This file is indexed.

/usr/lib/emboss/include/ajfileio.h is in emboss-lib 6.3.1-6ubuntu3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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#ifdef __cplusplus
extern "C"
{
#endif

#ifndef ajfileio_h
#define ajfileio_h

#include "ajfile.h"
#include <sys/stat.h>

/*
** Prototype definitions
*/

size_t         ajReadbinBinary(AjPFile thys, size_t count,
                                size_t element_size, void* ptr);
size_t         ajReadbinChar(AjPFile file, size_t len, char* buffer);
size_t         ajReadbinCharTrim(AjPFile file, size_t len, char* buffer);
size_t         ajReadbinInt(AjPFile thys, ajint *val);
size_t         ajReadbinIntEndian(AjPFile thys, ajint *val);
size_t         ajReadbinIntLocal(AjPFile thys, ajint *val);
size_t         ajReadbinInt2(AjPFile thys, ajshort *val);
size_t         ajReadbinInt2Endian(AjPFile thys, ajshort *val);
size_t         ajReadbinInt2Local(AjPFile thys, ajshort *val);
size_t         ajReadbinInt4(AjPFile thys, ajint *val);
size_t         ajReadbinInt4Endian(AjPFile thys, ajint *val);
size_t         ajReadbinInt4Local(AjPFile thys, ajint *val);
size_t         ajReadbinInt8(AjPFile thys, ajlong *val);
size_t         ajReadbinInt8Endian(AjPFile thys, ajlong *val);
size_t         ajReadbinInt8Local(AjPFile thys, ajlong *val);
size_t         ajReadbinUint(AjPFile thys, ajuint *val);
size_t         ajReadbinUint2(AjPFile thys, ajushort *val);
size_t         ajReadbinUint4(AjPFile thys, ajuint *val);
size_t         ajReadbinUint8(AjPFile thys, ajulong *val);
size_t         ajReadbinUintEndian(AjPFile thys, ajuint *val);
size_t         ajReadbinUint2Endian(AjPFile thys, ajushort *val);
size_t         ajReadbinUint4Endian(AjPFile thys, ajuint *val);
size_t         ajReadbinUint8Endian(AjPFile thys, ajulong *val);
size_t         ajReadbinUintLocal(AjPFile thys, ajuint *val);
size_t         ajReadbinUint2Local(AjPFile thys, ajushort *val);
size_t         ajReadbinUint4Local(AjPFile thys, ajuint *val);
size_t         ajReadbinUint8Local(AjPFile thys, ajulong *val);

size_t         ajWritebinBinary(AjPFile file, size_t count,
                             size_t size, const void* buffer);
size_t         ajWritebinByte(AjPFile thys, char ch);
size_t         ajWritebinChar(AjPFile thys, const char* txt, size_t len);
size_t         ajWritebinInt2(AjPFile thys, ajshort i);
size_t         ajWritebinInt4(AjPFile thys, ajint i);
size_t         ajWritebinInt8(AjPFile thys, ajlong i);
size_t         ajWritebinNewline(AjPFile thys);
size_t         ajWritebinStr(AjPFile thys, const AjPStr str, size_t len);
AjBool         ajWriteline(AjPFile file, const AjPStr line);
AjBool         ajWritelineNewline(AjPFile file, const AjPStr line);
AjBool         ajWritelineSpace(AjPFile file, const AjPStr line);

AjBool         ajReadline(AjPFile file, AjPStr *Pdest);
AjBool         ajReadlinePos(AjPFile file, AjPStr *Pdest, ajlong* Ppos);
AjBool         ajReadlineTrim(AjPFile file, AjPStr *Pdest);
AjBool         ajReadlineTrimPos(AjPFile file, AjPStr *Pdest, ajlong* Ppos);
AjBool         ajReadlineAppend(AjPFile file, AjPStr* Pdest);

AjBool         ajBuffreadLine(AjPFilebuff buff, AjPStr *pdest);
AjBool         ajBuffreadLinePos(AjPFilebuff buff, AjPStr *pdest,
                                 ajlong* Ppos);
AjBool         ajBuffreadLineStore(AjPFilebuff buff, AjPStr* pdest,
                                   AjBool store, AjPStr *astr);
AjBool         ajBuffreadLinePosStore(AjPFilebuff buff, AjPStr* pdest,
                                      ajlong* Ppos, AjBool store, AjPStr *astr);
AjBool         ajBuffreadLineTrim(AjPFilebuff buff, AjPStr* pdest);

/*
** End of prototype definitions
*/


__deprecated void    ajFileBuffLoad (AjPFilebuff thys);
__deprecated AjBool  ajFileBuffGet  (AjPFilebuff thys, AjPStr *pdest);
__deprecated AjBool  ajFileBuffGetL (AjPFilebuff thys, AjPStr *pdest,
                                            ajlong* fpos);
__deprecated AjBool  ajFileBuffGetStore(AjPFilebuff thys, AjPStr* pdest,
                                        AjBool store, AjPStr *astr);
__deprecated AjBool  ajFileBuffGetStoreL(AjPFilebuff thys,
                                         AjPStr* pdest, ajlong* fpos,
                                         AjBool store, AjPStr *astr);
__deprecated AjBool  ajFileBuffGetTrim(AjPFilebuff thys, AjPStr* pdest);

__deprecated AjBool  ajFileGets (AjPFile thys, AjPStr *pdest);
__deprecated AjBool  ajFileGetsL (AjPFile thys,
                                  AjPStr *pdest, ajlong* fpos);
__deprecated AjBool  ajFileGetsTrim  (AjPFile thys, AjPStr *pdest);
__deprecated AjBool  ajFileGetsTrimL (AjPFile thys,
                                      AjPStr *pdest, ajlong* fpos);
__deprecated AjBool  ajFileReadAppend(AjPFile thys, AjPStr* pbuff);
__deprecated AjBool  ajFileReadLine(AjPFile thys, AjPStr *pdest);
__deprecated ajint   ajFileWriteByte(AjPFile thys, char ch);
__deprecated ajint   ajFileWriteInt2(AjPFile thys, ajshort i);
__deprecated ajint   ajFileWriteInt4(AjPFile thys, ajint i);
__deprecated size_t  ajFileRead (void* ptr, size_t element_size,
                                 size_t count, AjPFile thys);
__deprecated size_t  ajFileWrite(AjPFile file, const void* ptr,
                                 size_t element_size, size_t count);
__deprecated ajint   ajFileWriteStr(AjPFile thys,
                                    const AjPStr str, ajuint len);



#endif

#ifdef __cplusplus
}
#endif