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/usr/share/pyshared/Epigrass/elasticnodes.py is in epigrass 2.0.4-3.

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#!/usr/bin/env python
##This module offers an arbitrary graph visualization in 2d
##The graph is defined from a list of coordinates (nodes) 
##and a list of edges. 
##This modules is based on the PyQ example by the same name.
##copyright 2007 by Flavio Codeco Coelho
##licensed under the GPL

import sys
import math
from PyQt4 import QtCore, QtGui, QtOpenGL
from numpy import  array, sqrt
from numpy.random import randint, uniform

class Edge(QtGui.QGraphicsItem):
    Pi = math.pi
    TwoPi = 2.0 * Pi

    Type = QtGui.QGraphicsItem.UserType + 2

    def __init__(self, sourceNode, destNode):
        QtGui.QGraphicsItem.__init__(self)
        self.arrowSize = 10.0
        self.sourcePoint = QtCore.QPointF()
        self.destPoint = QtCore.QPointF()
        self.setAcceptedMouseButtons(QtCore.Qt.NoButton)
        self.source = sourceNode
        self.dest = destNode
        self.source.addEdge(self)
        self.dest.addEdge(self)
        self.adjust()

    def type(self):
        return Edge.Type

    def sourceNode(self):
        return self.source

    def setSourceNode(self, node):
        self.source = node
        self.adjust()

    def destNode(self):
        return self.dest

    def setDestNode(self, node):
        self.dest = node
        self.adjust()

    def adjust(self):
        if not self.source or not self.dest:
            return

        line = QtCore.QLineF(self.mapFromItem(self.source, 0, 0), self.mapFromItem(self.dest, 0, 0))
        length = line.length()

        if length == 0.0:
            return

        edgeOffset = QtCore.QPointF((line.dx() * 10) / length, (line.dy() * 10) / length)

        self.prepareGeometryChange()
        self.sourcePoint = line.p1() + edgeOffset
        self.destPoint = line.p2() - edgeOffset

    def boundingRect(self):
        if not self.source or not self.dest:
            return QtCore.QRectF()

        penWidth = 1
        extra = (penWidth + self.arrowSize) / 2.0

        return QtCore.QRectF(self.sourcePoint,
                             QtCore.QSizeF(self.destPoint.x() - self.sourcePoint.x(),
                                           self.destPoint.y() - self.sourcePoint.y())).normalized().adjusted(-extra, -extra, extra, extra)

    def paint(self, painter, option, widget):
        if not self.source or not self.dest:
            return

        # Draw the line itself.
        line = QtCore.QLineF(self.sourcePoint, self.destPoint)

        if line.length() == 0.0:
            return

        painter.setPen(QtGui.QPen(QtCore.Qt.black, 1, QtCore.Qt.SolidLine, QtCore.Qt.RoundCap, QtCore.Qt.RoundJoin))
        painter.drawLine(line)

        # Draw the arrows if there's enough room.
        angle = math.acos(line.dx() / line.length())
        if line.dy() >= 0:
            angle = Edge.TwoPi - angle

        sourceArrowP1 = self.sourcePoint + QtCore.QPointF(math.sin(angle + Edge.Pi / 3) * self.arrowSize,
                                                          math.cos(angle + Edge.Pi / 3) * self.arrowSize)
        sourceArrowP2 = self.sourcePoint + QtCore.QPointF(math.sin(angle + Edge.Pi - Edge.Pi / 3) * self.arrowSize,
                                                          math.cos(angle + Edge.Pi - Edge.Pi / 3) * self.arrowSize);   
        destArrowP1 = self.destPoint + QtCore.QPointF(math.sin(angle - Edge.Pi / 3) * self.arrowSize,
                                                      math.cos(angle - Edge.Pi / 3) * self.arrowSize)
        destArrowP2 = self.destPoint + QtCore.QPointF(math.sin(angle - Edge.Pi + Edge.Pi / 3) * self.arrowSize,
                                                      math.cos(angle - Edge.Pi + Edge.Pi / 3) * self.arrowSize)

        painter.setBrush(QtCore.Qt.black)
        painter.drawPolygon(QtGui.QPolygonF([line.p1(), sourceArrowP1, sourceArrowP2]))
        painter.drawPolygon(QtGui.QPolygonF([line.p2(), destArrowP1, destArrowP2]))


class Node(QtGui.QGraphicsItem):
    Type = QtGui.QGraphicsItem.UserType + 1

    def __init__(self, graphWidget):
        QtGui.QGraphicsItem.__init__(self)

        self.graph = graphWidget
        self.edgeList = []
        self.newPos = QtCore.QPointF()
        self.setFlag(QtGui.QGraphicsItem.ItemIsMovable)
        self.setZValue(1)

    def type(self):
        return Node.Type

    def addEdge(self, edge):
        self.edgeList.append(edge)
        edge.adjust()

    def edges(self):
        return self.edgeList

    def calculateForces(self):
        if not self.scene() or self.scene().mouseGrabberItem() is self:
            self.newPos = self.pos()
            return
    
        # Sum up all forces pushing this item away.
        xvel = 0.0
        yvel = 0.0
        for item in self.graph.nodes:
            line = QtCore.QLineF(self.mapFromItem(item, 0, 0), QtCore.QPointF(0, 0))
            dx = line.dx()
            dy = line.dy()
            l = 2.0 * (dx * dx + dy * dy)
            if l > 0:
                xvel += (dx * 150.0) / l
                yvel += (dy * 150.0) / l

        # Now subtract all forces pulling items together.
        weight = (len(self.edgeList) + 1) * 10.0
        for edge in self.edgeList:
            if edge.sourceNode() is self:
                pos = self.mapFromItem(edge.destNode(), 0, 0)
            else:
                pos = self.mapFromItem(edge.sourceNode(), 0, 0)
            xvel += pos.x() / weight
            yvel += pos.y() / weight
    
        if QtCore.qAbs(xvel) < 0.1 and QtCore.qAbs(yvel) < 0.1:
            xvel = yvel = 0.0

        sceneRect = self.scene().sceneRect()
        self.newPos = self.pos() + QtCore.QPointF(xvel, yvel)
        self.newPos.setX(min(max(self.newPos.x(), sceneRect.left() + 10), sceneRect.right() - 10))
        self.newPos.setY(min(max(self.newPos.y(), sceneRect.top() + 10), sceneRect.bottom() - 10))

    def advance(self):
        if self.newPos == self.pos():
            return False

        self.setPos(self.newPos)
        return True

    def boundingRect(self):
        adjust = 2.0
        return QtCore.QRectF(-10 - adjust, -10 - adjust,
                             23 + adjust, 23 + adjust)

    def shape(self):
        path = QtGui.QPainterPath()
        path.addEllipse(-10, -10, 20, 20)
        return path

    def paint(self, painter, option, widget):
        painter.setPen(QtCore.Qt.NoPen)
        painter.setBrush(QtCore.Qt.darkGray)
        painter.drawEllipse(-7, -7, 20, 20)

        gradient = QtGui.QRadialGradient(-3, -3, 10)
        if option.state & QtGui.QStyle.State_Sunken:
            gradient.setCenter(3, 3)
            gradient.setFocalPoint(3, 3)
            gradient.setColorAt(1, QtGui.QColor(QtCore.Qt.yellow).light(120))
            gradient.setColorAt(0, QtGui.QColor(QtCore.Qt.darkYellow).light(120))
        else:
            gradient.setColorAt(0, QtCore.Qt.yellow)
            gradient.setColorAt(1, QtCore.Qt.darkYellow)

        painter.setBrush(QtGui.QBrush(gradient))
        painter.setPen(QtGui.QPen(QtCore.Qt.black, 0))
        painter.drawEllipse(-10, -10, 20, 20)

    def itemChange(self, change, value):
        if change == QtGui.QGraphicsItem.ItemPositionChange:
            for edge in self.edgeList:
                edge.adjust()
            self.graph.itemMoved()

        return QtGui.QGraphicsItem.itemChange(self, change, value)

    def mousePressEvent(self, event):
        self.update()
        QtGui.QGraphicsItem.mousePressEvent(self, event)

    def mouseReleaseEvent(self, event):
        self.update()
        QtGui.QGraphicsItem.mouseReleaseEvent(self, event)


class GraphWidget(QtGui.QGraphicsView):
    def __init__(self,poslist,elist):
        """
        Will generate a graph with as many nodes as
        elements in poslist
        poslist is a a list of (x,y) tuples.
        elist is an edge list (s,d) refering to positions in poslist.
        """
        QtGui.QGraphicsView.__init__(self)

        self.timerId = 0
        xmin,ymin = array(poslist).min(axis=0)
        xmax,ymax = array(poslist).max(axis=0)
        xxs = (xmax-xmin)*1.1 #percentage of extra space
        yxs = (ymax-ymin)*1.1 #percentage of extra space
        #calculating center of scene
        xc = (xmax+xmin)/2. 
        yc = (ymax+ymin)/2.
        #creating the scene
        scene = QtGui.QGraphicsScene(self)
        scene.setItemIndexMethod(QtGui.QGraphicsScene.NoIndex)
        scene.setSceneRect(xmin+xxs, ymin+yxs, xmax+xxs, ymax+yxs)
        self.setScene(scene)
        #self.setViewport(QtOpenGL.QGLWidget())
        self.setCacheMode(QtGui.QGraphicsView.CacheBackground)
        self.setRenderHint(QtGui.QPainter.Antialiasing)
        self.setTransformationAnchor(QtGui.QGraphicsView.AnchorUnderMouse)
        self.setResizeAnchor(QtGui.QGraphicsView.AnchorViewCenter)
        
        #create an add nodes
        self.nlist = []
        for c in poslist:
            node = Node(self)
            node.setPos(*c)
            self.nlist.append(node)
            scene.addItem(node)
        #figure out center node
        ecc =[sqrt((p[0]-xc)**2+(p[1]-yc)**2) for p in array(poslist)]#Thanks Pythagoras!
        cnpos = ecc.index(min(ecc))
        self.centerNode = self.nlist[cnpos]
        #Adding Edges
        for e in elist:
            scene.addItem(Edge(self.nlist[e[0]], self.nlist[e[1]]))

        self.scale(0.99, 0.99)
        self.setMinimumSize(400, 400)
        self.setWindowTitle(self.tr("Network View"))
        self.nodes = [item for item in self.scene().items() if isinstance(item, Node)]

    def itemMoved(self):
        if not self.timerId:
            self.timerId = self.startTimer(1000 / 25)

    def keyPressEvent(self, event):
        key = event.key()

        if key == QtCore.Qt.Key_Up:
            self.centerNode.moveBy(0, -20)
        elif key == QtCore.Qt.Key_Down:
            self.centerNode.moveBy(0, 20)
        elif key == QtCore.Qt.Key_Left:
            self.centerNode.moveBy(-20, 0)
        elif key == QtCore.Qt.Key_Right:
            self.centerNode.moveBy(20, 0)
        elif key == QtCore.Qt.Key_Plus:
            self.scaleView(1.2)
        elif key == QtCore.Qt.Key_Minus:
            self.scaleView(1 / 1.2)
        elif key == QtCore.Qt.Key_Space or key == QtCore.Qt.Key_Enter:
            for item in self.scene().items():
                if isinstance(item, Node):
                    item.setPos(-150 + QtCore.qrand() % 300, -150 + QtCore.qrand() % 300)
        else:
            QtGui.QGraphicsView.keyPressEvent(self, event)

    def timerEvent(self, event):
        nodes = self.nodes#[item for item in self.scene().items() if isinstance(item, Node)]

        for node in nodes:
            node.calculateForces()

        itemsMoved = False
        for node in nodes:
            if node.advance():
                itemsMoved = True

        if not itemsMoved:
            self.killTimer(self.timerId)
            self.timerId = 0

    def wheelEvent(self, event):
        self.scaleView(math.pow(2.0, -event.delta() / 240.0))

    def drawBackground(self, painter, rect):
        # Shadow.
        sceneRect = self.sceneRect()
        rightShadow = QtCore.QRectF(sceneRect.right(), sceneRect.top() + 5, 5, sceneRect.height())
        bottomShadow = QtCore.QRectF(sceneRect.left() + 5, sceneRect.bottom(), sceneRect.width(), 5)
        if rightShadow.intersects(rect) or rightShadow.contains(rect):
            painter.fillRect(rightShadow, QtCore.Qt.darkGray)
        if bottomShadow.intersects(rect) or bottomShadow.contains(rect):
            painter.fillRect(bottomShadow, QtCore.Qt.darkGray)

        # Fill.
        gradient = QtGui.QLinearGradient(sceneRect.topLeft(), sceneRect.bottomRight())
        gradient.setColorAt(0, QtCore.Qt.white)
        gradient.setColorAt(1, QtCore.Qt.lightGray)
        painter.fillRect(rect.intersect(sceneRect), QtGui.QBrush(gradient))
        painter.setBrush(QtCore.Qt.NoBrush)
        painter.drawRect(sceneRect)

        # Text.
        textRect = QtCore.QRectF(sceneRect.left() + 4, sceneRect.top() + 4,
                                 sceneRect.width() - 4, sceneRect.height() - 4)
        message = self.tr("Click and drag the nodes around, and zoom with the "
                          "mouse wheel or the '+' and '-' keys")

        font = painter.font()
        font.setBold(True)
        font.setPointSize(10)
        painter.setFont(font)
        painter.setPen(QtCore.Qt.lightGray)
        painter.drawText(textRect.translated(2, 2), message)
        painter.setPen(QtCore.Qt.black)
        painter.drawText(textRect, message)

    def scaleView(self, scaleFactor):
        factor = self.matrix().scale(scaleFactor, scaleFactor).mapRect(QtCore.QRectF(0, 0, 1, 1)).width()

        if factor < 0.07 or factor > 100:
            return

        self.scale(scaleFactor, scaleFactor)


if __name__ == "__main__":
    app = QtGui.QApplication(sys.argv)
    QtCore.qsrand(QtCore.QTime(0,0,0).secsTo(QtCore.QTime.currentTime()))
    # Original PyQt graph example
#    poslist = [(-50, -50),(0, -50),(50, -50),(-50, 0),(0, 0),(50, 0),(-50, 50),(0, 50),(50, 50)]
#    elist = [(0,1),(1,2),(1,4),(2,5),(3,0),(3,4),(4,5),(4,7),(5,8),(6,3),(7,6),(8,7)]
    # larger random graph
    poslist = uniform(-180,180,size=(50,2)).tolist()
    elist = list(set([tuple(randint(0,50,2)) for i in xrange(50)]))
    widget = GraphWidget(poslist,elist)
    widget.show()

    sys.exit(app.exec_())