/usr/bin/relion_star_loopheader is in relion-bin 1.4+dfsg-3ubuntu1.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 | #!/bin/bash -f
if [ $# != 0 ]; then
echo "data_"
echo "loop_"
for i;
do
echo "_"${i}
done;
else
echo " === Usage: === "
echo " ${0} <label1> <label2> ..."
echo " "
echo " === Purpose: === "
echo " This (bash) script generates the header of STAR-file with the given labels"
echo " "
echo " === Example: ==="
echo " ${0} rlnImageName rlnDefocusU rlnDefocusV rlnDefocusAngle rlnVoltage rlnSphericalAberration rlnAmplitudeContrast"
echo " yields: "
echo " data_"
echo " loop_"
echo " _rlnImageName"
echo " _rlnDefocusU"
echo " _rlnDefocusV"
echo " _rlnDefocusAngle"
echo " _rlnVoltage"
echo " _rlnSphericalAberration"
echo " _rlnAmplitudeContrast"
fi
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