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<a href="Scientific-module.html">Package Scientific</a> ::
<a href="Scientific.Visualization-module.html">Package Visualization</a> ::
Module PyMOL
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<!-- ==================== MODULE DESCRIPTION ==================== -->
<h1 class="epydoc">Module PyMOL</h1><p class="nomargin-top"></p>
<p>Definitions of simple 3D graphics objects and scenes containing them,
in a form that can be fed to the molecular visualization program
PyMOL</p>
<p>Scripts that use this module, directly or indirectly, must be run from
inside PyMOL, otherwise they will terminate with an error message.</p>
<p>This module is almost compatible with the modules VRML and VRML2,
which provide visualization by VRML browsers. There are no Polygon
objects, and the only material attribute supported is diffuse_color.</p>
<p>Example:</p>
<pre class="literalblock">
>>> from Scientific.Visualization.PyMOL import *
>>> scene = Scene([])
>>> scale = ColorScale(10.)
>>> for x in range(11):
>>> color = scale(x)
>>> scene.addObject(Cube(Vector(x, 0., 0.), 0.2,
>>> material=Material(diffuse_color = color)))
>>> scene.view()
</pre>
<!-- ==================== CLASSES ==================== -->
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<a href="Scientific.Visualization.PyMOL.Arrow-class.html" class="summary-name">Arrow</a><br />
Arrow
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Cone
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Cube
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Cylinder
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Base class for composite objects
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Line
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Material specification for graphics objects
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Molecules from a PDB file
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<a href="Scientific.Visualization.PyMOL.PyMOLObject-class.html" class="summary-name">PyMOLObject</a><br />
Graphics object for PyMOL
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PyMOL scene
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Graphics objects representing geometrical shapes
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Sphere
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<td><span class="summary-sig"><a href="Scientific.Visualization.PyMOL-module.html#DiffuseMaterial" class="summary-sig-name">DiffuseMaterial</a>(<span class="summary-sig-arg">color</span>)</span><br />
Returns:
a material with the 'diffuse color' attribute set to color</td>
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a material with the 'diffuse color' attribute set to color</td>
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<dt>Parameters:</dt>
<dd><ul class="nomargin-top">
<li><strong class="pname"><code>color</code></strong> (<a href="Scientific.Visualization.Color.Color-class.html"
class="link">Color</a> or <code>str</code>) - a color object or a predefined color name</li>
</ul></dd>
<dt>Returns: <a href="Scientific.Visualization.PyMOL.Material-class.html"
class="link">Material</a></dt>
<dd>a material with the 'diffuse color' attribute set to color</dd>
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<dt>Parameters:</dt>
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<li><strong class="pname"><code>color</code></strong> (<a href="Scientific.Visualization.Color.Color-class.html"
class="link">Color</a> or <code>str</code>) - a color object or a predefined color name</li>
</ul></dd>
<dt>Returns: <a href="Scientific.Visualization.PyMOL.Material-class.html"
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<dd>a material with the 'diffuse color' attribute set to color</dd>
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