About

This package is 10.6 MB. It is available at http://archive.ubuntu.com/ubuntu/pool/universe/s/seqan2/seqan-apps_2.3.2+dfsg2-4ubuntu2_amd64.deb .

View its full control file here: debian/control.

Description

C++ library for the analysis of biological sequences

Relations

This package depends on: libbz2-1.0, libc6 (>= 2.23), libgcc1 (>= 1:3.4), libgomp1 (>= 4.9), libstdc++6 (>= 7), zlib1g (>= 1:1.1.4).

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

seqan-apps 2.3.2+dfsg2-4ubuntu2 is in ubuntu - bionic / universe. This package's architecture is: amd64.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/bin/ root:root 0o755
/usr/bin/alf root:root 0o777
/usr/bin/gustaf root:root 0o777
/usr/bin/insegt root:root 0o777
/usr/bin/mason_frag_sequencing root:root 0o777
/usr/bin/mason_genome root:root 0o777
/usr/bin/mason_materializer root:root 0o777
/usr/bin/mason_methylation root:root 0o777
/usr/bin/micro_razers root:root 0o777
/usr/bin/pair_align root:root 0o777
/usr/bin/rabema_build_gold_standard root:root 0o777
/usr/bin/rabema_evaluate root:root 0o777
/usr/bin/rabema_prepare_sam root:root 0o777
/usr/bin/razers root:root 0o777
/usr/bin/razers3 root:root 0o777
/usr/bin/sak root:root 0o777
/usr/bin/seqan_tcoffee root:root 0o777
/usr/bin/snp_store root:root 0o777
/usr/bin/splazers root:root 0o777
/usr/bin/stellar root:root 0o777
/usr/bin/tree_recon root:root 0o777
/usr/bin/yara_indexer root:root 0o777
/usr/bin/yara_mapper root:root 0o777
/usr/lib/ root:root 0o755
/usr/lib/seqan/ root:root 0o755
/usr/lib/seqan/bin/ root:root 0o755
/usr/lib/seqan/bin/alf application/x-sharedlib root:root 0o755 575.4 KB
/usr/lib/seqan/bin/bam2roi application/x-sharedlib root:root 0o755 591.3 KB
/usr/lib/seqan/bin/bed_sort.sh text/x-shellscript root:root 0o755 1.3 KB
/usr/lib/seqan/bin/bisar application/x-sharedlib root:root 0o755 987.6 KB
/usr/lib/seqan/bin/casbar application/x-sharedlib root:root 0o755 1.3 MB
/usr/lib/seqan/bin/compute_gain application/x-sharedlib root:root 0o755 655.4 KB
/usr/lib/seqan/bin/dfi application/x-sharedlib root:root 0o755 715.4 KB
/usr/lib/seqan/bin/fiona application/x-sharedlib root:root 0o755 1.6 MB
/usr/lib/seqan/bin/four2three application/x-sharedlib root:root 0o755 583.4 KB
/usr/lib/seqan/bin/fx_bam_coverage application/x-sharedlib root:root 0o755 491.3 KB
/usr/lib/seqan/bin/gff_sort.sh text/x-shellscript root:root 0o755 1.3 KB
/usr/lib/seqan/bin/gustaf application/x-sharedlib root:root 0o755 1.0 MB
/usr/lib/seqan/bin/gustaf_mate_joining application/x-sharedlib root:root 0o755 599.4 KB
/usr/lib/seqan/bin/insegt application/x-sharedlib root:root 0o755 755.3 KB
/usr/lib/seqan/bin/mason_frag_sequencing application/x-sharedlib root:root 0o755 799.4 KB
/usr/lib/seqan/bin/mason_genome application/x-sharedlib root:root 0o755 463.4 KB
/usr/lib/seqan/bin/mason_materializer application/x-sharedlib root:root 0o755 847.4 KB
/usr/lib/seqan/bin/mason_methylation application/x-sharedlib root:root 0o755 599.4 KB
/usr/lib/seqan/bin/mason_simulator application/x-sharedlib root:root 0o755 1.1 MB
/usr/lib/seqan/bin/mason_splicing application/x-sharedlib root:root 0o755 871.4 KB
/usr/lib/seqan/bin/mason_variator application/x-sharedlib root:root 0o755 827.4 KB
/usr/lib/seqan/bin/micro_razers application/x-sharedlib root:root 0o755 5.7 MB
/usr/lib/seqan/bin/pair_align application/x-sharedlib root:root 0o755 6.1 MB
/usr/lib/seqan/bin/param_chooser application/x-sharedlib root:root 0o755 446.2 KB
/usr/lib/seqan/bin/plot.awk text/plain root:root 0o644 1.2 KB
/usr/lib/seqan/bin/ps2pswLinks.gawk text/plain root:root 0o644 2.3 KB
/usr/lib/seqan/bin/rabema_build_gold_standard application/x-sharedlib root:root 0o755 639.3 KB
/usr/lib/seqan/bin/rabema_evaluate application/x-sharedlib root:root 0o755 635.3 KB
/usr/lib/seqan/bin/rabema_prepare_sam application/x-sharedlib root:root 0o755 579.3 KB
/usr/lib/seqan/bin/razers application/x-sharedlib root:root 0o755 5.9 MB
/usr/lib/seqan/bin/razers3 application/x-sharedlib root:root 0o755 9.8 MB
/usr/lib/seqan/bin/rep_sep application/x-sharedlib root:root 0o755 495.2 KB
/usr/lib/seqan/bin/roi_feature_projection application/x-sharedlib root:root 0o755 639.3 KB
/usr/lib/seqan/bin/roi_plot_9.sh text/x-shellscript root:root 0o755 1.5 KB
/usr/lib/seqan/bin/roi_plot_thumbnails application/x-sharedlib root:root 0o755 447.3 KB
/usr/lib/seqan/bin/roi_sort.sh text/x-shellscript root:root 0o755 1.8 KB
/usr/lib/seqan/bin/s4_join application/x-sharedlib root:root 0o755 1.8 MB
/usr/lib/seqan/bin/s4_search application/x-sharedlib root:root 0o755 1.8 MB
/usr/lib/seqan/bin/sak application/x-sharedlib root:root 0o755 611.4 KB
/usr/lib/seqan/bin/sam2matrix application/x-sharedlib root:root 0o755 535.4 KB
/usr/lib/seqan/bin/samcat application/x-sharedlib root:root 0o755 607.3 KB
/usr/lib/seqan/bin/seqan_tcoffee application/x-sharedlib root:root 0o755 1.4 MB
/usr/lib/seqan/bin/seqcons2 application/x-sharedlib root:root 0o755 1.2 MB
/usr/lib/seqan/bin/sgip application/x-sharedlib root:root 0o755 363.2 KB
/usr/lib/seqan/bin/snp_store application/x-sharedlib root:root 0o755 1.0 MB
/usr/lib/seqan/bin/splazers application/x-sharedlib root:root 0o755 1.6 MB
/usr/lib/seqan/bin/stellar application/x-sharedlib root:root 0o755 1.7 MB
/usr/lib/seqan/bin/tree_recon application/x-sharedlib root:root 0o755 503.3 KB
/usr/lib/seqan/bin/yara_indexer application/x-sharedlib root:root 0o755 2.3 MB
/usr/lib/seqan/bin/yara_mapper application/x-sharedlib root:root 0o755 7.6 MB
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/seqan-apps/ root:root 0o755
/usr/share/doc/seqan-apps/alf/ root:root 0o755
/usr/share/doc/seqan-apps/alf/example/ root:root 0o755
/usr/share/doc/seqan-apps/alf/example/small.fasta text/plain root:root 0o644 1.0 KB
/usr/share/doc/seqan-apps/alf/README.gz application/gzip root:root 0o644 2.1 KB
/usr/share/doc/seqan-apps/bs_tools/ root:root 0o755
/usr/share/doc/seqan-apps/bs_tools/README text/plain root:root 0o644 2.4 KB
/usr/share/doc/seqan-apps/changelog.Debian.gz application/gzip root:root 0o644 1.1 KB
/usr/share/doc/seqan-apps/copyright text/plain root:root 0o644 8.0 KB
/usr/share/doc/seqan-apps/dfi/ root:root 0o755
/usr/share/doc/seqan-apps/dfi/example/ root:root 0o755
/usr/share/doc/seqan-apps/dfi/example/fasta1.fa text/plain root:root 0o644 14 bytes
/usr/share/doc/seqan-apps/dfi/example/fasta2.fa text/plain root:root 0o644 14 bytes
/usr/share/doc/seqan-apps/dfi/README.gz application/gzip root:root 0o644 1.9 KB
/usr/share/doc/seqan-apps/fiona/ root:root 0o755
/usr/share/doc/seqan-apps/fiona/example/ root:root 0o755
/usr/share/doc/seqan-apps/fiona/example/reads.fa.gz application/gzip root:root 0o644 74.7 KB
/usr/share/doc/seqan-apps/fiona/README text/plain root:root 0o644 3.0 KB
/usr/share/doc/seqan-apps/fx_tools/ root:root 0o755
/usr/share/doc/seqan-apps/fx_tools/README text/plain root:root 0o644 2.7 KB
/usr/share/doc/seqan-apps/gustaf/ root:root 0o755
/usr/share/doc/seqan-apps/gustaf/example/ root:root 0o755
/usr/share/doc/seqan-apps/gustaf/example/adeno.fa.gz application/gzip root:root 0o644 1.6 KB
/usr/share/doc/seqan-apps/gustaf/example/adeno_modified.fa.gz application/gzip root:root 0o644 1.6 KB
/usr/share/doc/seqan-apps/gustaf/example/adeno_modified_reads.fa text/plain root:root 0o644 1.4 KB
/usr/share/doc/seqan-apps/gustaf/example/stellar.gff text/plain root:root 0o644 2.6 KB
/usr/share/doc/seqan-apps/gustaf/README.gz application/gzip root:root 0o644 5.2 KB
/usr/share/doc/seqan-apps/insegt/ root:root 0o755
/usr/share/doc/seqan-apps/insegt/example/ root:root 0o755
/usr/share/doc/seqan-apps/insegt/example/annoOutput.gff text/plain root:root 0o644 1.2 KB
/usr/share/doc/seqan-apps/insegt/example/annotations.gff text/plain root:root 0o644 936 bytes
/usr/share/doc/seqan-apps/insegt/example/readOutput.gff text/plain root:root 0o644 571 bytes
/usr/share/doc/seqan-apps/insegt/example/tupleOutput.gff text/plain root:root 0o644 1.4 KB
/usr/share/doc/seqan-apps/insegt/README.gz application/gzip root:root 0o644 3.1 KB
/usr/share/doc/seqan-apps/mason2/ root:root 0o755
/usr/share/doc/seqan-apps/mason2/example/ root:root 0o755
/usr/share/doc/seqan-apps/mason2/example/adeno_virus.fa.gz application/gzip root:root 0o644 10.8 KB
/usr/share/doc/seqan-apps/mason2/README text/plain root:root 0o644 3.6 KB
/usr/share/doc/seqan-apps/mason2/README.mason_frag_sequencing text/plain root:root 0o644 3.9 KB
/usr/share/doc/seqan-apps/mason2/README.mason_genome text/plain root:root 0o644 2.4 KB
/usr/share/doc/seqan-apps/mason2/README.mason_materializer text/plain root:root 0o644 3.5 KB
/usr/share/doc/seqan-apps/mason2/README.mason_methylation.gz application/gzip root:root 0o644 1.2 KB
/usr/share/doc/seqan-apps/mason2/README.mason_simulator.gz application/gzip root:root 0o644 1.5 KB
/usr/share/doc/seqan-apps/mason2/README.mason_splicing text/plain root:root 0o644 3.6 KB
/usr/share/doc/seqan-apps/mason2/README.mason_variator.gz application/gzip root:root 0o644 2.7 KB
/usr/share/doc/seqan-apps/micro_razers/ root:root 0o755
/usr/share/doc/seqan-apps/micro_razers/example/ root:root 0o755
/usr/share/doc/seqan-apps/micro_razers/example/genome.fa text/plain root:root 0o644 145 bytes
/usr/share/doc/seqan-apps/micro_razers/example/reads.fa text/plain root:root 0o644 129 bytes
/usr/share/doc/seqan-apps/micro_razers/example/reads.fa.result text/plain root:root 0o644 147 bytes
/usr/share/doc/seqan-apps/micro_razers/README.gz application/gzip root:root 0o644 3.1 KB
/usr/share/doc/seqan-apps/ngs_roi/ root:root 0o755
/usr/share/doc/seqan-apps/ngs_roi/example/ root:root 0o755
/usr/share/doc/seqan-apps/ngs_roi/example/dmel.bed.gz application/gzip root:root 0o644 37.8 KB
/usr/share/doc/seqan-apps/ngs_roi/example/dmel.gtf.gz application/gzip root:root 0o644 11.7 KB
/usr/share/doc/seqan-apps/ngs_roi/example/example.bam.gz application/gzip root:root 0o644 296.0 KB
/usr/share/doc/seqan-apps/ngs_roi/R/ root:root 0o755
/usr/share/doc/seqan-apps/ngs_roi/README.gz application/gzip root:root 0o644 3.5 KB
/usr/share/doc/seqan-apps/ngs_roi/R/ngsroi_0.1.tar.gz application/gzip root:root 0o644 4.2 KB
/usr/share/doc/seqan-apps/ngs_roi/R/ngsroi_0.1.zip application/zip root:root 0o644 16.8 KB
/usr/share/doc/seqan-apps/pair_align/ root:root 0o755
/usr/share/doc/seqan-apps/pair_align/README text/plain root:root 0o644 49 bytes
/usr/share/doc/seqan-apps/param_chooser/ root:root 0o755
/usr/share/doc/seqan-apps/param_chooser/README text/plain root:root 0o644 106 bytes
/usr/share/doc/seqan-apps/rabema/ root:root 0o755
/usr/share/doc/seqan-apps/rabema/README.gz application/gzip root:root 0o644 2.4 KB
/usr/share/doc/seqan-apps/razers/ root:root 0o755
/usr/share/doc/seqan-apps/razers3/ root:root 0o755
/usr/share/doc/seqan-apps/razers3/example/ root:root 0o755
/usr/share/doc/seqan-apps/razers3/example/genome.fa text/plain root:root 0o644 985 bytes
/usr/share/doc/seqan-apps/razers3/example/reads2.fa text/plain root:root 0o644 105 bytes
/usr/share/doc/seqan-apps/razers3/example/reads.fa text/plain root:root 0o644 105 bytes
/usr/share/doc/seqan-apps/razers3/README.gz application/gzip root:root 0o644 6.9 KB
/usr/share/doc/seqan-apps/razers/example/ root:root 0o755
/usr/share/doc/seqan-apps/razers/example/genome.fa text/plain root:root 0o644 985 bytes
/usr/share/doc/seqan-apps/razers/example/reads2.fa text/plain root:root 0o644 105 bytes
/usr/share/doc/seqan-apps/razers/example/reads.fa text/plain root:root 0o644 105 bytes
/usr/share/doc/seqan-apps/razers/README.gz application/gzip root:root 0o644 6.5 KB
/usr/share/doc/seqan-apps/README.Debian text/plain root:root 0o644 1.8 KB
/usr/share/doc/seqan-apps/rep_sep/ root:root 0o755
/usr/share/doc/seqan-apps/rep_sep/README text/plain root:root 0o644 22 bytes
/usr/share/doc/seqan-apps/sak/ root:root 0o755
/usr/share/doc/seqan-apps/sak/man/ root:root 0o755
/usr/share/doc/seqan-apps/sak/man/sak.1 text/troff root:root 0o644 2.9 KB
/usr/share/doc/seqan-apps/sak/README text/plain root:root 0o644 956 bytes
/usr/share/doc/seqan-apps/sak/README.sak.txt text/plain root:root 0o644 2.6 KB
/usr/share/doc/seqan-apps/sam2matrix/ root:root 0o755
/usr/share/doc/seqan-apps/sam2matrix/README text/plain root:root 0o644 1.4 KB
/usr/share/doc/seqan-apps/samcat/ root:root 0o755
/usr/share/doc/seqan-apps/samcat/README text/plain root:root 0o644 840 bytes
/usr/share/doc/seqan-apps/searchjoin/ root:root 0o755
/usr/share/doc/seqan-apps/searchjoin/README text/plain root:root 0o644 1023 bytes
/usr/share/doc/seqan-apps/seqan_tcoffee/ root:root 0o755
/usr/share/doc/seqan-apps/seqan_tcoffee/example/ root:root 0o755
/usr/share/doc/seqan-apps/seqan_tcoffee/example/seq.fa text/plain root:root 0o644 1.5 KB
/usr/share/doc/seqan-apps/seqan_tcoffee/README text/plain root:root 0o644 1.7 KB
/usr/share/doc/seqan-apps/seqcons2/ root:root 0o755
/usr/share/doc/seqan-apps/seqcons2/README text/plain root:root 0o644 535 bytes
/usr/share/doc/seqan-apps/sgip/ root:root 0o755
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/usr/share/doc/seqan-apps/sgip/example/iso_m2D_m196.A01 application/octet-stream root:root 0o644 1.1 KB
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/usr/share/doc/seqan-apps/sgip/example/latin-4 application/octet-stream root:root 0o644 322 bytes
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/usr/share/doc/seqan-apps/sgip/README text/plain root:root 0o644 91 bytes
/usr/share/doc/seqan-apps/snp_store/ root:root 0o755
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/usr/share/doc/seqan-apps/snp_store/example/exampleReads.gff text/plain root:root 0o644 793 bytes
/usr/share/doc/seqan-apps/snp_store/README.gz application/gzip root:root 0o644 5.3 KB
/usr/share/doc/seqan-apps/splazers/ root:root 0o755
/usr/share/doc/seqan-apps/splazers/example/ root:root 0o755
/usr/share/doc/seqan-apps/splazers/example/genome.fa text/plain root:root 0o644 985 bytes
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/usr/share/doc/seqan-apps/splazers/README.gz application/gzip root:root 0o644 7.0 KB
/usr/share/doc/seqan-apps/stellar/ root:root 0o755
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/usr/share/doc/seqan-apps/stellar/example/NC_001474.fasta.gz application/gzip root:root 0o644 3.5 KB
/usr/share/doc/seqan-apps/stellar/example/NC_001477.fasta.gz application/gzip root:root 0o644 3.6 KB
/usr/share/doc/seqan-apps/stellar/example/reads.fasta text/plain root:root 0o644 1.1 KB
/usr/share/doc/seqan-apps/stellar/README.gz application/gzip root:root 0o644 5.0 KB
/usr/share/doc/seqan-apps/tree_recon/ root:root 0o755
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/usr/share/doc/seqan-apps/tree_recon/README text/plain root:root 0o644 20 bytes
/usr/share/doc/seqan-apps/yara/ root:root 0o755
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/usr/share/man/ root:root 0o755
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/usr/share/man/man1/gustaf.1.gz application/gzip root:root 0o644 20 bytes
/usr/share/man/man1/insegt.1.gz application/gzip root:root 0o644 20 bytes
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/usr/share/man/man1/mason_materializer.1.gz application/gzip root:root 0o644 20 bytes
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/usr/share/man/man1/rabema_evaluate.1.gz application/gzip root:root 0o644 20 bytes
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/usr/share/man/man1/splazers.1.gz application/gzip root:root 0o644 20 bytes
/usr/share/man/man1/stellar.1.gz application/gzip root:root 0o644 20 bytes
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