/usr/share/avogadro/builder/amino/l-pro.zmat is in avogadro-data 1.0.3-1ubuntu4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | N 0.000000 0.000000 0.000000 0 0 0 -0.229034 N
C 1.455687 0.000000 0.000000 1 0 0 0.090941 CA
C 1.541633 112.289800 0.000000 2 1 0 0.217989 C
O 1.226513 124.759827 355.316297 3 2 1 -0.287199 O
H 1.096060 109.465011 119.859604 2 1 3 0.055965 HA
C 1.447100 112.493640 108.461442 1 2 3 0.014812 CD
H 1.095501 108.127757 107.625863 6 1 2 0.044093 HD1
H 1.094018 110.656109 226.870198 6 1 2 0.044093 HD2
C 1.521203 104.227867 348.819966 6 1 2 -0.036968 CG
H 1.096685 110.072039 272.506853 9 6 1 0.027862 HG1
H 1.093430 112.604797 151.700321 9 6 1 0.027862 HG2
C 1.529016 103.197849 29.561801 9 6 1 -0.027502 CB
H 1.093652 112.022261 199.723275 12 9 6 0.028543 HB1
H 1.097118 109.193355 79.901305 12 9 6 0.028543 HB2
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