/usr/include/libphylo/computePosteriorExpectationOfSubstitutions_nonReversibleSp.h is in rate4site 3.0.0-5.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | #ifndef ___COMPUTE_POSTERIOR_EXPECTATION_OF_SUBSTITUTIONS_NONREVERSIBLESP
#define ___COMPUTE_POSTERIOR_EXPECTATION_OF_SUBSTITUTIONS_NONREVERSIBLESP
#include "computePosteriorExpectationOfSubstitutions.h"
class computePosteriorExpectationOfSubstitutions_nonReversibleSp:public computePosteriorExpectationOfSubstitutions {
public:
explicit computePosteriorExpectationOfSubstitutions_nonReversibleSp(const tree &tr, const sequenceContainer &sc, stochasticProcess *sp):computePosteriorExpectationOfSubstitutions(tr,sc,sp){}
virtual ~computePosteriorExpectationOfSubstitutions_nonReversibleSp(){};
void computePosteriorOfChangeGivenTerminals(VVVdouble &posteriorPerNodePer2States, int pos);
private:
MDOUBLE computePosterioGivenTerminalsPerBranch (int nodeId,int sonState, int fatherState,suffStatGlobalHomPos &sscUp,
suffStatGlobalGamPos &sscDown,computePijHom &pi, MDOUBLE &LLData, const string nodeName);
};
#endif
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