/usr/lib/R/library/cluster/NEWS.Rd is in r-cran-cluster 2.0.6-2build1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 | % Check from R:
% news(db = tools:::.build_news_db_from_package_NEWS_Rd("~/R/Pkgs/cluster/inst/NEWS.Rd"))!
\name{NEWS}
\title{News for \R Package \pkg{cluster}}% MM: look into ../svn-log-from.all
\encoding{UTF-8}
\newcommand{\CRANpkg}{\href{http://CRAN.R-project.org/package=#1}{\pkg{#1}}}
%% NB: The date (yyyy-mm-dd) is the "Packaged:" date in ../DESCRIPTION
\section{Changes in version 2.0.6 (2017-03-10, svn r7332)}{
\subsection{New Features}{
\itemize{
\item \code{mona()} now C- instead of Fortran-based (having used
f2c etc) and now has a \code{trace.lev} option which allows
progress reporting
\dQuote{remembers} if the original data had missing values.
}
}
\subsection{Bug Fixes}{
\itemize{
\item \code{mona(<1-column>)} no longer loops infinitely but signals
an error.
}
}
}
\section{Changes in version 2.0.5 (2016-10-07, svn r7278)}{
\subsection{New Features}{
\itemize{
\item \code{clusGap()} gets a new option \code{scaleH0}, and
\code{scaleH0 = "original"} is an alternative to the default PCA
rotation.%% still see ../TODO-MM !
\item \code{clusGap()} now also stores its \code{call} and uses
that for \code{print()}ing and (by default in the \code{main} title)
for \code{plot()}ing \code{"clusGap"} objects.
\item
__ MOSTLY NOT IMPLEMENTED yet __ %%% TODO !!!
\code{diana()} gets new optional argument \code{stop.at.k}.
When a positive integer, the DIANA algorithm will stop early, as
much desirable for large \eqn{n}.
}
}
\subsection{Bug Fixes}{
\itemize{
\item \code{daisy()} gets 3+1 new options \code{warn*} which allow
to suppress three different kind of warnings, as these are
undesirable in some cases. With thanks to Kirill Müller for the
convincing context.
\item \code{pam()} now signals an error when there are more than
65536 observational units (whereas it could segfault previously),
thanks to a patch from Mikko Korpela, Helsinki.
}
}
}
\section{Changes in version 2.0.4 (2016-04-16, svn r7186)}{
\subsection{New Features}{
\itemize{
\item \code{clusGap()} gets a new option \code{d.power = 1}
allowing to choose the basic weight statistic as it was originally
proposed, namely \emph{squared} distances by setting \code{d.power = 2}.
%% ~/R/MM/Pkg-ex/cluster/Gonzalez-on-clusGap.R <--
}
}
\subsection{Bug Fixes}{
\itemize{
\item fix small glitch in silhouette's help page.
\item Finally fixed a bug (in the original Fortran code from
Rousseeuw!) in clara's distance computation when there are
\code{NA}s in the data. As the fix is not backward compatible,
a warning is produced (for the time being) if there \emph{are}
\code{NA}s and the user does not explicitly use \code{clara(*, correct.d = TRUE)}.
}
}
}
\section{Changes in version 2.0.3 (2015-07-20, svn r6985)}{
\subsection{New Features}{
\itemize{
\item This new \file{NEWS.Rd} file -- going to replace \file{ChangeLog}
eventually.
}
}
\subsection{Bug Fixes}{
\itemize{
\item import all we need (but not more) from the "base" pkgs
(stats, graphics, ...).
}
}
}
\section{Changes in version 2.0.2 (2015-06-18, svn r6955)}{
\subsection{New Features}{
\itemize{
\item using new \code{anyNA()} where appropriate.
\item New Korean translations, thanks to Chel Hee Lee.
\item \code{plotpart()}: \code{cmdscale()} tweaks.
}
}
\subsection{Bug Fixes}{
\itemize{
\item valgrind detected missing allocation (\code{nisol["1"]} for k=1).
\item typo R/daisy.q (R bug %once we require R >= 3.2.0: \PR{16430}
\Sexpr[results=rd]{tools:::Rd_expr_PR(16430)}).
}
}
}
\section{Changes in version 2.0.1 (2015-01-31, svn r6877)}{
\subsection{Bug Fixes}{
\itemize{
\item Fix \code{silhouette( obj )} for \code{obj <- pam(x, k = 1)}.
}
}
}
\section{Changes in version 2.0.0 (2015-01-29, svn r6874)}{
\subsection{New Features}{
\itemize{
\item \code{pam()} now using \code{.Call()} instead of
\code{.C()} is potentially considerably more efficient.
\item \code{agnes()} has improved \code{trace} behaviour; also,
some invalid \code{par.method = *} settings now give an early and
understandable error message.
\item \code{lower.to.upper.tri.inds()} (etc) now returns \code{integer}.
}
}
\subsection{Bug Fixes}{
\itemize{
\item \code{.C(..)} and \code{.Fortran(..)}: no longer using
\code{DUP=FALSE} as that has become deprecated.
}
}
}
\section{Changes in version 1.15.3 (2014-09-04, svn r6804)}{
\subsection{New Features}{
\itemize{
\item \code{agnes()} and \code{diana()} finally get, respectively
work with a \code{trace.lev} option.
\item \code{plot.(agnes|diana)()} now deals well with long
\code{call}s, by using multiple title lines.
\item Message translations now also for C level error messages.
}
}
\subsection{Bug Fixes}{
\itemize{
\item \code{agnes(*, method="flexible", par.method = c(a1, a2, b, c))},
i.e., \code{length(alpha) == 4}, finally works \emph{correctly}.
}
}
}
\section{Changes in version 1.15.2 (2014-03-31, svn r6724)}{
\subsection{New Features}{
\itemize{
\item Rewrote parts of the R level messages so they are more
easily translatable, thanks to proposals by Lukasz Daniel.
\item French translations from Philippe Grosjean.
}
}
}
\section{Changes in version 1.15.1 (2014-03-13, svn r6676)}{
\subsection{Bug Fixes}{
\itemize{
\item \code{mona} example not working in \R < 3.0.x.
}
}
}
\section{Changes in version 1.15.0 (2014-03-11, svn r6672)}{
\subsection{New Features}{
\itemize{
\item \code{agnes(*, method = "gaverage")} contributed by Pierre
Roudier.
\item documentation improvements;
\item better translatable messages and translation updates.
}
}
}
%% ============================== FIXME ===========================
%% ~~~~~~~~~
%% use ../ChangeLog
%% ~~~~~~~~~
%% and then
%%
%% use ../svn-log-from.all
%% ~~~~~~~~~~~~~~~~
%% and ../../cluster_Archive.lst {~= CRAN src/contrib/Archive/cluster/ :
%%
\section{Changes in version 1.14.4 (2013-03-26, svn r....)}{
\subsection{New Features}{
\itemize{
\item -
}
}
\subsection{Bug Fixes}{
\itemize{
\item -
}
}
}
\section{Changes in version 1.14.3 (2012-10-14, svn r....)}{
\subsection{New Features}{
\itemize{
\item Polnish translations from Lukasz Daniel.
}
}
\subsection{Bug Fixes}{
\itemize{
\item -
}
}
}
\section{Changes in version 1.14.2 (2012-02-06, svn r....)}{
\subsection{New Features}{
\itemize{
\item New \code{clusGap()} to compute the \dQuote{cluster Gap}
goodness-of-fit statistic.
}
}
\subsection{Bug Fixes}{
\itemize{
\item -
}
}
}
\section{Changes in version 1.14.1 (2011-10-16, svn r....)}{
\subsection{New Features}{
\itemize{
\item First translations (into German, thanks to Detlef Steuer).
\item better \code{citation("cluster")}
}
}
\subsection{Bug Fixes}{
\itemize{
\item \code{plot.silhouette(..., col = <one per cluster>)} had
ordering bug.
}
}
}
\section{Changes in version 1.14.0 (2011-06-07, svn r....)}{
}
%% -> /sfs/w/ftp/CRAN/src/contrib/Archive/cluster/
%% 214765 Feb 21 2011 cluster_1.13.3.tar.gz
%% 213663 Nov 10 2010 cluster_1.13.2.tar.gz
%% 214083 Jun 25 2010 cluster_1.13.1.tar.gz
%% 214677 Apr 2 2010 cluster_1.12.3.tar.gz
%% 214577 Oct 6 2009 cluster_1.12.1.tar.gz
%% 215041 May 13 2009 cluster_1.12.0.tar.gz
%% 211085 Mar 31 2009 cluster_1.11.13.tar.gz
%% 321990 Jan 7 2009 cluster_1.11.12.tar.gz
%% 245055 Jun 16 2008 cluster_1.11.11.tar.gz
%% 243446 Feb 29 2008 cluster_1.11.10.tar.gz
%% 216573 Oct 2 2007 cluster_1.11.9.tar.gz
%% 215257 Sep 4 2007 cluster_1.11.8.tar.gz
%% 216815 Jun 5 2007 cluster_1.11.7.tar.gz
%% 216729 Apr 27 2007 cluster_1.11.6.tar.gz
%% 211615 Mar 31 2007 cluster_1.11.5.tar.gz
%% 211634 Dec 12 2006 cluster_1.11.4.tar.gz
%% 203692 Dec 2 2006 cluster_1.11.3.tar.gz
%% 210927 Sep 7 2006 cluster_1.11.2.tar.gz
%% 210091 Aug 25 2006 cluster_1.11.1.tar.gz
%% 210215 May 18 2006 cluster_1.11.0.tar.gz
%% 195962 Mar 21 2006 cluster_1.10.5.tar.gz
%% 197577 Jan 26 2006 cluster_1.10.4.tar.gz
%% 197853 Jan 26 2006 cluster_1.10.3.tar.gz
%% 190839 Aug 31 2005 cluster_1.10.2.tar.gz
%% 190975 Jul 3 2005 cluster_1.10.1.tar.gz
%% 189042 Jun 13 2005 cluster_1.10.0.tar.gz
%% 179723 Apr 4 2005 cluster_1.9.8.tar.gz
%% 176832 Jan 24 2005 cluster_1.9.7.tar.gz
%% 174742 Aug 24 2004 cluster_1.9.6.tar.gz
%% 174218 Aug 4 2004 cluster_1.9.5.tar.gz
%% 175565 Jun 26 2004 cluster_1.9.4.tar.gz
%% 173097 Jun 18 2004 cluster_1.9.3.tar.gz
%% 173251 Jun 13 2004 cluster_1.9.2.tar.gz
%% 169773 Apr 12 2004 cluster_1.9.1.tar.gz
%% 170071 Mar 14 2004 cluster_1.8.1.tar.gz
%% 165322 Jan 22 2004 cluster_1.8.0.tar.gz
%% 161548 Sep 24 2003 cluster_1.7.6.tar.gz
%% 161359 Sep 3 2003 cluster_1.7.5.tar.gz
%% 161257 Jul 18 2003 cluster_1.7.4.tar.gz
%% 160252 Jun 11 2003 cluster_1.7.3.tar.gz
%% 158265 Jun 4 2003 cluster_1.7.2.tar.gz
%% 157386 May 1 2003 cluster_1.7.1.tar.gz
%% 155161 Mar 26 2003 cluster_1.7.0.tar.gz
%% 154089 Dec 31 2002 cluster_1.6-4.tar.gz
%% 154987 Dec 5 2002 cluster_1.6-3.tar.gz
%% 154261 Oct 23 2002 cluster_1.6-2.tar.gz
%% 147063 Sep 10 2002 cluster_1.6-1.tar.gz
%% 131808 Jul 30 2002 cluster_1.5-2.tar.gz
%% 116292 Jun 19 2002 cluster_1.5-1.tar.gz
%% 113972 Mar 31 2002 cluster_1.4-2.tar.gz
%% 113889 Mar 7 2002 cluster_1.4-1.tar.gz
%% 116698 Jan 24 2002 cluster_1.4-0.tar.gz
%% 105552 Dec 19 2001 cluster_1.3-6.tar.gz
%% 105390 Nov 7 2001 cluster_1.3-5.tar.gz
%% 105275 Aug 24 2001 cluster_1.3-4.tar.gz
%% 103626 Jun 8 2001 cluster_1.3-3.tar.gz
%% 99698 Jan 4 2001 cluster_1.3-2.tar.gz
%% 91608 Feb 18 2000 cluster_1.2-3.tar.gz
%% 91736 Dec 29 1999 cluster_1.2-2.tar.gz
%% 93048 Dec 5 1999 cluster_1.2-1.tar.gz
%% ============================== FIXME ===========================
\section{Version 1.2-1}{
\subsection{Versions 1.2-1, ... 1.13-3}{
\itemize{
\item 60 more CRAN releases of the package \pkg{cluster}
from Dec 1999 to Feb 2011.
}
}
}
% How can I add vertical space ?
% \preformatted{} is not allowed, nor is \cr
\section{Version 1.2-0 (1999-04-11)}{
\subsection{First CRAN release of the \pkg{cluster} package, by Kurt Hornik}{
\itemize{
\item Martin Maechler had its own version independently.
\item Both closely modeled after \code{clus} the tarball off JSS.
}}
\subsection{R Functions -- Fortran Files}{
\itemize{
\item \code{agnes()} -- \file{twins.f} for the \dQuote{twins} \code{agnes} and \code{diana}.
\item \code{clara()} -- \code{clara.f}
\item \code{daisy()} -- \file{daisy.f} (and \file{meet.f})
\item \code{diana()} -- (twins.f)
\item \code{fanny()} -- \file{fanny.f}
\item \code{mona()} -- \file{mona.f}
\item \code{pam()} -- \file{pam.f}
}
}
\subsection{Data Sets}{
\itemize{
\item agriculture
\item animals
\item flower
\item ruspini
\item votes.repub
}
}
\subsection{Further Features}{
\itemize{
\item all Examples in \file{man/*.Rd} hand edited to become
executable.
\item \code{summary()}, \code{print()} (and
\code{print.summary.**()} methods) for the six basic \R functions above.
}
}
}
\section{Version 1.1-2 (1998-06-16)}{
\subsection{Renamed previous \pkg{clus} to \pkg{cluster}}{
\itemize{ \item . }
}
}
\section{Version 1.1-1 (1998-06-15)}{
\subsection{New Features}{
\itemize{
\item started \file{ChangeLog}
}
}
}
|