/usr/lib/emboss/include/embpdb.h is in emboss-lib 6.3.1-6ubuntu3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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**
** @source embpdb.h
**
** Algorithms for handling protein structural data.
** For use with Atom, Chain and Pdb objects defined in ajpdb.h
** Also for use with Hetent, Het, Vdwres, Vdwall, Cmap and Pdbtosp objects
** (also in ajpdb.h)
**
** @author: Copyright (C) 2004 Jon Ison (jison@hgmp.mrc.ac.uk)
** @version 1.0
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Library General Public
** License as published by the Free Software Foundation; either
** version 2 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Library General Public License for more details.
**
** You should have received a copy of the GNU Library General Public
** License along with this library; if not, write to the
** Free Software Foundation, Inc., 59 Temple Place - Suite 330,
** Boston, MA 02111-1307, USA.
****************************************************************************/
#ifdef __cplusplus
extern "C"
{
#endif
#ifndef embpdb_h
#define embpdb_h
/****************************************************************************
**
** @source embpdb.h
**
** @source Algorithms for reading and writing ccf (clean coordinate file)
** format and for handling protein structural data.
** For Atom, Chain and Pdb objects defined in ajpdb.h
** For Hetent, Het, Vdwres, Vdwall, Cmap and Pdbtosp objects (also in ajpdb.h)
**
** @author: Copyright (C) 2004 Jon Ison (jison@hgmp.mrc.ac.uk)
** @version 1.0
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Library General Public
** License as published by the Free Software Foundation; either
** version 2 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Library General Public License for more details.
**
** You should have received a copy of the GNU Library General Public
** License along with this library; if not, write to the
** Free Software Foundation, Inc., 59 Temple Place - Suite 330,
** Boston, MA 02111-1307, USA.
***************************************************************************/
/*
** Prototype definitions
*/
/* ======================================================================= */
/* =========================== Pdb object ================================ */
/* ======================================================================= */
AjBool embAtomInContact(const AjPAtom atm1, const AjPAtom atm2,
float thresh,
const AjPVdwall vdw);
float embAtomDistance(const AjPAtom atm1, const AjPAtom atm2,
const AjPVdwall vdw);
AjBool embPdbResidueIndexI(const AjPPdb pdb, ajint chn, AjPInt *idx);
AjBool embPdbResidueIndexC(const AjPPdb pdb, char chn, AjPInt *idx);
AjBool embPdbResidueIndexICA(const AjPPdb pdb, ajint chn, AjPUint *idx,
ajint *nres);
AjBool embPdbResidueIndexCCA(const AjPPdb pdb, char chn, AjPUint *idx,
ajint *nres);
AjBool embPdbToIdx(ajint *idx, const AjPPdb pdb, const AjPStr res,
ajint chn);
AjBool embPdbListHeterogens(const AjPPdb pdb, AjPList *list_heterogens,
AjPInt *siz_heterogens, ajint *nhet,
AjPFile logfile);
AjBool embPdbidToSp(const AjPStr pdb, AjPStr *spr, const AjPList list);
AjBool embPdbidToAcc(const AjPStr pdb, AjPStr *acc, const AjPList list);
AjBool embPdbidToScop(const AjPPdb pdb, const AjPList list_allscop,
AjPList *list_pdbscopids);
float embVdwRad(const AjPAtom atm, const AjPVdwall vdw);
AjBool embStrideToThree(AjPStr *to, const AjPStr from);
/*
** End of prototype definitions
*/
#endif
#ifdef __cplusplus
}
#endif
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