  \param[in] iListCheckedContours list of the meshIDs of the checked meshes in the TW
  */
  void CreateNewMeshFromCheckedContours(std::list< unsigned int > iListCheckedContours);

  /**
  \brief slot connected to the signal NewLineageToCreateFromTracks() emitted by
  the m_TracksManager
  \param[in] iListTracks list of the tracksIDs to be part of the new lineage
  \param[in] iTrackIDRoot ID of the track to be the root of the new lineage to be created
  \param[in] iLineagesToDelete
  */
  void CreateNewLineageFromTracks(std::list< unsigned int > iListCheckedTracks,
    unsigned int iTrackIDRoot, std::list<unsigned int> iLineagesToDelete);

  /**
  \brief slot connected to the the signal CheckedTracesToAddToSelectedCollection
  emitted by m_ContoursManager, which call the AddCheckedTracesToCollection template
  \param[in] iListCheckedContours list of the checked contours to be part of the
  selected meshID
  */
  void AddCheckedContoursToSelectedMesh(std::list< unsigned int > iListCheckedContours);

  /**
  \brief slot connected to the the signal CheckedTracesToAddToSelectedCollection
  emitted by m_MeshesManager, which call the AddCheckedTracesToCollection template
  \param[in] iListCheckedMeshes list of the checked meshes to be part of the
  selected trackID
  */
  void AddCheckedMeshesToSelectedTrack(std::list< unsigned int > iListCheckedMeshes);

  /**
  \brief call the AddCheckedTracesToCollection template and give the info to the
  lineages manager to create the division in the visu
  \param[in] iLineageID
  \param[in] iListDaughters ID of the tracks to be updated with lineageID
  \param[in] iListLineagesToDelete list of lineageID that need to be deleted as they
  don't have any tracks belonging to them anymore
  */
  void AddCheckedTracksToSelectedLineage(
    std::list<unsigned int> iListDaughters, unsigned int iLineageID,
    std::list<unsigned int> iListLineagesToDelete);

  /**
  \brief emit a signal TraceToReedit and set m_ReeditMode to true
  \param[in] iTraceID ID of the trace to reedit
  */
  void ReEditTrace(unsigned int iTraceID);

  /**
  \brief get the info needed for track from the meshcontainer,
  and update the points of the track container (for imported tracks)
  \param[in] iTrackID track ID for which the points will
  be recalculated
  */
  void PassMeshesInfoForImportedTrack(unsigned int iTrackID);

  /**
  \brief split the checked track: a new track is created with the checked mesh
  and the meshes with timepoint sup and the checked track is updated.
  \param[in] iTrackID ID for the checked track
  \param[in] iListMeshIDs meshes belonging to the iTrackID before the split
  */
  void SplitTheTrack(unsigned int iTrackID, std::list<unsigned int> iListMeshIDs);

  /**
  \brief slot called after signal TrackIDToBeModifiedWithWidget sent by
  tracksManager, display the checked tracks in a widget allowing the user to
  split and merge them and save the results in the database if the user clicks
  the OK button
  \param[in] iTrackIDs checked tracks
  */
  void SplitMergeTracksWithWidget(std::list<unsigned int> iTrackIDs);

  /**
  \brief add the meshes to the iTrackID after checking that there are no
  meshes at the same timepoint in the same track, if so, won't change the
  trackid of these meshes
  \param[in] iListMeshes list of the meshes to be part of the itrackID
  \param[in] iTrackID new track to be assigned to these meshes
  */
  void AddListMeshesToATrack(std::list< unsigned int > iListMeshes, unsigned int iTrackID);

  /**
  \overload
  */
  void AddListMeshesToATrack(
    std::map<unsigned int, std::list<unsigned int> > iListMeshesWithTracks);

  //*********************Slots for
  // TraceManualEditingWidget:**************************
  /**
  \brief Add the new collection in the database,add a row in TW
  and update the colorcombobox
  */
  void SaveNewCollectionFromTraceWidgetInDBAndTW();

  /**
  \brief call the m_CellTypeManager to add a new celltype (ask the user to enter
  name+description and save it in the database) and call the setListCelltype to
  update the list in the TraceManualEditingWidget
  */
  void AddNewCellType();

  /**
  \brief call the m_SubCellTypeManager to add a new subcelltype (ask the user to enter
  name+description and save it in the database) and call the setListSubCelltype to
  update the list in the TraceManualEditingWidget
  */
  void AddNewSubCellType();

  /**
  \brief call the m_ColorManager to add a new color (ask the user to choose the
  color +enter name+description and save it in the database) and call the
  SetColorComboBoxInfofromDB to update the list in the TraceManualEditingWidget
  */
  void AddNewColor();

  /**
  \brief call the m_CellTypeManager to delete celltypes (display all the
  celltypes for the user to select the ones he wants to delete and delete them
  from the database) and call the setListCelltype to update the list in
  the TraceManualEditingWidget
  */
  void DeleteCellType();

  /**
  \brief call the m_SubCellTypeManager to delete subcelltypes (display all the
  subcelltypes for the user to select the ones he wants to delete and delete them
  from the database) and call the setListSubCelltype to update the list in
  the TraceManualEditingWidget
  */
  void DeleteSubCellType();

  /**
  \brief call the m_ColorManager to delete colors (display all the
  colors for the user to select the ones he wants to delete and delete them
  from the database) and call the SetColorComboBoxInfofromDB to update the
  list in the TraceManualEditingWidget
  */
  void DeleteColor();

  //**********************End TraceSettingsWidget slots // related****************
private:
  std::list<unsigned int> m_VisibleTimePoints;
  Q_DISABLE_COPY(QGoPrintDatabase);
};

#endif