/usr/share/avogadro/builder/amino/d-trp.zmat is in avogadro-data 1.0.3-1ubuntu4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | N 0.000000 0.000000 0.000000 0 0 0 -0.244957 N
C 1.485937 0.000000 0.000000 1 0 0 0.091665 CA
C 1.537258 108.068082 0.000000 2 1 0 0.218042 C
O 1.205881 125.382128 156.174550 3 2 1 -0.287197 O
C 1.542561 114.895551 122.947312 2 1 3 -0.001660 CB
H 1.117305 109.088186 187.164563 5 2 1 0.033366 HB1
H 1.109777 110.530804 301.386796 5 2 1 0.033366 HB2
C 1.482336 111.237326 65.655663 5 2 1 -0.020419 CG
C 1.444655 125.743915 68.063797 8 5 2 0.002882 CD1
C 1.435425 106.997686 181.232356 9 8 5 0.046731 NE1
C 1.410996 122.038206 179.215877 10 9 8 -0.037791 HE1
H 1.084530 120.972857 180.507012 11 10 9 0.063821 CE2
C 1.382173 117.098808 0.734064 11 10 9 -0.059784 CD2
H 1.090348 119.916566 180.079608 13 11 10 0.061822 CE3
C 1.421268 121.637648 0.266002 13 11 10 -0.061066 HE3
H 1.088652 118.442053 179.003608 15 13 11 0.061778 CZ3
C 1.383002 121.422504 359.350101 15 13 11 -0.052326 HZ3
H 1.088116 121.369228 179.369861 17 15 13 0.062417 CH2
N 1.403447 107.662961 359.448807 10 9 8 -0.360366 HH2
C 1.388180 126.741668 248.597665 8 5 2 0.005969 CZ2
H 1.075398 129.198074 358.071150 20 8 5 0.080975 HZ2
H 1.000406 125.982118 182.192496 19 10 9 0.165343 HD1
H 1.019404 110.191755 157.186525 1 2 3 0.141371 H
H 1.127608 108.385585 244.931869 2 1 3 0.056018 HA
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