/usr/share/avogadro/builder/amino/d-gln.zmat is in avogadro-data 1.0.3-1ubuntu4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 | N 0.000000 0.000000 0.000000 0 0 0 -0.245274 N
C 1.477642 0.000000 0.000000 1 0 0 0.088098 CA
C 1.539379 111.148919 0.000000 2 1 0 0.217725 C
O 1.206287 128.077011 277.173472 3 2 1 -0.287208 O
C 1.539195 111.168244 123.793826 2 1 3 -0.020719 CB
H 1.112280 109.560237 191.743459 5 2 1 0.028949 CG
H 1.109603 110.183616 307.101345 5 2 1 0.028949 CD
C 1.529476 110.992071 70.144847 5 2 1 0.025606 OE1
H 1.110597 110.418333 302.351956 8 5 2 0.035882 NE2
H 1.112706 110.492315 58.289067 8 5 2 0.035882 HA
C 1.515188 110.457287 177.758012 8 5 2 0.210543 H
O 1.218405 124.156058 264.844138 11 8 5 -0.276033 HB1
N 1.395707 116.234833 84.911119 11 8 5 -0.329321 HB2
H 1.008148 119.777853 180.377236 13 11 8 0.144929 HG1
H 1.002020 123.556467 359.805749 13 11 8 0.144929 HG2
H 1.129433 107.831512 243.844307 2 1 3 0.055702 HE21
H 1.015335 112.133752 297.034003 1 2 3 0.141360 HE22
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