/usr/lib/R/site-library/PSCBS/INDEX is in r-cran-pscbs 0.63.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | CBS The CBS class
NonPairedPSCBS The NonPairedPSCBS class
PSCBS The PSCBS class
PSCBS-package Package PSCBS
PairedPSCBS The PairedPSCBS class
callSegmentationOutliers
Calls/drops single-locus outliers along the
genome
findLargeGaps Identifies gaps of a genome where there exist
no observations
gapsToSegments.data.frame
Gets the genomic segments that are
complementary to the gaps
segmentByCBS Segment genomic signals using the CBS method
segmentByNonPairedPSCBS
Segment total copy numbers and allele B
fractions using the Non-paired PSCBS method
segmentByPairedPSCBS Segment total copy numbers and allele B
fractions using the Paired PSCBS method
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