/usr/lib/emboss/include/enssequence.h is in emboss-lib 6.3.1-6ubuntu3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 | #ifdef __cplusplus
extern "C"
{
#endif
#ifndef enssequence_h
#define enssequence_h
#include "enscache.h"
#include "ensslice.h"
/* @data EnsPSequenceadaptor **************************************************
**
** Ensembl Sequence Adaptor.
**
** @alias EnsSSequenceadaptor
** @alias EnsOSequenceadaptor
**
** @attr Adaptor [EnsPDatabaseadaptor] Ensembl Database Adaptor.
** @attr Cache [EnsPCache] Ensembl LRU Cache.
** @@
******************************************************************************/
typedef struct EnsSSequenceadaptor
{
EnsPDatabaseadaptor Adaptor;
EnsPCache Cache;
} EnsOSequenceadaptor;
#define EnsPSequenceadaptor EnsOSequenceadaptor*
/*
** Prototype definitions
*/
/* Ensembl Sequence Adaptor */
EnsPSequenceadaptor ensRegistryGetSequenceadaptor(
EnsPDatabaseadaptor dba);
EnsPSequenceadaptor ensSequenceadaptorNew(
EnsPDatabaseadaptor dba);
void ensSequenceadaptorDel(EnsPSequenceadaptor* Psa);
AjBool ensSequenceadaptorFetchSubStrBySeqregion(const EnsPSequenceadaptor sa,
EnsPSeqregion sr,
ajuint start,
ajuint length,
AjPStr *Psequence);
AjBool ensSequenceadaptorFetchStrBySeqregion(const EnsPSequenceadaptor sa,
EnsPSeqregion sr,
AjPStr *Psequence);
AjBool ensSequenceadaptorFetchSubSeqBySeqregion(const EnsPSequenceadaptor sa,
EnsPSeqregion sr,
ajuint start,
ajuint length,
AjPSeq *Psequence);
AjBool ensSequenceadaptorFetchSeqBySeqregion(const EnsPSequenceadaptor sa,
EnsPSeqregion sr,
AjPSeq *Psequence);
AjBool ensSequenceadaptorFetchSubStrBySlice(const EnsPSequenceadaptor sa,
EnsPSlice slice,
ajint start,
ajint end,
ajint strand,
AjPStr *Psequence);
AjBool ensSequenceadaptorFetchStrBySlice(const EnsPSequenceadaptor sa,
EnsPSlice slice,
AjPStr *Psequence);
AjBool ensSequenceadaptorFetchSubSeqBySlice(const EnsPSequenceadaptor sa,
EnsPSlice slice,
ajint start,
ajint end,
ajint strand,
AjPSeq *Psequence);
AjBool ensSequenceadaptorFetchSeqBySlice(const EnsPSequenceadaptor sa,
EnsPSlice slice,
AjPSeq *Psequence);
/*
** End of prototype definitions
*/
#endif /* enssequence_h */
#ifdef __cplusplus
}
#endif
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