libdcmtk2-dev 3.6.0-9 / usr / include / dcmtk / dcmjpls / djcodece.h

/*
 *
 *  Copyright (C) 2007-2010, OFFIS e.V.
 *  All rights reserved.  See COPYRIGHT file for details.
 *
 *  This software and supporting documentation were developed by
 *
 *    OFFIS e.V.
 *    R&D Division Health
 *    Escherweg 2
 *    D-26121 Oldenburg, Germany
 *
 *
 *  Module:  dcmjpls
 *
 *  Author:  Martin Willkomm, Uli Schlachter
 *
 *  Purpose: codec classes for JPEG-LS encoders.
 *
 *  Last Update:      $Author: joergr $
 *  Update Date:      $Date: 2010-10-14 13:17:19 $
 *  CVS/RCS Revision: $Revision: 1.8 $
 *  Status:           $State: Exp $
 *
 *  CVS/RCS Log at end of file
 *
 */

#ifndef DCMJPLS_DJCODEC_H
#define DCMJPLS_DJCODEC_H

#include "dcmtk/config/osconfig.h"
#include "dcmtk/dcmdata/dccodec.h"  /* for class DcmCodec */
#include "dcmtk/dcmdata/dcofsetl.h" /* for struct DcmOffsetList */
#include "dcmtk/ofstd/ofstring.h"   /* for class OFString */

class DJLSRepresentationParameter;
class DJLSCodecParameter;
class DicomImage;

/** abstract codec class for JPEG-LS encoders.
 *  This abstract class contains most of the application logic
 *  needed for a dcmdata codec object that implements a JPEG-LS encoder
 *  This class only supports compression, it neither implements
 *  decoding nor transcoding.
 */
class DJLSEncoderBase : public DcmCodec
{
public:

  /// default constructor
  DJLSEncoderBase();

  /// destructor
  virtual ~DJLSEncoderBase();

  /** decompresses the given pixel sequence and
   *  stores the result in the given uncompressedPixelData element.
   *  @param fromRepParam current representation parameter of compressed data, may be NULL
   *  @param pixSeq compressed pixel sequence
   *  @param uncompressedPixelData uncompressed pixel data stored in this element
   *  @param cp codec parameters for this codec
   *  @param objStack stack pointing to the location of the pixel data
   *    element in the current dataset.
   *  @return EC_Normal if successful, an error code otherwise.
   */
  virtual OFCondition decode(
    const DcmRepresentationParameter * fromRepParam,
    DcmPixelSequence * pixSeq,
    DcmPolymorphOBOW& uncompressedPixelData,
    const DcmCodecParameter * cp,
    const DcmStack& objStack) const;

  /** decompresses a single frame from the given pixel sequence and
   *  stores the result in the given buffer.
   *  @param fromParam representation parameter of current compressed
   *    representation, may be NULL.
   *  @param fromPixSeq compressed pixel sequence
   *  @param cp codec parameters for this codec
   *  @param dataset pointer to dataset in which pixel data element is contained
   *  @param frameNo number of frame, starting with 0 for the first frame
   *  @param startFragment index of the compressed fragment that contains
   *    all or the first part of the compressed bitstream for the given frameNo.
   *    Upon successful return this parameter is updated to contain the index
   *    of the first compressed fragment of the next frame.
   *    When unknown, zero should be passed. In this case the decompression
   *    algorithm will try to determine the index by itself, which will always
   *    work if frames are decompressed in increasing order from first to last,
   *    but may fail if frames are decompressed in random order, multiple fragments
   *    per frame and multiple frames are present in the dataset, and the offset
   *    table is empty.
   *  @param buffer pointer to buffer where frame is to be stored
   *  @param bufSize size of buffer in bytes
   *  @param decompressedColorModel upon successful return, the color model
   *    of the decompressed image (which may be different from the one used
   *    in the compressed images) is returned in this parameter.
   *  @return EC_Normal if successful, an error code otherwise.
   */
  virtual OFCondition decodeFrame(
    const DcmRepresentationParameter * fromParam,
    DcmPixelSequence * fromPixSeq,
    const DcmCodecParameter * cp,
    DcmItem *dataset,
    Uint32 frameNo,
    Uint32& startFragment,
    void *buffer,
    Uint32 bufSize,
    OFString& decompressedColorModel) const;

  /** compresses the given uncompressed DICOM image and stores
   *  the result in the given pixSeq element.
   *  @param pixelData pointer to the uncompressed image data in OW format
   *    and local byte order
   *  @param length of the pixel data field in bytes
   *  @param toRepParam representation parameter describing the desired
   *    compressed representation (e.g. JPEG quality)
   *  @param pixSeq compressed pixel sequence (pointer to new DcmPixelSequence object
   *    allocated on heap) returned in this parameter upon success.
   *  @param cp codec parameters for this codec
   *  @param objStack stack pointing to the location of the pixel data
   *    element in the current dataset.
   *  @return EC_Normal if successful, an error code otherwise.
   */
  virtual OFCondition encode(
    const Uint16 * pixelData,
    const Uint32 length,
    const DcmRepresentationParameter * toRepParam,
    DcmPixelSequence * & pixSeq,
    const DcmCodecParameter *cp,
    DcmStack & objStack) const;

  /** transcodes (re-compresses) the given compressed DICOM image and stores
   *  the result in the given toPixSeq element.
   *  @param fromRepType current transfer syntax of the compressed image
   *  @param fromRepParam current representation parameter of compressed data, may be NULL
   *  @param fromPixSeq compressed pixel sequence
   *  @param toRepParam representation parameter describing the desired
   *    new compressed representation (e.g. JPEG quality)
   *  @param toPixSeq compressed pixel sequence (pointer to new DcmPixelSequence object
   *    allocated on heap) returned in this parameter upon success.
   *  @param cp codec parameters for this codec
   *  @param objStack stack pointing to the location of the pixel data
   *    element in the current dataset.
   *  @return EC_Normal if successful, an error code otherwise.
   */
  virtual OFCondition encode(
    const E_TransferSyntax fromRepType,
    const DcmRepresentationParameter * fromRepParam,
    DcmPixelSequence * fromPixSeq,
    const DcmRepresentationParameter * toRepParam,
    DcmPixelSequence * & toPixSeq,
    const DcmCodecParameter * cp,
    DcmStack & objStack) const;

  /** checks if this codec is able to convert from the
   *  given current transfer syntax to the given new
   *  transfer syntax
   *  @param oldRepType current transfer syntax
   *  @param newRepType desired new transfer syntax
   *  @return true if transformation is supported by this codec, false otherwise.
   */
  virtual OFBool canChangeCoding(
    const E_TransferSyntax oldRepType,
    const E_TransferSyntax newRepType) const;

  /** determine color model of the decompressed image
   *  @param fromParam representation parameter of current compressed
   *    representation, may be NULL
   *  @param fromPixSeq compressed pixel sequence
   *  @param cp codec parameters for this codec
   *  @param dataset pointer to dataset in which pixel data element is contained
   *  @param dataset pointer to DICOM dataset in which this pixel data object
   *    is located. Used to access photometric interpretation.
   *  @param decompressedColorModel upon successful return, the color model
   *    of the decompressed image (which may be different from the one used
   *    in the compressed images) is returned in this parameter
   *  @return EC_Normal if successful, an error code otherwise
   */
  virtual OFCondition determineDecompressedColorModel(
    const DcmRepresentationParameter *fromParam,
    DcmPixelSequence *fromPixSeq,
    const DcmCodecParameter *cp,
    DcmItem *dataset,
    OFString &decompressedColorModel) const;

private:

  /** returns the transfer syntax that this particular codec
   *  is able to encode
   *  @return supported transfer syntax
   */
  virtual E_TransferSyntax supportedTransferSyntax() const = 0;

  /** lossless encoder that compresses the complete pixel cell
   *  (very much like the RLE encoder in module dcmdata).
   *  @param pixelData pointer to the uncompressed image data in OW format
   *    and local byte order
   *  @param length of the pixel data field in bytes
   *  @param dataset pointer to dataset containing image pixel module
   *  @param djrp representation parameter
   *  @param pixSeq pixel sequence to write to
   *  @param djcp codec parameter
   *  @param compressionRatio compression ratio returned upon success
   *  @return EC_Normal if successful, an error code otherwise.
   */
  OFCondition losslessRawEncode(
    const Uint16 *pixelData,
    const Uint32 length,
    DcmItem *dataset,
    const DJLSRepresentationParameter *djrp,
    DcmPixelSequence * & pixSeq,
    const DJLSCodecParameter *djcp,
    double& compressionRatio) const;

  /** lossless encoder that moves Overlays to (60xx,3000) and only
   *  compresses the stored bits of the pixel cell.
   *  @param pixelData pointer to the uncompressed image data in OW format
   *    and local byte order
   *  @param length of the pixel data field in bytes
   *  @param dataset pointer to dataset containing image pixel module
   *  @param djrp representation parameter
   *  @param pixSeq pixel sequence to write to
   *  @param djcp codec parameter
   *  @param compressionRatio compression ratio returned upon success
   *  @param nearLosslessDeviation maximum deviation for near-lossless encoding
   *  @return EC_Normal if successful, an error code otherwise.
   */
  OFCondition losslessCookedEncode(
    const Uint16 * pixelData,
    const Uint32 length,
    DcmItem *dataset,
    const DJLSRepresentationParameter *djrp,
    DcmPixelSequence * & pixSeq,
    const DJLSCodecParameter *djcp,
    double& compressionRatio,
    Uint16 nearLosslessDeviation) const;

  /** for all overlay groups create (60xx,3000) Overlay Data.
   *  @param dataset dataset to be modified
   *  @param image DicomImage object for this dataset
   *  @return EC_Normal if successful, an error code otherwise
   */
  OFCondition adjustOverlays(
    DcmItem *dataset,
    DicomImage& image) const;

  /** create Lossy Image Compression and Lossy Image Compression Ratio.
   *  @param dataset dataset to be modified
   *  @param ratio image compression ratio > 1. This is the real effective ratio
   *    between compressed and uncompressed image,
   *    i. e. 30 means a 30:1 lossy compression.
   *  @return EC_Normal if successful, an error code otherwise
   */
  OFCondition updateLossyCompressionRatio(
    DcmItem *dataset,
    double ratio) const;

  /** create Derivation Description.
   *  @param dataset dataset to be modified
   *  @param djrp representation parameter passed to encode()
   *  @param ratio image compression ratio > 1. This is the real effective ratio
   *    between compressed and uncompressed image,
   *    i. e. 30 means a 30:1 lossy compression.
   *  @return EC_Normal if successful, an error code otherwise
   */
  OFCondition updateDerivationDescription(
    DcmItem *dataset,
    const DJLSRepresentationParameter *djrp,
    double ratio) const;

  /** perform the lossless raw compression of a single frame
   *  @param framePointer pointer to start of frame
   *  @param bitsAllocated number of bits allocated per pixel
   *  @param columns frame width
   *  @param rows frame height
   *  @param samplesPerPixel image samples per pixel
   *  @param planarConfiguration image planar configuration
   *  @param photometricInterpretation photometric interpretation of the DICOM dataset
   *  @param pixelSequence object in which the compressed frame is stored
   *  @param offsetList list of frame offsets updated in this parameter
   *  @param compressedSize size of compressed frame returned in this parameter
   *  @param djcp parameters for the codec
   *  @return EC_Normal if successful, an error code otherwise
   */
  OFCondition compressRawFrame(
    const Uint8 *framePointer,
    Uint16 bitsAllocated,
    Uint16 columns,
    Uint16 rows,
    Uint16 samplesPerPixel,
    Uint16 planarConfiguration,
    const OFString& photometricInterpretation,
    DcmPixelSequence *pixelSequence,
    DcmOffsetList &offsetList,
    unsigned long &compressedSize,
    const DJLSCodecParameter *djcp) const;

  /** perform the lossless cooked compression of a single frame
   *  @param pixelSequence object in which the compressed frame is stored
   *  @param dimage DicomImage instance used to process frame
   *  @param photometricInterpretation photometric interpretation of the DICOM dataset
   *  @param offsetList list of frame offsets updated in this parameter
   *  @param compressedSize size of compressed frame returned in this parameter
   *  @param djcp parameters for the codec
   *  @param frame frame index
   *  @param nearLosslessDeviation maximum deviation for near-lossless encoding
   *  @return EC_Normal if successful, an error code otherwise
   */
  OFCondition compressCookedFrame(
    DcmPixelSequence *pixelSequence,
    DicomImage *dimage,
    const OFString& photometricInterpretation,
    DcmOffsetList &offsetList,
    unsigned long &compressedSize,
    const DJLSCodecParameter *djcp,
    Uint32 frame,
    Uint16 nearLosslessDeviation) const;

  /** Convert an image from sample interleaved to uninterleaved.
   *  @param target A buffer where the converted image will be stored
   *  @param source The image buffer to be converted
   *  @param components Color components used in the image
   *  @param width The width of the image
   *  @param height The height of the image
   *  @param bitsAllocated The number of bits allocated in the image.
   *  @return EC_Normal if succesful, an error code otherwise
   */
  OFCondition convertToUninterleaved(
    Uint8 *target,
    const Uint8 *source,
    Uint16 components,
    Uint32 width,
    Uint32 height,
    Uint16 bitsAllocated) const;

  /** Convert an image from uninterleaved to sample interleaved.
   *  @param target A buffer where the converted image will be stored
   *  @param source The image buffer to be converted
   *  @param components Color components used in the image
   *  @param width The width of the image.
   *  @param height The height of the image.
   *  @param bitsAllocated The number of bits allocated in the image.
   *  @return EC_Normal if succesful, an error code otherwise
   */
  OFCondition convertToSampleInterleaved(
    Uint8 *target,
    const Uint8 *source,
    Uint16 components,
    Uint32 width,
    Uint32 height,
    Uint16 bitsAllocated) const;
};


/** codec class for JPEG-LS lossless only TS encoding
 */
class DJLSLosslessEncoder : public DJLSEncoderBase
{
  /** returns the transfer syntax that this particular codec
   *  is able to encode
   *  @return supported transfer syntax
   */
  virtual E_TransferSyntax supportedTransferSyntax() const;
};

/** codec class for JPEG-LS lossy and lossless TS encoding
 */
class DJLSNearLosslessEncoder : public DJLSEncoderBase
{
  /** returns the transfer syntax that this particular codec
   *  is able to encode
   *  @return supported transfer syntax
   */
  virtual E_TransferSyntax supportedTransferSyntax() const;
};

#endif

/*
 * CVS/RCS Log:
 * $Log: djcodece.h,v $
 * Revision 1.8  2010-10-14 13:17:19  joergr
 * Updated copyright header. Added reference to COPYRIGHT file.
 *
 * Revision 1.7  2010-03-01 10:35:28  uli
 * Renamed include guards to avoid name clash with e.g. dcmjpeg.
 *
 * Revision 1.6  2010-02-26 10:54:41  uli
 * Fixed a compiler warning with MSVC about unsafe casts.
 *
 * Revision 1.5  2010-02-25 10:17:14  uli
 * Fix doxygen comments in a couple of places.
 *
 * Revision 1.4  2009-11-17 16:57:14  joergr
 * Added new method that allows for determining the color model of the
 * decompressed image.
 *
 * Revision 1.3  2009-10-07 13:16:47  uli
 * Switched to logging mechanism provided by the "new" oflog module.
 *
 * Revision 1.2  2009-07-31 09:14:52  meichel
 * Added codec parameter and command line options that allow to control
 *   the interleave mode used in the JPEG-LS bitstream when compressing
 *   color images.
 *
 * Revision 1.1  2009-07-29 14:46:46  meichel
 * Initial release of module dcmjpls, a JPEG-LS codec for DCMTK based on CharLS
 *
 * Revision 1.3  2008-05-29 10:54:05  meichel
 * Implemented new method DcmPixelData::getUncompressedFrame
 *   that permits frame-wise access to compressed and uncompressed
 *   objects without ever loading the complete object into main memory.
 *   For this new method to work with compressed images, all classes derived from
 *   DcmCodec need to implement a new method decodeFrame(). For now, only
 *   dummy implementations returning an error code have been defined.
 *
 * Revision 1.2  2007/06/20 12:37:37  meichel
 * Completed implementation of encoder, which now supports lossless
 *   "raw" and "cooked" and near-lossless "cooked" modes.
 *
 * Revision 1.1  2007/06/15 14:35:45  meichel
 * Renamed CMake project and include directory from dcmjpgls to dcmjpls
 *
 * Revision 1.4  2007/06/15 10:38:43  meichel
 * Further code clean-up. Encoder now produces valid offset tables if
 *   a JPEG-LS frame size an odd number of bytes.
 *
 * Revision 1.3  2007/06/14 12:36:14  meichel
 * Further code clean-up. Updated doxygen comments.
 *
 * Revision 1.2  2007/06/13 16:41:07  meichel
 * Code clean-up and removal of dead code
 *
 *
 */