/usr/lib/emboss/include/embdbi.h is in emboss-lib 6.3.1-6ubuntu3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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extern "C"
{
#endif
#ifndef embdbi_h
#define embdbi_h
/* @data EmbPField ************************************************************
**
** NUCLEUS internal structure for database indexing applications
** to store field tokens with links to the entry index number.
**
** @attr field [char*] field token
** @attr entry [char*] entry name
** @attr nid [ajuint] entry number
** @attr Padding [char[4]] Padding to alignment boundary
** @@
******************************************************************************/
typedef struct EmbSField {
char* field;
char* entry;
ajuint nid;
char Padding[4];
} EmbOField;
#define EmbPField EmbOField*
/* @data EmbPEntry ************************************************************
**
** NUCLEUS internal structure for database indexing applications
** to store an entry id with a list of field tokens and file
** positions for writing to the index files.
**
** @attr entry [char*] entry name
** @attr filenum [ajuint] record in division file
** @attr rpos [ajint] entry offset in data file
** @attr spos [ajint] entry offset in sequence file
** @attr nfields [ajuint] number of fields
** @attr nfield [ajuint*] number of tokens for each field
** @attr field [char***] array of tokens for each field
** @@
******************************************************************************/
typedef struct EmbSEntry {
char* entry;
ajuint filenum;
ajint rpos;
ajint spos;
ajuint nfields;
ajuint* nfield;
char*** field;
} EmbOEntry;
#define EmbPEntry EmbOEntry*
/*
** Prototype definitions
*/
ajint embDbiCmpId (const void* a, const void* b);
ajint embDbiCmpFieldId (const void* a, const void* b);
ajint embDbiCmpFieldField (const void* a, const void* b);
void embDbiDateSet (const AjPStr datestr, char date[4]);
void embDbiEntryDel(EmbPEntry* Pentry);
void embDbiEntryDelMap(void** pthys, void* cl);
EmbPEntry embDbiEntryNew (ajuint nfields);
void embDbiExit(void);
void embDbiFieldDel(EmbPField* pthys);
void embDbiFieldDelMap(void** pthys, void* cl);
EmbPField embDbiFieldNew (void);
AjPFile embDbiFileIn (const AjPStr dbname, const char* extension);
AjPFile embDbiFileIndex (const AjPStr indexdir, const AjPStr field,
const char* extension);
AjPList embDbiFileList (const AjPStr dir, const AjPStr wildfile,
AjBool trim);
AjPList embDbiFileListExc (const AjPStr dir, const AjPStr wildfile,
const AjPStr exclude);
AjPFile embDbiFileOut (const AjPStr dbname, const char* extension);
AjPFile embDbiFileSingle (const AjPStr dbname, const char* extension,
ajuint num);
AjBool embDbiFlatOpenlib(const AjPStr lname, AjPFile* libr);
void embDbiHeader (AjPFile file, ajuint filesize,
ajuint recordcnt, short recordlen,
const AjPStr dbname, const AjPStr release,
const char date[4]);
void embDbiHeaderSize (AjPFile file, ajuint filesize, ajuint recordcnt);
void embDbiLogCmdline(AjPFile logfile);
void embDbiLogFields(AjPFile logfile, AjPStr const * fields,
ajuint nfields);
void embDbiLogFile(AjPFile logfile, const AjPStr curfilename,
ajuint idCountFile, AjPStr const * fields,
const ajuint* countField,
ajuint nfields);
void embDbiLogFinal(AjPFile logfile, ajuint maxlen,
const ajint* maxFieldLen,
AjPStr const * fields, const ajuint* fieldTot,
ajuint nfields, ajuint nfiles,
ajuint idDone, ajuint idCount);
void embDbiLogHeader(AjPFile logfile, const AjPStr dbname,
const AjPStr release, const AjPStr datestr,
const AjPStr indexdir,
ajuint maxindex);
void embDbiLogSource(AjPFile logfile, const AjPStr directory,
const AjPStr filename, const AjPStr exclude,
AjPStr const * inputFiles, ajuint nfiles);
void embDbiMaxlen (AjPStr* token, ajint* maxlen);
void embDbiMemEntry (AjPList idlist,
AjPList* fieldList, ajuint nfields,
EmbPEntry entry, ajuint ifile);
ajuint embDbiMemWriteEntry (AjPFile entFile, ajuint maxidlen,
const AjPList idlist, void ***ids);
ajuint embDbiMemWriteFields (const AjPStr dbname, const AjPStr release,
const char date[4], const AjPStr indexdir,
const AjPStr field, ajuint maxFieldLen,
const AjPList fieldList,
void** ids);
void embDbiRmEntryFile (const AjPStr dbname, AjBool cleanup);
void embDbiRmFile (const AjPStr dbname, const char* ext, ajuint nfiles,
AjBool cleanup);
void embDbiRmFileI (const AjPStr dbname, const char* ext, ajuint ifile,
AjBool cleanup);
void embDbiSortClose (AjPFile* elistfile, AjPFile* alistfile,
ajuint nfields);
void embDbiSortFile (const AjPStr dbname,
const char* ext1, const char* ext2,
ajuint nfiles, AjBool cleanup, const AjPStr sortopt);
AjPFile embDbiSortOpen (AjPFile* alistfile, ajuint ifile,
const AjPStr dbname, AjPStr const * fields,
ajuint nfields);
ajuint embDbiSortWriteEntry (AjPFile entFile, ajuint maxidlen,
const AjPStr dbname, ajuint nfiles,
AjBool cleanup, const AjPStr sortopt);
ajuint embDbiSortWriteFields (const AjPStr dbname, const AjPStr release,
const char date[4], const AjPStr indexdir,
const AjPStr field, ajuint maxFieldLen,
ajuint nfiles, ajuint nentries,
AjBool cleanup, const AjPStr sortopt);
void embDbiWriteDivision (const AjPStr indexdir,
const AjPStr dbname, const AjPStr release,
const char date[4],
ajuint maxfilelen, ajuint nfiles,
AjPStr const * divfiles,
AjPStr const * seqfiles);
void embDbiWriteDivisionRecord (AjPFile file,
ajuint maxnamlen, short recnum,
const AjPStr datfile,
const AjPStr seqfile);
void embDbiWriteEntryRecord (AjPFile file, ajuint maxidlen,
const AjPStr id,
ajint rpos, ajint spos, short filenum);
void embDbiWriteHit (AjPFile file, ajuint idnum);
void embDbiWriteTrg (AjPFile file, ajuint maxfieldlen,
ajuint idnum, ajuint idcnt, const AjPStr hitstr);
/*
** End of prototype definitions
*/
#endif
#ifdef __cplusplus
}
#endif
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