This file is indexed.

/usr/share/avogadro/fragments/amino_acids/L-4-nitrophenylalanine.cml is in avogadro-data 1.0.3-1ubuntu4.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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<?xml version="1.0" encoding="UTF-8"?>
<molecule xmlns="http://www.xml-cml.org/schema"
          xmlns:cml="http://www.xml-cml.org/dict/cml"
	  xmlns:units="http://www.xml-cml.org/units/units"
          xmlns:xsd="http://www.w3c.org/2001/XMLSchema"
          xmlns:iupac="http://www.iupac.org"
          id="CS_S-2-amino-3-4-nitrophenylpropanoic_acid">
  <formula concise=" C 9 H 10 N 2 O 4 "/>
  <identifier convention="iupac:inchi" value="1/C9H10N2O4/c10-8(9(12)13)5-6-1-3-7(4-2-6)11(14)15/h1-4,8H,5,10H2,(H,12,13)/t8-/m0/s1"/>
  <name convention="IUPAC">(S)-2-Amino-3-(4-nitrophenyl)propanoic acid</name>
  <atomArray>
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    <atom id="a25" elementType="H" x3="-0.191212" y3="2.431096" z3="-2.412792"/>
  </atomArray>
  <bondArray>
    <bond atomRefs2="a1 a2" order="1"/>
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    <bond atomRefs2="a3 a4" order="1"/>
    <bond atomRefs2="a3 a7" order="1"/>
    <bond atomRefs2="a4 a5" order="2"/>
    <bond atomRefs2="a4 a18" order="1"/>
    <bond atomRefs2="a5 a6" order="1"/>
    <bond atomRefs2="a5 a19" order="1"/>
    <bond atomRefs2="a6 a10" order="1"/>
    <bond atomRefs2="a7 a8" order="2"/>
    <bond atomRefs2="a7 a9" order="2"/>
    <bond atomRefs2="a10 a11" order="1"/>
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    <bond atomRefs2="a11 a12" order="1"/>
    <bond atomRefs2="a11 a15" order="1"/>
    <bond atomRefs2="a11 a22" order="1"/>
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    <bond atomRefs2="a12 a14" order="1"/>
    <bond atomRefs2="a14 a23" order="1"/>
    <bond atomRefs2="a15 a24" order="1"/>
    <bond atomRefs2="a15 a25" order="1"/>
  </bondArray>
  <propertyList>
    <property dictRef="cml:molwt" title="Molecular weight">
      <scalar dataType="xsd:double" dictRef="cml:molwt" units="units:g">210.1867</scalar>
    </property>
    <property dictRef="cml:monoisotopicwt" title="Monoisotopic weight">
      <scalar dataType="xsd:double" dictRef="cml:monoisotopicwt" units="units:g">210.0640568</scalar>
    </property>
  </propertyList>
</molecule>