libbpp-phyl-dev 2.0.3-1 in ubuntu - precise / universe

About

This package is 4.5 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/libb/libbpp-phyl/libbpp-phyl-dev_2.0.3-1_amd64.deb .

View its full control file here: debian/control.

Description

Bio++ Phylogenetic library development files.

Relations

This package depends on: libbpp-phyl9 (= 2.0.3-1), libbpp-seq-dev (>= 2.0.3).

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

libbpp-phyl-dev 2.0.3-1 is in ubuntu - precise / universe. This package's architecture is: amd64.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/include/ root:root 0o755
/usr/include/Bpp/ root:root 0o755
/usr/include/Bpp/Phyl/ root:root 0o755
/usr/include/Bpp/Phyl/AncestralStateReconstruction.h text/x-c root:root 0o644 3.6 KB
/usr/include/Bpp/Phyl/App/ root:root 0o755
/usr/include/Bpp/Phyl/App.all text/x-c root:root 0o644 47 bytes
/usr/include/Bpp/Phyl/App/PhylogeneticsApplicationTools.h text/x-c root:root 0o644 38.0 KB
/usr/include/Bpp/Phyl/BipartitionList.h text/x-c root:root 0o644 8.1 KB
/usr/include/Bpp/Phyl/BipartitionTools.h text/x-c root:root 0o644 5.9 KB
/usr/include/Bpp/Phyl/Distance/ root:root 0o755
/usr/include/Bpp/Phyl/Distance/AbstractAgglomerativeDistanceMethod.h text/x-c root:root 0o644 7.4 KB
/usr/include/Bpp/Phyl/Distance/AgglomerativeDistanceMethod.h text/x-c++ root:root 0o644 2.5 KB
/usr/include/Bpp/Phyl/Distance.all text/x-c root:root 0o644 287 bytes
/usr/include/Bpp/Phyl/Distance/BioNJ.h text/x-c++ root:root 0o644 2.9 KB
/usr/include/Bpp/Phyl/Distance/DistanceEstimation.h text/x-c root:root 0o644 16.8 KB
/usr/include/Bpp/Phyl/Distance/HierarchicalClustering.h text/x-c root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Distance/NeighborJoining.h text/x-c root:root 0o644 3.2 KB
/usr/include/Bpp/Phyl/Distance/PGMA.h text/x-c root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Graphics/ root:root 0o755
/usr/include/Bpp/Phyl/Graphics/AbstractDendrogramPlot.h text/x-c root:root 0o644 3.2 KB
/usr/include/Bpp/Phyl/Graphics/AbstractTreeDrawing.h text/x-c root:root 0o644 12.4 KB
/usr/include/Bpp/Phyl/Graphics.all text/x-c root:root 0o644 285 bytes
/usr/include/Bpp/Phyl/Graphics/CladogramPlot.h text/x-c root:root 0o644 3.3 KB
/usr/include/Bpp/Phyl/Graphics/PhylogramPlot.h text/x-c root:root 0o644 3.3 KB
/usr/include/Bpp/Phyl/Graphics/TreeDrawingDisplayControler.h text/x-c root:root 0o644 6.7 KB
/usr/include/Bpp/Phyl/Graphics/TreeDrawing.h text/x-c++ root:root 0o644 11.6 KB
/usr/include/Bpp/Phyl/Graphics/TreeDrawingListener.h text/x-c++ root:root 0o644 8.7 KB
/usr/include/Bpp/Phyl/Io/ root:root 0o755
/usr/include/Bpp/Phyl/Io.all text/x-c root:root 0o644 280 bytes
/usr/include/Bpp/Phyl/Io/IoDistanceMatrixFactory.h text/x-c++ root:root 0o644 3.2 KB
/usr/include/Bpp/Phyl/Io/IoDistanceMatrix.h text/x-c root:root 0o644 4.9 KB
/usr/include/Bpp/Phyl/Io/IoPairedSiteLikelihoods.h text/x-c++ root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Io/IoTreeFactory.h text/x-c++ root:root 0o644 3.0 KB
/usr/include/Bpp/Phyl/Io/IoTree.h text/x-c root:root 0o644 7.2 KB
/usr/include/Bpp/Phyl/Io/Newick.h text/x-c root:root 0o644 5.9 KB
/usr/include/Bpp/Phyl/Io/NexusIoTree.h text/x-c root:root 0o644 4.5 KB
/usr/include/Bpp/Phyl/Io/Nhx.h text/x-c root:root 0o644 8.4 KB
/usr/include/Bpp/Phyl/Io/PhylipDistanceMatrixFormat.h text/x-c root:root 0o644 3.0 KB
/usr/include/Bpp/Phyl/Likelihood/ root:root 0o755
/usr/include/Bpp/Phyl/Likelihood/AbstractDiscreteRatesAcrossSitesTreeLikelihood.h text/x-c root:root 0o644 5.0 KB
/usr/include/Bpp/Phyl/Likelihood/AbstractHomogeneousTreeLikelihood.h text/x-c root:root 0o644 8.4 KB
/usr/include/Bpp/Phyl/Likelihood/AbstractNonHomogeneousTreeLikelihood.h text/x-c root:root 0o644 9.6 KB
/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihoodData.h text/x-c root:root 0o644 4.8 KB
/usr/include/Bpp/Phyl/Likelihood/AbstractTreeLikelihood.h text/x-c root:root 0o644 10.1 KB
/usr/include/Bpp/Phyl/Likelihood.all text/x-c root:root 0o644 1.6 KB
/usr/include/Bpp/Phyl/Likelihood/ClockTreeLikelihood.h text/x-c root:root 0o644 2.8 KB
/usr/include/Bpp/Phyl/Likelihood/DiscreteRatesAcrossSitesTreeLikelihood.h text/x-c root:root 0o644 7.4 KB
/usr/include/Bpp/Phyl/Likelihood/DRASDRTreeLikelihoodData.h text/x-c root:root 0o644 14.4 KB
/usr/include/Bpp/Phyl/Likelihood/DRASRTreeLikelihoodData.h text/x-c root:root 0o644 10.8 KB
/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousMixedTreeLikelihood.h text/x-c++ root:root 0o644 7.6 KB
/usr/include/Bpp/Phyl/Likelihood/DRHomogeneousTreeLikelihood.h text/x-c root:root 0o644 12.1 KB
/usr/include/Bpp/Phyl/Likelihood/DRNonHomogeneousTreeLikelihood.h text/x-c root:root 0o644 12.5 KB
/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihood.h text/x-c root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Likelihood/DRTreeLikelihoodTools.h text/x-c root:root 0o644 3.2 KB
/usr/include/Bpp/Phyl/Likelihood/GlobalClockTreeLikelihoodFunctionWrapper.h text/x-c root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Likelihood/HomogeneousTreeLikelihood.h text/x-c root:root 0o644 3.4 KB
/usr/include/Bpp/Phyl/Likelihood/MarginalAncestralStateReconstruction.h text/x-c root:root 0o644 7.1 KB
/usr/include/Bpp/Phyl/Likelihood/NNIHomogeneousTreeLikelihood.h text/x-c++ root:root 0o644 8.5 KB
/usr/include/Bpp/Phyl/Likelihood/NonHomogeneousTreeLikelihood.h text/x-c root:root 0o644 4.5 KB
/usr/include/Bpp/Phyl/Likelihood/PairedSiteLikelihoods.h text/x-c++ root:root 0o644 6.1 KB
/usr/include/Bpp/Phyl/Likelihood/PseudoNewtonOptimizer.h text/x-c root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Likelihood/RASTools.h text/x-c root:root 0o644 2.5 KB
/usr/include/Bpp/Phyl/Likelihood/RHomogeneousClockTreeLikelihood.h text/x-c root:root 0o644 6.3 KB
/usr/include/Bpp/Phyl/Likelihood/RHomogeneousMixedTreeLikelihood.h text/x-c++ root:root 0o644 7.3 KB
/usr/include/Bpp/Phyl/Likelihood/RHomogeneousTreeLikelihood.h text/x-c root:root 0o644 11.0 KB
/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousMixedTreeLikelihood.h text/x-c++ root:root 0o644 10.0 KB
/usr/include/Bpp/Phyl/Likelihood/RNonHomogeneousTreeLikelihood.h text/x-c root:root 0o644 11.4 KB
/usr/include/Bpp/Phyl/Likelihood/SitePartitionTreeLikelihood.h text/x-c root:root 0o644 3.3 KB
/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodData.h text/x-c root:root 0o644 4.3 KB
/usr/include/Bpp/Phyl/Likelihood/TreeLikelihood.h text/x-c root:root 0o644 13.5 KB
/usr/include/Bpp/Phyl/Likelihood/TreeLikelihoodTools.h text/x-c root:root 0o644 4.5 KB
/usr/include/Bpp/Phyl/Mapping/ root:root 0o755
/usr/include/Bpp/Phyl/Mapping.all text/x-c root:root 0o644 501 bytes
/usr/include/Bpp/Phyl/Mapping/AnalyticalSubstitutionCount.h text/x-c root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Mapping/DecompositionSubstitutionCount.h text/x-c root:root 0o644 4.5 KB
/usr/include/Bpp/Phyl/Mapping/IndexToCount.h text/x-c root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Mapping/OneJumpSubstitutionCount.h text/x-c root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Mapping/ProbabilisticSubstitutionMapping.h text/x-c root:root 0o644 6.5 KB
/usr/include/Bpp/Phyl/Mapping/SimpleSubstitutionCount.h text/x-c root:root 0o644 5.1 KB
/usr/include/Bpp/Phyl/Mapping/SubstitutionCount.h text/x-c root:root 0o644 6.1 KB
/usr/include/Bpp/Phyl/Mapping/SubstitutionMapping.h text/x-c root:root 0o644 8.0 KB
/usr/include/Bpp/Phyl/Mapping/SubstitutionMappingTools.h text/x-c root:root 0o644 10.2 KB
/usr/include/Bpp/Phyl/Mapping/SubstitutionRegister.h text/x-c root:root 0o644 14.7 KB
/usr/include/Bpp/Phyl/Mapping/UniformizationSubstitutionCount.h text/x-c root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Model/ root:root 0o755
/usr/include/Bpp/Phyl/Model/AbstractBiblioMixedSubstitutionModel.h text/x-c++ root:root 0o644 4.6 KB
/usr/include/Bpp/Phyl/Model/AbstractBiblioSubstitutionModel.h text/x-c++ root:root 0o644 6.3 KB
/usr/include/Bpp/Phyl/Model/AbstractCodonDistanceSubstitutionModel.h text/x-c++ root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Model/AbstractCodonFrequenciesSubstitutionModel.h text/x-c root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Model/AbstractCodonPhaseFrequenciesSubstitutionModel.h text/x-c root:root 0o644 4.4 KB
/usr/include/Bpp/Phyl/Model/AbstractCodonSubstitutionModel.h text/x-c++ root:root 0o644 5.8 KB
/usr/include/Bpp/Phyl/Model/AbstractMixedSubstitutionModel.h text/x-c root:root 0o644 6.4 KB
/usr/include/Bpp/Phyl/Model/AbstractSubstitutionModel.h text/x-c++ root:root 0o644 13.3 KB
/usr/include/Bpp/Phyl/Model/AbstractWordSubstitutionModel.h text/x-c++ root:root 0o644 5.6 KB
/usr/include/Bpp/Phyl/Model.all text/x-c root:root 0o644 2.3 KB
/usr/include/Bpp/Phyl/Model/BinarySubstitutionModel.h text/x-c++ root:root 0o644 4.9 KB
/usr/include/Bpp/Phyl/Model/CodonDistanceFrequenciesSubstitutionModel.h text/x-c++ root:root 0o644 6.6 KB
/usr/include/Bpp/Phyl/Model/CodonDistancePhaseFrequenciesSubstitutionModel.h text/x-c++ root:root 0o644 6.7 KB
/usr/include/Bpp/Phyl/Model/CodonDistanceSubstitutionModel.h text/x-c root:root 0o644 5.5 KB
/usr/include/Bpp/Phyl/Model/CodonRateFrequenciesSubstitutionModel.h text/x-c++ root:root 0o644 4.6 KB
/usr/include/Bpp/Phyl/Model/CodonRateSubstitutionModel.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/CodonSubstitutionModel.h text/x-c root:root 0o644 2.6 KB
/usr/include/Bpp/Phyl/Model/DSO78.h text/x-c root:root 0o644 4.9 KB
/usr/include/Bpp/Phyl/Model/F84.h text/x-c root:root 0o644 9.2 KB
/usr/include/Bpp/Phyl/Model/FrequenciesSet.h text/x-c++ root:root 0o644 26.7 KB
/usr/include/Bpp/Phyl/Model/G2001.h text/x-c root:root 0o644 5.7 KB
/usr/include/Bpp/Phyl/Model/GTR.h text/x-c root:root 0o644 5.9 KB
/usr/include/Bpp/Phyl/Model/GY94.h text/x-c++ root:root 0o644 3.8 KB
/usr/include/Bpp/Phyl/Model/HKY85.h text/x-c root:root 0o644 9.0 KB
/usr/include/Bpp/Phyl/Model/JCnuc.h text/x-c++ root:root 0o644 5.8 KB
/usr/include/Bpp/Phyl/Model/JCprot.h text/x-c root:root 0o644 8.0 KB
/usr/include/Bpp/Phyl/Model/JTT92.h text/x-c root:root 0o644 4.9 KB
/usr/include/Bpp/Phyl/Model/K80.h text/x-c root:root 0o644 7.9 KB
/usr/include/Bpp/Phyl/Model/L95.h text/x-c++ root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Model/LG08.h text/x-c root:root 0o644 4.8 KB
/usr/include/Bpp/Phyl/Model/LLG08_EHO.h text/x-c++ root:root 0o644 4.1 KB
/usr/include/Bpp/Phyl/Model/LLG08_EX2.h text/x-c++ root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Model/LLG08_EX3.h text/x-c++ root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Model/LLG08_UL2.h text/x-c++ root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Model/LLG08_UL3.h text/x-c++ root:root 0o644 4.1 KB
/usr/include/Bpp/Phyl/Model/MarkovModulatedSubstitutionModel.h text/x-c root:root 0o644 10.3 KB
/usr/include/Bpp/Phyl/Model/MG94.h text/x-c++ root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Model/MixedSubstitutionModel.h text/x-c root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Model/MixedSubstitutionModelSet.h text/x-c root:root 0o644 11.3 KB
/usr/include/Bpp/Phyl/Model/MixtureOfASubstitutionModel.h text/x-c++ root:root 0o644 5.2 KB
/usr/include/Bpp/Phyl/Model/MixtureOfSubstitutionModels.h text/x-c root:root 0o644 6.7 KB
/usr/include/Bpp/Phyl/Model/NucleotideSubstitutionModel.h text/x-c root:root 0o644 2.3 KB
/usr/include/Bpp/Phyl/Model/ProteinSubstitutionModel.h text/x-c root:root 0o644 2.3 KB
/usr/include/Bpp/Phyl/Model/RateDistributionFactory.h text/x-c++ root:root 0o644 4.0 KB
/usr/include/Bpp/Phyl/Model/RE08.h text/x-c root:root 0o644 7.7 KB
/usr/include/Bpp/Phyl/Model/RN95.h text/x-c root:root 0o644 5.8 KB
/usr/include/Bpp/Phyl/Model/RN95s.h text/x-c root:root 0o644 4.7 KB
/usr/include/Bpp/Phyl/Model/SSR.h text/x-c++ root:root 0o644 4.3 KB
/usr/include/Bpp/Phyl/Model/SubstitutionModelFactory.h text/x-c root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Model/SubstitutionModel.h text/x-c++ root:root 0o644 13.0 KB
/usr/include/Bpp/Phyl/Model/SubstitutionModelSet.h text/x-c++ root:root 0o644 21.9 KB
/usr/include/Bpp/Phyl/Model/SubstitutionModelSetTools.h text/x-c root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Model/T92.h text/x-c++ root:root 0o644 7.7 KB
/usr/include/Bpp/Phyl/Model/TN93.h text/x-c root:root 0o644 6.2 KB
/usr/include/Bpp/Phyl/Model/TripletSubstitutionModel.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/TS98.h text/x-c root:root 0o644 4.2 KB
/usr/include/Bpp/Phyl/Model/UserProteinSubstitutionModel.h text/x-c root:root 0o644 5.4 KB
/usr/include/Bpp/Phyl/Model/WAG01.h text/x-c root:root 0o644 5.0 KB
/usr/include/Bpp/Phyl/Model/WordSubstitutionModel.h text/x-c++ root:root 0o644 4.4 KB
/usr/include/Bpp/Phyl/Model/YN98.h text/x-c++ root:root 0o644 4.1 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M1.h text/x-c++ root:root 0o644 3.9 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M2.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M3.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M7.h text/x-c++ root:root 0o644 3.5 KB
/usr/include/Bpp/Phyl/Model/YNGKP_M8.h text/x-c++ root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Model/YpR.h text/x-c++ root:root 0o644 7.0 KB
/usr/include/Bpp/Phyl/NNISearchable.h text/x-c root:root 0o644 4.4 KB
/usr/include/Bpp/Phyl/NNITopologySearch.h text/x-c root:root 0o644 5.5 KB
/usr/include/Bpp/Phyl/Node.h text/x-c++ root:root 0o644 18.9 KB
/usr/include/Bpp/Phyl/NodeTemplate.h text/x-c root:root 0o644 6.3 KB
/usr/include/Bpp/Phyl/OptimizationTools.h text/x-c++ root:root 0o644 32.7 KB
/usr/include/Bpp/Phyl/Parsimony/ root:root 0o755
/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyData.h text/x-c root:root 0o644 3.8 KB
/usr/include/Bpp/Phyl/Parsimony/AbstractTreeParsimonyScore.h text/x-c root:root 0o644 3.3 KB
/usr/include/Bpp/Phyl/Parsimony.all text/x-c root:root 0o644 269 bytes
/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyData.h text/x-c root:root 0o644 9.4 KB
/usr/include/Bpp/Phyl/Parsimony/DRTreeParsimonyScore.h text/x-c root:root 0o644 6.0 KB
/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyData.h text/x-c root:root 0o644 3.4 KB
/usr/include/Bpp/Phyl/Parsimony/TreeParsimonyScore.h text/x-c root:root 0o644 3.2 KB
/usr/include/Bpp/Phyl/PatternTools.h text/x-c root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/PhyloStatistics.h text/x-c root:root 0o644 3.7 KB
/usr/include/Bpp/Phyl/Simulation/ root:root 0o755
/usr/include/Bpp/Phyl/Simulation.all text/x-c root:root 0o644 323 bytes
/usr/include/Bpp/Phyl/Simulation/DetailedSiteSimulator.h text/x-c root:root 0o644 7.8 KB
/usr/include/Bpp/Phyl/Simulation/HomogeneousSequenceSimulator.h text/x-c root:root 0o644 2.5 KB
/usr/include/Bpp/Phyl/Simulation/MutationProcess.h text/x-c root:root 0o644 12.1 KB
/usr/include/Bpp/Phyl/Simulation/NonHomogeneousSequenceSimulator.h text/x-c root:root 0o644 9.9 KB
/usr/include/Bpp/Phyl/Simulation/SequenceSimulationTools.h text/x-c root:root 0o644 3.6 KB
/usr/include/Bpp/Phyl/Simulation/SequenceSimulator.h text/x-c root:root 0o644 2.3 KB
/usr/include/Bpp/Phyl/Simulation/SiteSimulator.h text/x-c root:root 0o644 2.4 KB
/usr/include/Bpp/Phyl/SitePatterns.h text/x-c root:root 0o644 5.4 KB
/usr/include/Bpp/Phyl/TopologySearch.h text/x-c root:root 0o644 4.1 KB
/usr/include/Bpp/Phyl/TreeExceptions.h text/x-c++ root:root 0o644 7.5 KB
/usr/include/Bpp/Phyl/Tree.h text/x-c root:root 0o644 15.0 KB
/usr/include/Bpp/Phyl/TreeTemplate.h text/x-c++ root:root 0o644 20.2 KB
/usr/include/Bpp/Phyl/TreeTemplateTools.h text/x-c root:root 0o644 40.2 KB
/usr/include/Bpp/Phyl/TreeTools.h text/x-c root:root 0o644 26.9 KB
/usr/lib/ root:root 0o755
/usr/lib/libbpp-phyl.a application/x-archive root:root 0o644 24.2 MB
/usr/lib/libbpp-phyl.so root:root 0o777
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/libbpp-phyl-dev/ root:root 0o755
/usr/share/doc/libbpp-phyl-dev/changelog.Debian.gz root:root 0o777
/usr/share/doc/libbpp-phyl-dev/copyright text/plain root:root 0o644 2.9 KB

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