This package is 659.8 KB.
It is available at http://archive.ubuntu.com/ubuntu/pool/universe/t/tophat/tophat_2.1.1+dfsg1-1_amd64.deb
.
View its full control file here:
debian/control.
fast splice junction mapper for RNA-Seq reads
This package depends on:
libboost-system1.65.1, libboost-thread1.65.1, libc6 (>= 2.15), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.3.3), python, bowtie2 | bowtie, samtools (>= 1.5).
This package does not recommend any other package.
This package suggests:
cufflinks.
This package does not conflict with any other package.
tophat 2.1.1+dfsg1-1 is in ubuntu - bionic / universe. This package's architecture is: amd64.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
/usr/
|
root:root | 0o755 | ||
/usr/bin/
|
root:root | 0o755 | ||
/usr/bin/bam2fastx
|
application/x-sharedlib | root:root | 0o755 | 131.8 KB |
/usr/bin/bam_merge
|
application/x-sharedlib | root:root | 0o755 | 170.0 KB |
/usr/bin/bed_to_juncs
|
text/x-python | root:root | 0o755 | 1.9 KB |
/usr/bin/contig_to_chr_coords
|
text/x-python | root:root | 0o755 | 4.5 KB |
/usr/bin/fix_map_ordering
|
application/x-sharedlib | root:root | 0o755 | 170.0 KB |
/usr/bin/gtf_juncs
|
application/x-sharedlib | root:root | 0o755 | 258.1 KB |
/usr/bin/gtf_to_fasta
|
application/x-sharedlib | root:root | 0o755 | 278.1 KB |
/usr/bin/juncs_db
|
application/x-sharedlib | root:root | 0o755 | 190.1 KB |
/usr/bin/long_spanning_reads
|
application/x-sharedlib | root:root | 0o755 | 474.1 KB |
/usr/bin/map2gtf
|
application/x-sharedlib | root:root | 0o755 | 194.1 KB |
/usr/bin/prep_reads
|
application/x-sharedlib | root:root | 0o755 | 226.7 KB |
/usr/bin/sam_juncs
|
application/x-sharedlib | root:root | 0o755 | 278.1 KB |
/usr/bin/segment_juncs
|
application/x-sharedlib | root:root | 0o755 | 534.4 KB |
/usr/bin/sra_to_solid
|
text/x-python | root:root | 0o755 | 716 bytes |
/usr/bin/tophat
|
text/x-python | root:root | 0o755 | 167.6 KB |
/usr/bin/tophat2
|
text/x-shellscript | root:root | 0o755 | 166 bytes |
/usr/bin/tophat-fusion-post
|
text/x-python | root:root | 0o755 | 115.6 KB |
/usr/bin/tophat_reports
|
application/x-sharedlib | root:root | 0o755 | 538.1 KB |
/usr/share/
|
root:root | 0o755 | ||
/usr/share/doc/
|
root:root | 0o755 | ||
/usr/share/doc/tophat/
|
root:root | 0o755 | ||
/usr/share/doc/tophat/changelog.Debian.gz
|
application/gzip | root:root | 0o644 | 1.5 KB |
/usr/share/doc/tophat/copyright
|
text/plain | root:root | 0o644 | 2.7 KB |
/usr/share/doc/tophat/README
|
text/plain | root:root | 0o644 | 789 bytes |
/usr/share/doc/tophat/README.test
|
text/plain | root:root | 0o644 | 261 bytes |
/usr/share/doc/tophat/run-unit-test
|
text/x-shellscript | root:root | 0o644 | 266 bytes |
/usr/share/doc/tophat/test_data/
|
root:root | 0o755 | ||
/usr/share/doc/tophat/test_data/reads_1.fq.gz
|
application/gzip | root:root | 0o644 | 1.8 KB |
/usr/share/doc/tophat/test_data/reads_2.fq.gz
|
application/gzip | root:root | 0o644 | 1.8 KB |
/usr/share/doc/tophat/test_data/test_ref.1.bt2.gz
|
application/gzip | root:root | 0o644 | 5.2 KB |
/usr/share/doc/tophat/test_data/test_ref.1.ebwt.gz
|
application/gzip | root:root | 0o644 | 5.2 KB |
/usr/share/doc/tophat/test_data/test_ref.2.bt2
|
application/octet-stream | root:root | 0o644 | 168 bytes |
/usr/share/doc/tophat/test_data/test_ref.2.ebwt
|
application/octet-stream | root:root | 0o644 | 88 bytes |
/usr/share/doc/tophat/test_data/test_ref.3.bt2
|
application/octet-stream | root:root | 0o644 | 17 bytes |
/usr/share/doc/tophat/test_data/test_ref.4.bt2
|
application/octet-stream | root:root | 0o644 | 163 bytes |
/usr/share/doc/tophat/test_data/test_ref.fa
|
text/plain | root:root | 0o644 | 680 bytes |
/usr/share/doc/tophat/test_data/test_ref.rev.1.bt2.gz
|
application/gzip | root:root | 0o644 | 5.2 KB |
/usr/share/doc/tophat/test_data/test_ref.rev.1.ebwt.gz
|
application/gzip | root:root | 0o644 | 5.1 KB |
/usr/share/doc/tophat/test_data/test_ref.rev.2.bt2
|
application/octet-stream | root:root | 0o644 | 168 bytes |
/usr/share/doc/tophat/test_data/test_ref.rev.2.ebwt
|
application/octet-stream | root:root | 0o644 | 88 bytes |
/usr/share/man/
|
root:root | 0o755 | ||
/usr/share/man/man1/
|
root:root | 0o755 | ||
/usr/share/man/man1/bam2fastx.1.gz
|
application/gzip | root:root | 0o644 | 1.0 KB |
/usr/share/man/man1/bed_to_juncs.1.gz
|
application/gzip | root:root | 0o644 | 320 bytes |
/usr/share/man/man1/contig_to_chr_coords.1.gz
|
application/gzip | root:root | 0o644 | 353 bytes |
/usr/share/man/man1/tophat.1.gz
|
application/gzip | root:root | 0o644 | 1.9 KB |