/usr/lib/emboss/include/ajjava.h is in emboss-lib 6.3.1-6ubuntu3.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 | #ifndef ajjava_h
#define ajjava_h
#ifdef HAVE_JAVA
#ifdef __cplusplus
extern "C" {
#endif
#ifdef HAVE_TARGETCONFIG_H
#include <TargetConfig.h>
#endif /* HAVE_TARGETCONFIG_H */
#include "jni.h"
#define JBUFFLEN 10000
#define COMM_AUTH 1
#define EMBOSS_FORK 2
#define MAKE_DIRECTORY 3
#define DELETE_FILE 4
#define DELETE_DIR 5
#define LIST_FILES 6
#define LIST_DIRS 7
#define GET_FILE 8
#define PUT_FILE 9
#define BATCH_FORK 10
#define RENAME_FILE 11
#define SEQ_ATTRIB 12
#define SEQSET_ATTRIB 13
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_seqType
(JNIEnv *, jobject, jstring);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_seqsetType
(JNIEnv *env, jobject obj, jstring usa);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_userInfo
(JNIEnv *env, jobject obj, jstring door, jstring key);
JNIEXPORT jint JNICALL Java_org_emboss_jemboss_parser_Ajax_setuid
(JNIEnv *env, jclass j, jint uid);
JNIEXPORT jint JNICALL Java_org_emboss_jemboss_parser_Ajax_seteuid
(JNIEnv *env, jclass j, jint uid);
JNIEXPORT jint JNICALL Java_org_emboss_jemboss_parser_Ajax_setgid
(JNIEnv *env, jclass j, jint gid);
JNIEXPORT jint JNICALL Java_org_emboss_jemboss_parser_Ajax_setegid
(JNIEnv *env, jclass j, jint gid);
JNIEXPORT jint JNICALL Java_org_emboss_jemboss_parser_Ajax_getuid
(JNIEnv *env, jclass j);
JNIEXPORT jint JNICALL Java_org_emboss_jemboss_parser_Ajax_geteuid
(JNIEnv *env, jclass j);
JNIEXPORT jint JNICALL Java_org_emboss_jemboss_parser_Ajax_getgid
(JNIEnv *env, jclass j);
JNIEXPORT jint JNICALL Java_org_emboss_jemboss_parser_Ajax_getegid
(JNIEnv *env, jclass j);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_fork
(JNIEnv *env, jobject obj, jstring commandline,
jstring environment, jstring directory, jint uid, jint gid);
/* Jembossctl functions */
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_userAuth
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_forkBatch
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring cline, jstring direct);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_forkEmboss
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring cline, jstring direct);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_makeDir
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring direct);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_delFile
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring filename);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_renameFile
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring filename, jstring filename2);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_delDir
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring direct);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_listFiles
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring direct);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_listDirs
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring direct);
JNIEXPORT jbyteArray JNICALL Java_org_emboss_jemboss_parser_Ajax_getFile
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring filename);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_putFile
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring filename, jbyteArray arr);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_seqAttrib
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring filename);
JNIEXPORT jboolean JNICALL Java_org_emboss_jemboss_parser_Ajax_seqsetAttrib
(JNIEnv *env, jobject obj, jstring door, jbyteArray key,
jstring environment, jstring filename);
#ifdef __cplusplus
}
#endif
#endif
#endif
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