/usr/share/doc/t-coffee-examples/sv.aln is in t-coffee-examples 8.99-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 | CLUSTAL FORMAT for T-COFFEE Version_4.40 [http://www.tcoffee.org], CPU=0.63 sec, SCORE=66, Nseq=4, Len=581
CJ033_HUMAN MAASGRGLCKAVAASPFPAWRRDNTEARGGLKPEYDAVVIGAGHNGLVAAAYLQRLGVNT
CJ033_MOUSE ------------------------------------------------------------
Q9D630_MOUSE MAAGGRGLIRALHSSPCPTWKRAQSGANGRLKPEYDAVVIGAGHNGLVAAAYLQRLGVNT
Q8CAN2_MOUSE MAAGGRGLIRALHSSPCPTWKRAQSGANGRLKPEYDAVVIGAGHNGLVAAAYLQRLGVNT
CJ033_HUMAN AVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQIYTDLELKKHGLRLHLRNPYSFT
CJ033_MOUSE ------------------------------------------------------------
Q9D630_MOUSE AVFERRHVIGGARVTEEIIPGFKFSRASYLLSLLRPQICTDLELKKHGLKLHLRDPYSFT
Q8CAN2_MOUSE AVFERRHVIGGAAVTEEIIPGFKFSRASYLLSLLRPQICTDLELK---------------
CJ033_HUMAN PMLEEGAGSKVPRCLLLGTDMAENQKQIAQFSQKDAQVFPKYEEFMHRLALAIDPLLDAA
CJ033_MOUSE ---------------------------------------------MKRLVLAIDPLLDAA
Q9D630_MOUSE PMLEEGTLNRLPRSLLLGTDMAANQKEISQFSRKDAQV----------------------
Q8CAN2_MOUSE ------------------------------------------------------------
CJ033_HUMAN PVDMAAFQHGSLLQRMRSLSTLKPLLKAGRILGAQLPRYYEVLTAPITKVLDQWFESEPL
CJ033_MOUSE PVDTTAFHHGSLLQRLGALSTLKPLLKAGRTLGAQLPQYCEVLTAPISKVLDQWFESEPL
Q9D630_MOUSE ------------------------------------------------------------
Q8CAN2_MOUSE ------------------------------------------------------------
CJ033_HUMAN KATLATDAVIGAMTSPHTPGSGYVLLHHVMGGLEGMQGAWGYVQGGMGALSDAIASSATT
CJ033_MOUSE KATLATDAVIGAMTSPHTPGSGYVLLHHVMGSLEGTQGAWSYVQGGMGALSDAIASSAAT
Q9D630_MOUSE ------------------------------------------------------------
Q8CAN2_MOUSE ------------------------------------------------------------
CJ033_HUMAN HGASIFTEKTVAKVQVNSEGCVQGVVLEDGTEVRSKMVLSNTSPQITFLKLTPQEWLPEE
CJ033_MOUSE RGASIFTEKTVAKVQVNSEGRVQGVTLQDGEEVRSRVVLSCASPQVTFLELTPQEWLPGA
Q9D630_MOUSE ------------------------------------------------------------
Q8CAN2_MOUSE ------------------------------------------------------------
CJ033_HUMAN FLERISQLDTRSPVTKINVAVDRLPSFLAAPNAPRGQPLPHHQCSIHLNCEDTLLLHQAF
CJ033_MOUSE FVKRISQLDTQSPVTKINVAVDRLPNFQAAPNAPGDQPQGHHQCSIHLNCEDTLLLHQAF
Q9D630_MOUSE ------------------------------------------------------------
Q8CAN2_MOUSE --------------------VDRL------------------------------------
CJ033_HUMAN EDAMDGLPSHRPVIELCIPSSLDPTLAPPGCHVVSLFTQYMPYTLAGGKAWDEQERDAYA
CJ033_MOUSE EDAKGGLPSQKPMIELCIPSSLDPTLAPPGCHVVSLFTQYTPYTLAGGKVWNEQEKNTYA
Q9D630_MOUSE ------------------------------------------------------------
Q8CAN2_MOUSE --------------------------AWPG------------------------------
CJ033_HUMAN DRVFDCIEVYAPGFKDSVVGRDILTPPDLERIFGLPGGNIFHCAMSLDQLYFARPVPLHS
CJ033_MOUSE DKVFDCIEAYAPGFKRSVLARDILTPPDLERIFRLPGGNIFHGAMSLDQLYFARPVPQHS
Q9D630_MOUSE -------------------GKVSGD-----------------------------------
Q8CAN2_MOUSE ------------------------------------------------------------
CJ033_HUMAN GYRCPLQGLYLCGSGAHPGGGVMGAAGRNAAHVAFRDLKSM
CJ033_MOUSE DYRCPVQGLYLCGSGAHPGGGVMGAAGRNAAHVVFRDLKNM
Q9D630_MOUSE -----------------------------------------
Q8CAN2_MOUSE -------------------GW--------------------
|