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/usr/share/massxpert/pol-seqs/protein-3-letters.mxp is in massxpert-data 3.2.0-2.

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<?xml version="1.0"?>
<!-- DTD for polymer sequences, used by the
'massXtreme' mass spectrometry application.
Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->
<!DOCTYPE polseqdata [
<!ELEMENT polseqdata (polchemdef_name,name,code,author,datetime,polseq,le_modif?,re_modif?,prop*)>
<!ELEMENT polchemdef_name (#PCDATA)>
<!ELEMENT name (#PCDATA)>
<!ELEMENT code (#PCDATA)>
<!ELEMENT author (#PCDATA)>
<!ELEMENT datetime (#PCDATA)>
<!ELEMENT polseq (codes|monomer)*>
<!ELEMENT le_modif (#PCDATA)>
<!ELEMENT re_modif (#PCDATA)>
<!ELEMENT codes (#PCDATA)>
<!ELEMENT monomer (code, prop*)>
<!ELEMENT prop (name, data+)>
<!ATTLIST data type (str | int | dbl) "str">
<!ELEMENT data (#PCDATA)>
]>
<polseqdata>
  <polchemdef_name>protein-3-letters</polchemdef_name>
  <name>Protein Sample Polymer Sequence</name>
  <code>SP2003</code>
  <author>rusconi</author>
  <datetime>2007-04-14:17:42</datetime>
  <polseq>
    <codes>AlaArgGluGlnGlyTrpMetAla</codes>
    <monomer>
      <code>Ser</code>
      <prop>
        <name>MODIF</name>
        <data>Phosphorylation</data>
      </prop>
    </monomer>
    <codes>AlaGluGlyTrpSer</codes>
    <monomer>
      <code>Lys</code>
      <prop>
        <name>MODIF</name>
        <data>Acetylation</data>
      </prop>
    </monomer>
    <codes>AlaAlaGluGlyTrpAlaGluGlyTrpAlaGluGlyTrp</codes>
    <monomer>
      <code>Arg</code>
      <prop>
        <name>MODIF</name>
        <data>Acetylation</data>
      </prop>
    </monomer>
  </polseq>
  <le_modif>Acetylation</le_modif>
  <re_modif>Phosphorylation</re_modif>
</polseqdata>