This file is indexed.

/usr/share/doc/python-scientific/Reference/Scientific-module.html is in python-scientific-doc 2.8-2build1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
<?xml version="1.0" encoding="ascii"?>
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
          "DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
<head>
  <title>Scientific</title>
  <link rel="stylesheet" href="epydoc.css" type="text/css" />
  <script type="text/javascript" src="epydoc.js"></script>
</head>

<body bgcolor="white" text="black" link="blue" vlink="#204080"
      alink="#204080">
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">
  <!-- Home link -->
      <th bgcolor="#70b0f0" class="navbar-select"
          >&nbsp;&nbsp;&nbsp;Home&nbsp;&nbsp;&nbsp;</th>

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="identifier-index.html">Indices</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Project homepage -->
      <th class="navbar" align="right" width="100%">
        <table border="0" cellpadding="0" cellspacing="0">
          <tr><th class="navbar" align="center"
            ><a class="navbar" target="_top" href="http://dirac.cnrs-orleans.fr/ScientificPython/">Scientific Python</a></th>
          </tr></table></th>
  </tr>
</table>
<table width="100%" cellpadding="0" cellspacing="0">
  <tr valign="top">
    <td width="100%">
      <span class="breadcrumbs">
        Package&nbsp;Scientific
      </span>
    </td>
    <td>
      <table cellpadding="0" cellspacing="0">
        <!-- hide/show private -->
        <tr><td align="right"><span class="options"
            >[<a href="frames.html" target="_top">frames</a
            >]&nbsp;|&nbsp;<a href="Scientific-module.html"
            target="_top">no&nbsp;frames</a>]</span></td></tr>
      </table>
    </td>
  </tr>
</table>
<!-- ==================== PACKAGE DESCRIPTION ==================== -->
<h1 class="epydoc">Package Scientific</h1><p class="nomargin-top"></p>
<p>ScientificPython is a collection of Python modules that are useful for
  scientific computing. In this collection you will find modules that cover
  basic geometry (vectors, tensors, transformations, vector and tensor 
  fields), quaternions, automatic derivatives, (linear) interpolation, 
  polynomials, elementary statistics, nonlinear least-squares fits, unit 
  calculations, Fortran-compatible text formatting, 3D visualization via 
  VRML, and two Tk widgets for simple line plots and 3D wireframe models. 
  There are also interfaces to the netCDF library (portable structured 
  binary files), to MPI (Message Passing Interface, message-based parallel 
  programming), and to BSPlib (Bulk Synchronous Parallel programming). For 
  details consult the manual.</p>

<hr />
<div class="fields">      <p><strong>Version:</strong>
        2.8
      </p>
</div><!-- ==================== SUBMODULES ==================== -->
<a name="section-Submodules"></a>
<table class="summary" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
  <td align="left" colspan="2" class="table-header">
    <span class="table-header">Submodules</span></td>
</tr>
  <tr><td class="summary">
  <ul class="nomargin">
    <li> <strong class="uidlink"><a href="Scientific.BSP-module.html">Scientific.BSP</a></strong>: <em class="summary">High-level parallelization constructs based on the Bulk Synchronous
        Parallel (BSP) model.</em>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.BSP.Console-module.html">Scientific.BSP.Console</a></strong>: <em class="summary">Interactive console for parallel computing</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.BSP.IO-module.html">Scientific.BSP.IO</a></strong>: <em class="summary">Parallel acces to netCDF files</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.Clustering-module.html">Scientific.Clustering</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.Clustering.AffinityPropagation-module.html">Scientific.Clustering.AffinityPropagation</a></strong>: <em class="summary">Clustering by Affinity Propagation</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.DictWithDefault-module.html">Scientific.DictWithDefault</a></strong>: <em class="summary">Dictionary with default values</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.DistributedComputing-module.html">Scientific.DistributedComputing</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.DistributedComputing.MasterSlave-module.html">Scientific.DistributedComputing.MasterSlave</a></strong>: <em class="summary">Distributed computing using a master-slave model</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.DistributedComputing.TaskManager-module.html">Scientific.DistributedComputing.TaskManager</a></strong>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.FFT-module.html">Scientific.FFT</a></strong>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Functions-module.html">Scientific.Functions</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.Functions.Derivatives-module.html">Scientific.Functions.Derivatives</a></strong>: <em class="summary">Automatic differentiation for functions of any number of variables 
        up to any order</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Functions.FindRoot-module.html">Scientific.Functions.FindRoot</a></strong>: <em class="summary">Newton-Raphson for numerical root finding</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Functions.FirstDerivatives-module.html">Scientific.Functions.FirstDerivatives</a></strong>: <em class="summary">Automatic differentiation for functions with any number of 
        variables</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Functions.Interpolation-module.html">Scientific.Functions.Interpolation</a></strong>: <em class="summary">Interpolation of functions defined on a grid</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Functions.LeastSquares-module.html">Scientific.Functions.LeastSquares</a></strong>: <em class="summary">Non-linear least squares fitting</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Functions.Polynomial-module.html">Scientific.Functions.Polynomial</a></strong>: <em class="summary">Polynomials in any number of variables</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Functions.Rational-module.html">Scientific.Functions.Rational</a></strong>: <em class="summary">Rational functions in one variable</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Functions.Romberg-module.html">Scientific.Functions.Romberg</a></strong>: <em class="summary">Numerical integration using the Romberg algorithm</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.Geometry-module.html">Scientific.Geometry</a></strong>: <em class="summary">Geometrical quantities and objects</em>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.Geometry.Objects3D-module.html">Scientific.Geometry.Objects3D</a></strong>: <em class="summary">Geometrical objects in 3D space</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Geometry.Quaternion-module.html">Scientific.Geometry.Quaternion</a></strong>: <em class="summary">Quaternions as representations of rotations in 3D space</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Geometry.TensorAnalysis-module.html">Scientific.Geometry.TensorAnalysis</a></strong>: <em class="summary">Vector and tensor fields with derivatives</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Geometry.Transformation-module.html">Scientific.Geometry.Transformation</a></strong>: <em class="summary">Linear transformations in 3D space</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.IO-module.html">Scientific.IO</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.IO.ArrayIO-module.html">Scientific.IO.ArrayIO</a></strong>: <em class="summary">Basic support for I/O of one- and two-dimensional numerical arrays 
        to and from plain text files</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.IO.FortranFormat-module.html">Scientific.IO.FortranFormat</a></strong>: <em class="summary">Fortran-style formatted input/output</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.IO.NetCDF-module.html">Scientific.IO.NetCDF</a></strong>: <em class="summary">Python interface to the netCDF library</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.IO.PDB-module.html">Scientific.IO.PDB</a></strong>: <em class="summary">Parsing and writing of Protein Data Bank (PDB) files</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.IO.PDBSpaceGroups-module.html">Scientific.IO.PDBSpaceGroups</a></strong>    </li>
    <li> <strong class="uidlink"><a href="Scientific.IO.TextFile-module.html">Scientific.IO.TextFile</a></strong>: <em class="summary">Text files with line iteration and transparent compression</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.MPI-module.html">Scientific.MPI</a></strong>: <em class="summary">Python interface to the Message Passing Interface (MPI)</em>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.MPI.IO-module.html">Scientific.MPI.IO</a></strong>: <em class="summary">I/O utilities for use with MPI programs</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.NRNG-module.html">Scientific.NRNG</a></strong>    </li>
    <li> <strong class="uidlink"><a href="Scientific.NumberDict-module.html">Scientific.NumberDict</a></strong>: <em class="summary">Dictionary storing numerical values</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Physics-module.html">Scientific.Physics</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.Physics.PhysicalQuantities-module.html">Scientific.Physics.PhysicalQuantities</a></strong>: <em class="summary">Physical quantities with units.</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Physics.Potential-module.html">Scientific.Physics.Potential</a></strong>: <em class="summary">Potential energy functions with automatic gradient evaluation</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.QtWidgets-module.html">Scientific.QtWidgets</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.QtWidgets.QtPlotCanvas-module.html">Scientific.QtWidgets.QtPlotCanvas</a></strong>: <em class="summary">Plot widget for Qt user interfaces</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.QtWidgets.QtVisualizationCanvas-module.html">Scientific.QtWidgets.QtVisualizationCanvas</a></strong>: <em class="summary">3D wireframe canvas widget for Qt</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.Signals-module.html">Scientific.Signals</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.Signals.Models-module.html">Scientific.Signals.Models</a></strong>: <em class="summary">Auto-regressive model for stochastic processes</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.Statistics-module.html">Scientific.Statistics</a></strong>: <em class="summary">Basic monovariate statistics</em>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.Statistics.Histogram-module.html">Scientific.Statistics.Histogram</a></strong>: <em class="summary">Standard and weighted histograms</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.Threading-module.html">Scientific.Threading</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.Threading.TaskManager-module.html">Scientific.Threading.TaskManager</a></strong>: <em class="summary">Parallel task manager for shared-memory multiprocessor machines</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.TkWidgets-module.html">Scientific.TkWidgets</a></strong>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.TkWidgets.TkPlotCanvas-module.html">Scientific.TkWidgets.TkPlotCanvas</a></strong>: <em class="summary">Plot widget for Tk user interfaces</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.TkWidgets.TkVisualizationCanvas-module.html">Scientific.TkWidgets.TkVisualizationCanvas</a></strong>: <em class="summary">3D wireframe canvas widget for Tk</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.Visualization-module.html">Scientific.Visualization</a></strong>: <em class="summary">Scientific visualization</em>
    <ul>
    <li> <strong class="uidlink"><a href="Scientific.Visualization.Color-module.html">Scientific.Visualization.Color</a></strong>: <em class="summary">Color definitions for use in the modules VRML, VRML2, VMD, and 
        PyMOL.</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Visualization.PyMOL-module.html">Scientific.Visualization.PyMOL</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and scenes containing 
        them, in a form that can be fed to the molecular visualization 
        program PyMOL</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Visualization.VMD-module.html">Scientific.Visualization.VMD</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and scenes containing 
        them, in a form that can be fed to the molecular visualization 
        program VMD</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Visualization.VPython-module.html">Scientific.Visualization.VPython</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and scenes containing 
        them, to be rendered using VPython</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Visualization.VRML-module.html">Scientific.Visualization.VRML</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and VRML scenes 
        containing them</em>    </li>
    <li> <strong class="uidlink"><a href="Scientific.Visualization.VRML2-module.html">Scientific.Visualization.VRML2</a></strong>: <em class="summary">Definitions of simple 3D graphics objects and VRML scenes 
        containing them</em>    </li>
    </ul>
    </li>
    <li> <strong class="uidlink"><a href="Scientific.indexing-module.html">Scientific.indexing</a></strong>: <em class="summary">Array indexing utility</em>    </li>
  </ul></td></tr>
</table>

<br />
<!-- ==================== CLASSES ==================== -->
<a name="section-Classes"></a>
<table class="summary" border="1" cellpadding="3"
       cellspacing="0" width="100%" bgcolor="white">
<tr bgcolor="#70b0f0" class="table-header">
  <td align="left" colspan="2" class="table-header">
    <span class="table-header">Classes</span></td>
</tr>
<tr>
    <td width="15%" align="right" valign="top" class="summary">
      <span class="summary-type">&nbsp;</span>
    </td><td class="summary">
        <a href="Scientific.IterationCountExceededError-class.html" class="summary-name">IterationCountExceededError</a>
    </td>
  </tr>
</table>
<!-- ==================== NAVIGATION BAR ==================== -->
<table class="navbar" border="0" width="100%" cellpadding="0"
       bgcolor="#a0c0ff" cellspacing="0">
  <tr valign="middle">
  <!-- Home link -->
      <th bgcolor="#70b0f0" class="navbar-select"
          >&nbsp;&nbsp;&nbsp;Home&nbsp;&nbsp;&nbsp;</th>

  <!-- Tree link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="module-tree.html">Trees</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Index link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="identifier-index.html">Indices</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Help link -->
      <th>&nbsp;&nbsp;&nbsp;<a
        href="help.html">Help</a>&nbsp;&nbsp;&nbsp;</th>

  <!-- Project homepage -->
      <th class="navbar" align="right" width="100%">
        <table border="0" cellpadding="0" cellspacing="0">
          <tr><th class="navbar" align="center"
            ><a class="navbar" target="_top" href="http://dirac.cnrs-orleans.fr/ScientificPython/">Scientific Python</a></th>
          </tr></table></th>
  </tr>
</table>
<table border="0" cellpadding="0" cellspacing="0" width="100%%">
  <tr>
    <td align="left" class="footer">
    Generated by Epydoc 3.0 on Tue Oct 28 14:15:59 2008
    </td>
    <td align="right" class="footer">
      <a target="mainFrame" href="http://epydoc.sourceforge.net"
        >http://epydoc.sourceforge.net</a>
    </td>
  </tr>
</table>

<script type="text/javascript">
  <!--
  // Private objects are initially displayed (because if
  // javascript is turned off then we want them to be
  // visible); but by default, we want to hide them.  So hide
  // them unless we have a cookie that says to show them.
  checkCookie();
  // -->
</script>
</body>
</html>