/usr/share/avogadro/fragments/cyclic sugars/alpha-D-ribopyranose.cml is in avogadro-data 1.0.3-1ubuntu4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 | <?xml version="1.0"?>
<molecule xmlns="http://www.xml-cml.org/schema" id="alpha-D-ribopyranose.out">
<atomArray>
<atom id="a1" elementType="C" x3="1.369900" y3="0.544300" z3="-0.507600"/>
<atom id="a2" elementType="C" x3="0.223700" y3="-0.139600" z3="-1.309300"/>
<atom id="a3" elementType="C" x3="-0.990100" y3="-0.464000" z3="-0.411300"/>
<atom id="a4" elementType="C" x3="-1.390300" y3="0.789300" z3="0.412700"/>
<atom id="a5" elementType="C" x3="-0.180700" y3="1.234400" z3="1.247600"/>
<atom id="a6" elementType="O" x3="0.861000" y3="1.622200" z3="0.340200"/>
<atom id="a7" elementType="O" x3="-1.755200" y3="1.833500" z3="-0.511400"/>
<atom id="a8" elementType="O" x3="-2.082200" y3="-0.932300" z3="-1.179600"/>
<atom id="a9" elementType="O" x3="-0.131300" y3="0.726500" z3="-2.386000"/>
<atom id="a10" elementType="O" x3="2.240400" y3="1.209900" z3="-1.367900"/>
<atom id="a11" elementType="H" x3="0.175300" y3="0.455600" z3="1.942300"/>
<atom id="a12" elementType="H" x3="-0.366700" y3="2.167500" z3="1.815200"/>
<atom id="a13" elementType="H" x3="1.991500" y3="-0.130900" z3="0.109400"/>
<atom id="a14" elementType="H" x3="0.601100" y3="-1.047600" z3="-1.837700"/>
<atom id="a15" elementType="H" x3="-0.776100" y3="-1.327400" z3="0.263500"/>
<atom id="a16" elementType="H" x3="-2.313100" y3="0.605600" z3="1.004500"/>
<atom id="a17" elementType="H" x3="1.729200" y3="1.684000" z3="-2.088300"/>
<atom id="a18" elementType="H" x3="-0.784600" y3="1.422600" z3="-2.071000"/>
<atom id="a19" elementType="H" x3="-1.071400" y3="2.555500" z3="-0.491800"/>
<atom id="a20" elementType="H" x3="-2.317800" y3="-0.269100" z3="-1.879700"/>
</atomArray>
<bondArray>
<bond atomRefs2="a9 a18" order="1"/>
<bond atomRefs2="a9 a2" order="1"/>
<bond atomRefs2="a17 a10" order="1"/>
<bond atomRefs2="a20 a8" order="1"/>
<bond atomRefs2="a14 a2" order="1"/>
<bond atomRefs2="a10 a1" order="1"/>
<bond atomRefs2="a2 a1" order="1"/>
<bond atomRefs2="a2 a3" order="1"/>
<bond atomRefs2="a8 a3" order="1"/>
<bond atomRefs2="a7 a19" order="1"/>
<bond atomRefs2="a7 a4" order="1"/>
<bond atomRefs2="a1 a13" order="1"/>
<bond atomRefs2="a1 a6" order="1"/>
<bond atomRefs2="a3 a15" order="1"/>
<bond atomRefs2="a3 a4" order="1"/>
<bond atomRefs2="a6 a5" order="1"/>
<bond atomRefs2="a4 a16" order="1"/>
<bond atomRefs2="a4 a5" order="1"/>
<bond atomRefs2="a5 a12" order="1"/>
<bond atomRefs2="a5 a11" order="1"/>
</bondArray>
</molecule>
|